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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6180#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 863 fasta sequence
[CAGCATCACATTCGCCGCTAGCGCCGGCTCCCTCGCCGCCGCCGCCACCCCCATCTCCGCCGCAACCAAGGTTTGAAGC-TACTGGGAG-GGAGGGGGAGCCCAGGAGCGAGCCGCTGGCTGGGTAGAGAGGAGGGATCTAGTCGAGAGAGATGGGGTGGAAGGCTGCGGAGAAGCTCATCAGACACTGGAAGATCCTCCGCGGTGACGACGTGATGATCATAAGAGG-CAAGGACAAGGGGGAGAGCGGGCTCATCAAGCGGGTCATCCGGTCGCAGAACCGTGTCATCGTCGAGGGAAAGAATTTGGTTAAGAAACATATTAAGCAAGGAGAAGGACATACAGGTGGGATTTTCTCAATTGAAGCTCCACTTCATGTTTCAAATGTTCAAGTACTTGATCCAGTCACTGGGAAACCATGTAAGATTGGATACAAGTATTTGGAAGATGGGACTAAAGTCAGGTTTGCTAGAGGAATGAATGCATCTGGTGCTGTGATACCCAGGCCAGAAATTTTGAAGGAGCGAAGAAAGCCAAGACCTACATCACCTGGCCCAAAGGATACACCAATTGAGCATGTGCTGGAGAAAACCTATGATGCCAAGGCTGGAATTGGGATGCCTGATCTATAGGCTAGTTCTGTCTGGGTTGCTACTCAGGGAGAGTTCATTGTATGTGTGACAACACCCCAGTTCAGATAGCAGGAAGTCTGTCCTCAACTTTGCACCTGTATTGCTCTCGAAATAATTTTGTAATGGTCACTGAAAAAGCATCACCCGCATGTTTTTAGTCTCTGTTTTGGTTAGATTCTTTATCCCACTGGAAATGCACATACATTTGGCAAAAAAAGTTCAAATCATATATTC]
[+] EMBL CF336630 [CAGCATCACATTCGCCGCTAGCGCCGGCTCCCTCGCCGCCGCCGCCACCCCCATCTCCGCCGCAACCAAGGTTTGAAGCTTACTGGGAG GGAGGGGGAGCCCAGGAGCGAGCCGCTGGCTGGGTAGAGAGGAGGGATCTAGTCGAGAGAGATGGGGTGGAAGGCTGCGGAGAAGCTCATCAGACACTGGAAGATCCTCCGCGGTGACGACGTGATGATCATAAGAGG CAAGGACAAGGGGGAGAGCGGGCTCATCAAGCGGGTCATTCGGTCGCAGAACCGTGTCATCGTCGAGGGAAAGAATTTGGTTAAGAAACATATTAAGCAAGGAGAAGGACATACAGGTGGGATTTTCTCAATTGAAGCTCCAC ]
[+] EMBL AK121443 [ CGCCATCCCCATCTCCGCCGCAACCAAGGCTTGAGGC TACTGGCCGTGGAGGGGGAACCCAAGAGCGAGCCGCGGGCGGGGAAGAGAGGAGGGATCTAGGCGAGAGAGATGGGGTGGAAGGCTGCCGAGAAGCTCATCAGGCACTGGAAGATCCTCCGCGGTGACAACGTGATGATTATAAGAGG CAAGGACAAGGGGGAGAGCGGGCTCATCAAGCGGGTCATCCGGTCGCAGAACCGTGTCATCGTCGAGGGAAAGAATTTGGTTAAGAAACATATCAAGCAAGGAGAAGGACATACAGGTGGGATTTTCTCAATTGAAGCTCCACTTCATGTTTCAAATGTTCAAGTACTTGATCCAGTCACTGGGAAACCATGTAAGATTGGATACAAGTATTTGGAAGATGGGACTAAAGTCAGGTTTGCTAGAGGAATGAATGCATCTGGTGCTGTGATACCCAGGCCAGAAATTTTGAAGGAGCGAAGAAAGCCAAGACCTACATCACCTGGCCCAAAGGATACACCAATTGAGCATGTGCTGGAGAAAACCTATGATGCCAAGGCTGGAATTGGGATGCCTGATCTATAGGCTAGTTCTGTCTGGGTTGCTACTCAGGGAGAGTTCATTGTATGTGTGACAACACCCCAGTTCAGATAGCAGGAAGTCTGTCCTCAACTTTGCACCTGTATTGCTCTCGAAATAATTTTGTAATGGTCACTGAAAAAGCATCACCCGCATGTTTTTAGTCTCTGTTTTGGTTAGATTCTTTATCCCACTGGAAATGCACATACATTTGGCAAAAAAAGTTCAAATCATATATTC]
[-] EMBL CA759566 [ AGAGGACGA GACAAGGGGGAGAGCGGGCTCATCAAGCGGGTCATCCGGTCGCAGAACCGTGTCATCGTCGAGGGAAAGAATTTGGTTAAGAAACATATTAAGCAAGGAGAAGGACATACAGGTGGGATTTTCTCAATTGAAGCTCCACTTCATGTTTCAAATGTTCAAGTACTTGATCCAGTCACTGGGAAACCATGCAAGATTGGATACAAGTATTTGGAAGATGGGACTAAAGTCAGGTTTGCTAGAGGAATGAATGCATCTGGTGCTGTGATACCCAGGCCAGAAATTTTGAAGGAGCGAAGAAAGCCAAGACCTACATCACCTGGCCCAAAGGATACACCAATTGAGCATGTGCTGGAGAAAACCTATGATGCCAAGGCTGGAATTGGGATGCCTGATCTATAGGCTAGTTCTGTCTGGGTTGCTACTCAGGGAGAGTTCATTGTATGTGTGACAACACCCCAGTTCAGATAGCAGGAAGTCTGTCCTCAACTTTGCACCTGTATTGCTCTCGAAATAATTTTGTAATGGTCACTGAAAAAGCATCACCCGCATGTTTTTAGTCTCTGTTTTGGTTAaa ]
consensusID : consensus_6180#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence
[TAGGTGGACGAGACAAGGGGGGATCTAGTCGAGAGAGATGGGGTGGAAGGCTGCGGAGAAGCTCATCAGACACTGGAAGATCCTCCGCGGTGACAACGTGATGATCATAAGAGGCAAGGACAAGGGGGAGAGCGGGCTCATCAAGCGGGTCATTCGGTCGCAGAACCGTGTAATCGTCGAGGGAAAGAATTTGGTTAAGAAACATATTAAGCAAGGAGAAGGACATACAGGTGGGATTTTCTCAATTGAAGCTCCACTTCATGTTTCAAATGTTCAAGTACTTGATCCAGTCACTGGGAAACCATGTAAGATTGGATACAAGTATTTGGAAGATGGAACTAAAGTCAGGTTTGCTAGAGGAATGAATGCATCTGGTGCTGTGATACCCAGGCCAGAAATTTTGAAGGAGCGAAGAAAGCCAAGACCTACATCACCTGGCCCAAAGGATACACCAATTGAACATGTGCTGGAGAAAACCTATGATGCCAAGGCTGGAATCGGGATGCCTGATCTATAGGTTAGTGCTGTCTGGGTTGCAGAGTTCATTGTATGTGTGGCAACACCCCAGTTCAGATAGCAGGAAGTCTTTCTTCAACTTTGCACCTGTATTGCTCTCGAAATAATTTTGTTATGGTCATTGAAAAAACATTTCCCAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA759567 [TAGGTGGACGAGACAAGGGGGGATCTAGTCGAGAGAGATGGGGTGGAAGGCTGCGGAGAAGCTCATCAGACACTGGAAGATCCTCCGCGGTGACAACGTGATGATCATAAGAGGCAAGGACAAGGGGGAGAGCGGGCTCATCAAGCGGGTCATTCGGTCGCAGAACCGTGTAATCGTCGAGGGAAAGAATTTGGTTAAGAAACATATTAAGCAAGGAGAAGGACATACAGGTGGGATTTTCTCAATTGAAGCTCCACTTCATGTTTCAAATGTTCAAGTACTTGATCCAGTCACTGGGAAACCATGTAAGATTGGATACAAGTATTTGGAAGATGGAACTAAAGTCAGGTTTGCTAGAGGAATGAATGCATCTGGTGCTGTGATACCCAGGCCAGAAATTTTGAAGGAGCGAAGAAAGCCAAGACCTACATCACCTGGCCCAAAGGATACACCAATTGAACATGTGCTGGAGAAAACCTATGATGCCAAGGCTGGAATCGGGATGCCTGATCTATAGGTTAGTGCTGTCTGGGTTGCAGAGTTCATTGTATGTGTGGCAACACCCCAGTTCAGATAGCAGGAAGTCTTTCTTCAACTTTGCACCTGTATTGCTCTCGAAATAATTTTGTTATGGTCATTGAAAAAACATTTCCCAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6180#0 CAGCATCACATTCGCCGCTAGCGCCGGCTCCCTCGCCGCCGCCGCCACCCCCATCTCCGC 60
consensus_6180#1 ------------------------------------------------------------
consensus_6180#0 CGCAACCAAGGTTTGAAGCTACTGGGAGGGAGGGGGAGCCCAGGAGCGAGCCGCTGGCTG 120
consensus_6180#1 ------------------------------------------------------TAGGTG 6
* * **
consensus_6180#0 GGTAGAG--AGGAGGGATCTAGTCGAGAGAGATGGGGTGGAAGGCTGCGGAGAAGCTCAT 178
consensus_6180#1 GACGAGACAAGGGGGGATCTAGTCGAGAGAGATGGGGTGGAAGGCTGCGGAGAAGCTCAT 66
* *** ***********************************************
consensus_6180#0 CAGACACTGGAAGATCCTCCGCGGTGACGACGTGATGATCATAAGAGGCAAGGACAAGGG 238
consensus_6180#1 CAGACACTGGAAGATCCTCCGCGGTGACAACGTGATGATCATAAGAGGCAAGGACAAGGG 126
**************************** *******************************
consensus_6180#0 GGAGAGCGGGCTCATCAAGCGGGTCATCCGGTCGCAGAACCGTGTCATCGTCGAGGGAAA 298
consensus_6180#1 GGAGAGCGGGCTCATCAAGCGGGTCATTCGGTCGCAGAACCGTGTAATCGTCGAGGGAAA 186
*************************** ***************** **************
consensus_6180#0 GAATTTGGTTAAGAAACATATTAAGCAAGGAGAAGGACATACAGGTGGGATTTTCTCAAT 358
consensus_6180#1 GAATTTGGTTAAGAAACATATTAAGCAAGGAGAAGGACATACAGGTGGGATTTTCTCAAT 246
************************************************************
consensus_6180#0 TGAAGCTCCACTTCATGTTTCAAATGTTCAAGTACTTGATCCAGTCACTGGGAAACCATG 418
consensus_6180#1 TGAAGCTCCACTTCATGTTTCAAATGTTCAAGTACTTGATCCAGTCACTGGGAAACCATG 306
************************************************************
consensus_6180#0 TAAGATTGGATACAAGTATTTGGAAGATGGGACTAAAGTCAGGTTTGCTAGAGGAATGAA 478
consensus_6180#1 TAAGATTGGATACAAGTATTTGGAAGATGGAACTAAAGTCAGGTTTGCTAGAGGAATGAA 366
****************************** *****************************
consensus_6180#0 TGCATCTGGTGCTGTGATACCCAGGCCAGAAATTTTGAAGGAGCGAAGAAAGCCAAGACC 538
consensus_6180#1 TGCATCTGGTGCTGTGATACCCAGGCCAGAAATTTTGAAGGAGCGAAGAAAGCCAAGACC 426
************************************************************
consensus_6180#0 TACATCACCTGGCCCAAAGGATACACCAATTGAGCATGTGCTGGAGAAAACCTATGATGC 598
consensus_6180#1 TACATCACCTGGCCCAAAGGATACACCAATTGAACATGTGCTGGAGAAAACCTATGATGC 486
********************************* **************************
consensus_6180#0 CAAGGCTGGAATTGGGATGCCTGATCTATAGGCTAGTTCTGTCTGGGTTGCTACTCAGGG 658
consensus_6180#1 CAAGGCTGGAATCGGGATGCCTGATCTATAGGTTAGTGCTGTCTGGGTTGC--------- 537
************ ******************* **** *************
consensus_6180#0 AGAGTTCATTGTATGTGTGACAACACCCCAGTTCAGATAGCAGGAAGTCTGTCCTCAACT 718
consensus_6180#1 AGAGTTCATTGTATGTGTGGCAACACCCCAGTTCAGATAGCAGGAAGTCTTTCTTCAACT 597
******************* ****************************** ** ******
consensus_6180#0 TTGCACCTGTATTGCTCTCGAAATAATTTTGTAATGGTCACTGAAAAAGCATCACCCGCA 778
consensus_6180#1 TTGCACCTGTATTGCTCTCGAAATAATTTTGTTATGGTCATTGAAAAAACATTTCCCAAA 657
******************************** ******* ******* *** *** *
consensus_6180#0 TGTTTTTAGTCTCTGTTTTGGTTAGATTCTTTATCCCACTGGAAATGCACATACATTTGG 838
consensus_6180#1 AAAAAAAAAAAAAAAAA------------------------------------------- 674
*
consensus_6180#0 CAAAAAAAGTTCAAATCATATATTC 863
consensus_6180#1 -------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||