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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6181#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 890 fasta sequence
[GTGGGTGAGGTGAGGGAGCCTCGCGCCGGCTTTGGATTTTTCGTTCTGCCTCGCGACCGACGATAAAAATCGTGCGTCCGATGAGGCCCTTCTCCCCTCATCTCCGGCAAGCCGCGGCGGCGGCGGCTGCTGCGGCCACTGGCGCTCCTCCCCTCGCCGCAGCTCTCCTCAAGAATTCTTCTGCTCCCCTTATCCATGGCCGGCTCAGCTTCAGCCACACGTCGCTGCAGTCACCGAACAACCGCGGGAAACGAACAGGCTGGGCGGTGCGTGTGCTGCCGCTGACGGAGGAGAACGTGGAGATGGTGCTGGACCAGGTGCGGCCGAGCCTGATGGCGGACGGCGGCAACGTGGCGCTGCACGAGATCGACGGCCTCGTCGTCGTGCTCAAGCTGCAGGGCGCCTGCGGCTCGTGCCCCAGC-TCCACCATGACGCTCAAGATGGGCATCGAGACGCGCCTCCGCGACAAGATCCCCGAGATCCTCGCCGTCGAGCAGATCGTCGACACCGAGACCGGCCTCGAGCTCAACCACGACAACGTCGACAAGGTGCTGGATGAGATCAGACCATACCTTTCCGGCACCGGAGGTGGAAGCCTTGATCTTGTTCAGATTGATGAATCCGTCGTCAAAGTTCGGTTAACTGGACCTGCAGCGGGTGTAATGACAGTACGTGTAGCTGTAACACAAAAACTGAGGGAAAAGATACCATCCATCCTGGCTGTTCAGTTGACAGAGTAGAAACATGAGTTCAGTTATGCAGCAACTCAAGAGAAAACAAAACTTTGATTTTCAGTGATTTTGTGGTATTCAGTCTCAGTCTTGTGGTTTTGAATCAAAACTGAAGTACTGAACGTCTGAACCTATCATACCATCTTTAAATGCAAGTGT]
[+] EMBL AK067484 [GTGGGTGAGGTGAGGGAGCCTCGCGCCGGCTTTGGATTTTTCGTTCTGCCTCGCGACCGACGATAAAAATCGTGCGTCCGATGAGGCCCTTCTCCCCTCATCTCCGGCAAGCCGCGGCGGCGGCGGCTGCTGCGGCCACTGGCGCTCCTCCCCTCGCCGCAGCTCTCCTCAAGAATTCTTCTGCTCCCCTTATCCATGGCCGGCTCAGCTTCAGCCACACGTCGCTGCAGTCACCGAACAACCGCGGGAAACGAACAGGCTGGGCGGTGCGTGTGCTGCCGCTGACGGAGGAGAACGTGGAGATGGTGCTGGACCAGGTGCGGCCGAGCCTGATGGCGGACGGCGGCAACGTGGCGCTGCACGAGATCGACGGCCTCGTCGTCGTGCTCAAGCTGCAGGGCGCCTGCGGCTCGTGCCCCAGC TCCACCATGACGCTCAAGATGGGCATCGAGACGCGCCTCCGCGACAAGATCCCCGAGATCCTCGCCGTCGAGCAGATCGTCGACACCGAGACCGGCCTCGAGCTCAACCACGACAACGTCGACAAGGTGCTGGATGAGATCAGACCATACCTTTCCGGCACCGGAGGTGGAAGCCTTGATCTTGTTCAGATTGATGAATCCGTCGTCAAAGTTCGGTTAACTGGACCTGCAGCGGGTGTAATGACAGTACGTGTAGCTGTAACACAAAAACTGAGGGAAAAGATACCATCCATCCTGGCTGTTCAGTTGACAGAGTAGAAACATGAGTTCAGTTATGCAGCAACTCAAGAGAAAACAAAACTTTGATTTTCAGTGATTTTGTGGTATTCAGTCTCAGTCTTGTGGTTTTGAATCAAAACTGAAGTACTGAACGTCTGAACCTATCATACCATCTTTAAATGCAAGTGT]
[+] EMBL AK103983 [ TGGGTGAGGCGAGGGAGCCTCGCGCCGGCTTTGGATTTTTCGTTCTGCCTCGCGACCGACGATAAAAATCGTGCGTCCGATGAGGCCCTTCTCCCCTCATCTCCGGCAAGCCGCGGCGGCGGCGGCTGCTGCGGCCACTGGCGCTCCTCCCCTCGCCGCAGCTCTCCTCAAGAATTCTTCTGCTCCCCTTATCCATGGCCGGCTCAGCTTCAGCCACACGTCGCTGCAGTCACCGAACAACCGCGGGAAACGAACAGGCTGGGCGGTGCGTGTGCTGCCGCTGACGGAGGAGAACGTGGAGATGGTGCTGGACCAGGTGCGGCCGAGCCTGATGGCGGACGGCGGCAACGTGGCGCTGCACGAGATCGACGGCCTCGTCGTCGTGCTCAAGCTGCAGGGCGCCTGCGGCTCGTGCCCCAGC TCCACCATGACGCTCAAGATGGGCATCGAGACGCGCCTCCGCGACAAGATCCCCGAGATCCTCGCCGTCGAGCAGATCGTCGACACCGAGACCGGCCTCGAGCTCAACCACGACAACGTCGACAAGGTGCTGGATGAGATCAGACCATACCTTTCCGGCACCGGAGGTGGAAGCCTTGATCTTGTTCAGATTGATGAATCCGTCGTCAAAGTTCGGTTAACTGGACCTGCAGCGGGTGTAATGACAGTACGTGTAGCTGTAACACAAAAACTGAGGGAAAAGATACCATCCATCCTGGCTGTTCAGTTGACAGAGTAGAAACATGAGTTCAGTTATGCAGCAACTCAAGAGAAAACAAAACTTTGA TTTCAGTGATTTTGTGGTATTCAGTCTCAGTCTTGTGGTTTTGAATCAAAACTGAAGTACTGAACGTCTGAACCTATCA ]
[-] EMBL CF291216 [ GGGCGGTGCGTGTGCTGCCGCTGACGGAGGAGAACGTGGAGATGGTGCTGGACCAGGTGCGGCCGAGCCTGATGGCGGACGGCGGCAACGTGGCGCTGCACGAGATCGACGGCCTCGTCGTCGTGCTCAAGCTGCAGGGCGCCTGCGGCTCGTGCCCCAGCTTCCACCATGACGCTCAAGATGGGCATCGAGACGCGCCTCCGCGACAAGATCCCCGAGATCCTCGCCGTCGAGCAGATCGTTGACACCGAGACCGGCCTCGAGCTCAACCACGACAACGTCGACAAGGTGCTGGATGAGATCAGACCATACCTTTCCGGCACCGGAGGTGGAAGCCTTGATCTTGTTCAGATTGATGAATCCGTCGTCAAAGTTCGGTTAACTGGACCTGCAGCGGGTGTAATGACAGTACGTGTAGCTGTAACACAAAAACTGAGGGAAACGATACCATCCATCCTGGCTGTTCAGTTGACAGAGTAGAAACATGAGTTCAGTTATGCAGCAACTCAAGAGAAAACAAAACTTTGATTTTCAaaaaa ]
consensusID : consensus_6181#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence
[GGACTGAAGGAGTAGAAACTCGCGACCGACGATAAAAATCGTGCGTCCGATGAGGCCCTTCTCCCCTCATCTCCGGCAAGCCGCGGCGGCGGCGGCTGCTGCGGCCACTGGCGCTCCTCCCCTCGCCGCAGCTCTCCTCAAGAATTCCTCTGCTCCCCTTATCCATGGCCGGCTCAGCTTCAGCCACACGTCGCTGCAGTCACCGAACAACCGCGGGAAACGAACAGGCTGGGCGGTGCGTGTGCTGCCGCTGACGGAGGAGAACGTGGAGATGGTGCTGGACCAGGTGCGGCCGAGCCTGATGGCGGACGGCGGCAACGTGGCGCTGCACGAGATCGACGGCCTCGTCGTCGTGCTCAAGCTGCAGGGCGCCTGCGGCTCGTGCCCCAGCTCCACCATGACGCTCAAGATGGGCATCGAGACGCGCCTCCGCGACAAGATCCCCGAGATCCTCGCCGTCGAGCAGATCGTCGACACCGAGACCGGCCTCGAGCTCAACCACGACAACGTCGACAAGGTGCTGGATGAGATCAGACCATACCTTTCCGGCACCGGAGGTGGAAGCCTTGATCTTGTTCAGATTGATGAATCCGTCGTCAAAGTTCGGTTAACTGGACCTGCAGCGGGTGTAATGACAGTA]
[+] EMBL CF291217 [GGACTGAAGGAGTAGAAACTCGCGACCGACGATAAAAATCGTGCGTCCGATGAGGCCCTTCTCCCCTCATCTCCGGCAAGCCGCGGCGGCGGCGGCTGCTGCGGCCACTGGCGCTCCTCCCCTCGCCGCAGCTCTCCTCAAGAATTCCTCTGCTCCCCTTATCCATGGCCGGCTCAGCTTCAGCCACACGTCGCTGCAGTCACCGAACAACCGCGGGAAACGAACAGGCTGGGCGGTGCGTGTGCTGCCGCTGACGGAGGAGAACGTGGAGATGGTGCTGGACCAGGTGCGGCCGAGCCTGATGGCGGACGGCGGCAACGTGGCGCTGCACGAGATCGACGGCCTCGTCGTCGTGCTCAAGCTGCAGGGCGCCTGCGGCTCGTGCCCCAGCTCCACCATGACGCTCAAGATGGGCATCGAGACGCGCCTCCGCGACAAGATCCCCGAGATCCTCGCCGTCGAGCAGATCGTCGACACCGAGACCGGCCTCGAGCTCAACCACGACAACGTCGACAAGGTGCTGGATGAGATCAGACCATACCTTTCCGGCACCGGAGGTGGAAGCCTTGATCTTGTTCAGATTGATGAATCCGTCGTCAAAGTTCGGTTAACTGGACCTGCAGCGGGTGTAATGACAGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6181#0 GTGGGTGAGGTGAGGGAGCCTCGCGCCGGCTTTGGATTTTTCGTTCTGCCTCGCGACCGA 60
consensus_6181#1 ----------------------------GGACTGAAGG---AGTAGAAACTCGCGACCGA 29
* ** * ** ***********
consensus_6181#0 CGATAAAAATCGTGCGTCCGATGAGGCCCTTCTCCCCTCATCTCCGGCAAGCCGCGGCGG 120
consensus_6181#1 CGATAAAAATCGTGCGTCCGATGAGGCCCTTCTCCCCTCATCTCCGGCAAGCCGCGGCGG 89
************************************************************
consensus_6181#0 CGGCGGCTGCTGCGGCCACTGGCGCTCCTCCCCTCGCCGCAGCTCTCCTCAAGAATTCTT 180
consensus_6181#1 CGGCGGCTGCTGCGGCCACTGGCGCTCCTCCCCTCGCCGCAGCTCTCCTCAAGAATTCCT 149
********************************************************** *
consensus_6181#0 CTGCTCCCCTTATCCATGGCCGGCTCAGCTTCAGCCACACGTCGCTGCAGTCACCGAACA 240
consensus_6181#1 CTGCTCCCCTTATCCATGGCCGGCTCAGCTTCAGCCACACGTCGCTGCAGTCACCGAACA 209
************************************************************
consensus_6181#0 ACCGCGGGAAACGAACAGGCTGGGCGGTGCGTGTGCTGCCGCTGACGGAGGAGAACGTGG 300
consensus_6181#1 ACCGCGGGAAACGAACAGGCTGGGCGGTGCGTGTGCTGCCGCTGACGGAGGAGAACGTGG 269
************************************************************
consensus_6181#0 AGATGGTGCTGGACCAGGTGCGGCCGAGCCTGATGGCGGACGGCGGCAACGTGGCGCTGC 360
consensus_6181#1 AGATGGTGCTGGACCAGGTGCGGCCGAGCCTGATGGCGGACGGCGGCAACGTGGCGCTGC 329
************************************************************
consensus_6181#0 ACGAGATCGACGGCCTCGTCGTCGTGCTCAAGCTGCAGGGCGCCTGCGGCTCGTGCCCCA 420
consensus_6181#1 ACGAGATCGACGGCCTCGTCGTCGTGCTCAAGCTGCAGGGCGCCTGCGGCTCGTGCCCCA 389
************************************************************
consensus_6181#0 GCTCCACCATGACGCTCAAGATGGGCATCGAGACGCGCCTCCGCGACAAGATCCCCGAGA 480
consensus_6181#1 GCTCCACCATGACGCTCAAGATGGGCATCGAGACGCGCCTCCGCGACAAGATCCCCGAGA 449
************************************************************
consensus_6181#0 TCCTCGCCGTCGAGCAGATCGTCGACACCGAGACCGGCCTCGAGCTCAACCACGACAACG 540
consensus_6181#1 TCCTCGCCGTCGAGCAGATCGTCGACACCGAGACCGGCCTCGAGCTCAACCACGACAACG 509
************************************************************
consensus_6181#0 TCGACAAGGTGCTGGATGAGATCAGACCATACCTTTCCGGCACCGGAGGTGGAAGCCTTG 600
consensus_6181#1 TCGACAAGGTGCTGGATGAGATCAGACCATACCTTTCCGGCACCGGAGGTGGAAGCCTTG 569
************************************************************
consensus_6181#0 ATCTTGTTCAGATTGATGAATCCGTCGTCAAAGTTCGGTTAACTGGACCTGCAGCGGGTG 660
consensus_6181#1 ATCTTGTTCAGATTGATGAATCCGTCGTCAAAGTTCGGTTAACTGGACCTGCAGCGGGTG 629
************************************************************
consensus_6181#0 TAATGACAGTACGTGTAGCTGTAACACAAAAACTGAGGGAAAAGATACCATCCATCCTGG 720
consensus_6181#1 TAATGACAGTA------------------------------------------------- 640
***********
consensus_6181#0 CTGTTCAGTTGACAGAGTAGAAACATGAGTTCAGTTATGCAGCAACTCAAGAGAAAACAA 780
consensus_6181#1 ------------------------------------------------------------
consensus_6181#0 AACTTTGATTTTCAGTGATTTTGTGGTATTCAGTCTCAGTCTTGTGGTTTTGAATCAAAA 840
consensus_6181#1 ------------------------------------------------------------
consensus_6181#0 CTGAAGTACTGAACGTCTGAACCTATCATACCATCTTTAAATGCAAGTGT 890
consensus_6181#1 --------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||