These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6182#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1056 fasta sequence [ACCCCTACACTCGCACACCGCACCAGCATTGTCGGCGGCGGCGAAGG-GAAGGCGAGCGGCGGCGNGAGGCGGGGAGGAGCCAAGGACCCAACCGACGCGCTCCGCTCCGACAAGAAGCGCCGCNNCATGGACGACTCCGACGACGCCGAGCTCGACAGTNACATGAAGGAGATCGTGTTGCTGCTGCGCCAGATCAAGGACAAGGCTCACAAGGATGGCCAGAAGAAGACCGAGCAAACCCTCTCCAGTGTTGCTACAGAAATTCAGACTATCGTACAGGATGCCAA-GGNAAGTTTGAGAAGGAAAGGC-AAATTATCT-TAAGTTCTATCAAAG-CTTCAAAAGAGTGTGAAGG-TTACTTGAGGACGAGTACACCAAGTTTCAAGC-ACACATGAT-AATTNTGC-AAG-AAAAGTTCACACACATGCAAACTCTCAAAGACCTTTTCTCAAAGTTCGAAGATGCAAAGGAGAAATTACTTATCCAGTATGAACTGCAAAGGAAGAAGGAGAAGGCTACTCTGTCTGAACTCGAGAAAACATTTTCAGAGAAGATAACTAATGCAGAAGAATCTCTGAAGAAGATGAAGCAGGATGACAAATCCATTGTCAACCTTCGCAAGTCCATTGGCTCATTCCTGGACCCGGATGATGAGTTTGGAGCAGACGATGACTGAAACTGCTGTTGCCAAAATGGTCCTTTTAGAACGCCGTGGATAGTATTTGAGAATATCGATAGTATATATATGAACAGAAGTTACAAAGTTCTGTAGAGATTTGGTAGCATCATACAGTTAGGTACCACATCATCCGTTATTTTGTTTTAAGTTCATTGGGTTAGGCGGTTCCATCATCTGTTTTAAATGCATCTTGGTCGATTCAACAGCAAGAGGCTCAAGATTGTTTAACCTCTTTGGCCTGATTTTCCTTCTTATATAGGAGTAAGTCATAACCAGTAGCTCGCTAAACTTACTTGTCAATATATTTGTATATTTGCAACAAATTATTCATATACAGTATCAGATTTGTATATCAACAGCATAGAATTGCAATGAATCTTCCT] [+] EMBL C27117 [ACCCCTACACTCGCACACCGCACCAGCATTGTCGGCGGCGGCGAAGG GAAGGCGAGCGGCGGCGNGAGGCGGGGAGGAGCCAAGGACCCAACCGACGCGCTCCGCTCCGACAAGAAGCGCCGCNNCATGGACGACTCCGACGACGCCGAGCTCGACAGTNACATGAAGGAGATCGTGTTGCTGCTGCGCCAGATCAAGGACAAGGCTCACAAGGATGGCCAGAAGAAGACCGAGCAAACCCTCTCCAGTGTTGCTACAGAAATTCAGACTATCGTACAGGATGCCAA GGNAAGTTTGAGAAGGAAAGGC AAATTATCT TAAGTTCTATCAAAG CTTCAAAAGAGTGTGAAGG TTACTTGAGGACGAGTACACCAAGTTTCAAGC ACACATGAT AATTNTGC AAG AAAAGTTCAC ] [+] EMBL AK108121 [ CACCGCACCAGCGATGTCGGCGGCGGCGAAGGCGAAGGCGAGCGGCGGCGGGAGGCGGGGAGGAGCCAAGGACCCAACCGACGCGCTCCGCTCCGACAAGAAGCGCCGCGACATGGACGACTCCGACGACGCCGAGCTCGACAGTGACATGAAGGAGATCGTGTTGCTGCTGCGCCAGATCAAGGACAAGGCTCACAAGGATGGCCAGAAGAAGACCGAGCAAACCCTCTCCAGTGTTGCTACAGAAATTCAGACTATCGTACAGGATGCCAAGGGCAAGTTTGAGAAGGAAAGGCAAAATTATCTGAAAGTTCTATCAAAGACTTCAAAAGAGTGTGAAGGTTTACTGAAGAACGAGTACACCAAGTTTCAAGCAACACATGATAAATTCTGCAAAGAAAAAGCT GCACACATGCAAACTCTCAAAGACCTTTTCTCAAAGTTCGAAGATGCAAAGGAGAAATTACTTATCCAGTATGAACTGCAAAGGAAGAAGGAGAAGGCTACTCTGTCTGAACTCGAGAAAACATTTTCAGAGAAGATAACTAATGCAGAAGAATCTCTGAAGAAGATGAAGCAGGATGACAAATCCATTGTCAACCTTCGCAAGTCCATTGGCTCATTCCTGGACCCGGATGATGAGTTTGGAGCAGACGATGACTGAAACTGCTGTTGCCAAAATGGTCCTTTTAGAACGCCGTGGATAGTATTTGAGAATATCGATAGTATATATATGAACAGAAGTTACAAAGTTCTGTAGAGATTTGGTAGCATCATACAGTTAGGTACCACATCATCCGTTATTTTGTTTTAAGTTCATTGGGTTAGGCGGTTCCATCATCTGTTTTAAATGCATCTTGGTCGATTCAACAGCAAGAGGCTCAAGATTGTTTAACCTCTTTGGCCTGATTTTCCTTCTTATATAGGAGTAAGTCATAACCAGTAGCTCGCTAAACTTACTTGTCAATATATTTGTATATTTGCAACAAATTATTCATATACAGTATCAGATTTGTATATCAACAGCATAGAATTGCAATGAATCTTCCT] [+] EMBL AU100794 [ AACTCGAGAAAACATTTTCAGAGAAGATAACTAATGCAGAAGAATCTCTGAAGAAGATGAAGCAGGATGACAAATCCATTGTCAACCTTCGCAAGTCCATTGGCTCATTCCTGGACCCGGATGATGAGTTTGGAGCAGACGATGACTGAAACTGCTGTTGCCAAAATGGTCCTTTTAGAACGCCGTGGATAGTATTTGAGAATATCGATAGTATATATATGAACAGAAGTTACAAAGTTCTGTAGAGATTTGGTAGCATCATACAGTTAGGTACCACATCATCCGTTATTTTGTTTTAAGTTCATTGGGTTAGGCGGTTCCATCATCTGTTTTAAATGCATCTTGGTCGATTCAACAGCAAGAGGCTCAAGATTGTTTAACCTCTTTGGCCTGATTTTCCTTCTTATATAGGAGTAAGTCATAACCAGTAGCTCGCTAAACTTACTTGTCAATATATTTGTATATTTGCAACAAATTATTCATATACAGTATCAGATTTGTAaaaaaaa ] consensusID : consensus_6182#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 708 fasta sequence [ATCAAACAAATATTAGCCCAATTAAAATCCAATACAAAACCCAATTAATATCCATACATCTGATAGCGCAATACATGTTTACTCACTACATGACCATATCCTATAATAGCAAAATAGGCAACCACAAGTCACTAACGAAAATAAACTGTCACTCGCCAAAACAGAAGTCACATGGCCAAATAGCCATTTACATTCGCTGACCGAACCAAGTCACGTGTCGAAATGACACCAATCAAAAGACAGCCATCTCCATCATGAATCATCAAGCCGACATGAAGAGGATAGAGAAACCTGGTTAGTTAAGAATGGAAGTTAACACCTCCAAGACTCTCCAACACTTGTTTATCCTCAAGATAAAATATGACGGGTTTTCCTCGCACAAGGTTCACCTATATAATTCACCTTTGAAAGTTCGCATGTGTGCAGCTTTTTCTTTGCAGAATTTATCGAGTGTCGCTTGAAACTTGGGGGACTCGTTCTTCAGAAAACCTTCACGCTCCTTTGAAGTCTTTGATAGAACTTTCAGATAATTTTGCCTGCGCAGATGTACAACAAAAAGGAACTGCACTCATACAAGTAGAAGTTCACACGCAAGAGAAATGAATTGGCCCTTCATCTTTCTTTCACAAACTTGCCCTTGGCATCCTGTACGATAGTCTGAATTTCTGTTGCAACACTGAAGATTGATCAGAAAAGTTGGTCATGTAA] [+] EMBL CB624011 [ATCAAACAAATATTAGCCCAATTAAAATCCAATACAAAACCCAATTAATATCCATACATCTGATAGCGCAATACATGTTTACTCACTACATGACCATATCCTATAATAGCAAAATAGGCAACCACAAGTCACTAACGAAAATAAACTGTCACTCGCCAAAACAGAAGTCACATGGCCAAATAGCCATTTACATTCGCTGACCGAACCAAGTCACGTGTCGAAATGACACCAATCAAAAGACAGCCATCTCCATCATGAATCATCAAGCCGACATGAAGAGGATAGAGAAACCTGGTTAGTTAAGAATGGAAGTTAACACCTCCAAGACTCTCCAACACTTGTTTATCCTCAAGATAAAATATGACGGGTTTTCCTCGCACAAGGTTCACCTATATAATTCACCTTTGAAAGTTCGCATGTGTGCAGCTTTTTCTTTGCAGAATTTATCGAGTGTCGCTTGAAACTTGGGGGACTCGTTCTTCAGAAAACCTTCACGCTCCTTTGAAGTCTTTGATAGAACTTTCAGATAATTTTGCCTGCGCAGATGTACAACAAAAAGGAACTGCACTCATACAAGTAGAAGTTCACACGCAAGAGAAATGAATTGGCCCTTCATCTTTCTTTCACAAACTTGCCCTTGGCATCCTGTACGATAGTCTGAATTTCTGTTGCAACACTGAAGATTGATCAGAAAAGTTGGTCATGTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6182#0 ACCCCTACACTCGCACACCGCACCAGCATTGTCGGCGGCGGCGAAGGGAAGGCGAGCGGC 60 consensus_6182#1 ------------------------------------------------------------ consensus_6182#0 GGCGNGAGGCGGGGAGGAGCCAAGGACCCAACCGACGCGCTCCGCTCCGACAAGAAGCGC 120 consensus_6182#1 ------------------------------------------------------------ consensus_6182#0 CGCNNCATGGACGACTCCGACGACGCCGAGCTCGACAGTNACATGAAGGAGATCGTGTTG 180 consensus_6182#1 ------------------------------------------------------------ consensus_6182#0 CTGCTGCGCCAGATCAAGGACAAGGCTCACAAGGATGGCCAGAAGAAGACCGAGCAAACC 240 consensus_6182#1 -------ATCAAA-CAAATATTAGCCCAATTAAAAT--CCAATACAAAACCCAATTAATA 50 ** * *** * ** * * * ** *** * ** *** * ** consensus_6182#0 CTCTCCAGTGTTGCTACAGAAATTCAGACTATCGTACAGGATGCCAAGGNAAGTTTGAGA 300 consensus_6182#1 -TCCATACATCTGATAGCGCAATACATGTTTACTCACTACATGACCATAT---CCTATAA 106 ** * ** ** * *** ** * * ** *** * * * * consensus_6182#0 AGGAAAGGCAAATTATCTTAAGTT-CTATCAAAGCTTCAAAAGAGTGTGAAGGTTACTTG 359 consensus_6182#1 TAGCAAAATAGGCAACCACAAGTCACTAACGAAAAT--AAACTGTCACTCGCCAAAACAG 164 * ** * * * **** *** * ** * *** * * consensus_6182#0 AGGACGAGTACACCAAGTTTCAAGCACACATGATAATTNTGCAAGAAAAGTTCACACACA 419 consensus_6182#1 AAGTCACATGGCCAAATAGCCATTTACATTCGCTGACCGAACCAAGTCACGTGTCG-AAA 223 * * * * * ** ** *** * * * * * * * * * * consensus_6182#0 TGCAAACTCTCAAAGACCTTTTCTCAAAGTTCGAAGATGCAAAGGAGAAATTACTTATCC 479 consensus_6182#1 TGACACCAATCAAAAGACAGCCATCTCCATCATGAATCATCAAGCCGACATGAAGAGGAT 283 ** * * ***** * ** * * *** ** ** * consensus_6182#0 AGTATGAACTGCAAAGGAAGAAGGAGAAGGCTACTCTGTCTGAACTCGAGAAAACATTTT 539 consensus_6182#1 AGAGAAACCTGGTTAGTTAAGAATGGAAGTTAACACCTCCAAGACTCTCCAACACTTGTT 343 ** * *** ** * * **** ** * * **** ** ** * ** consensus_6182#0 CAGAG--AAGATAACTAATGCAGAAGAATCTCTGAAGAAGATGAAGCAGGATGACAAATC 597 consensus_6182#1 TATCCTCAAGATAAAATATGACGGGTTTTCCTCGCACAAGGTTCACCTATAT---AATTC 400 * ******* *** * ** * * *** * * * ** ** ** consensus_6182#0 CATTGTCAACCTTCGCAAGTCCATTGGCTCATTCCTGGACCCGGATGATGAGTTTGGAGC 657 consensus_6182#1 ACCTTTGAAAGTTCGCATGTGTGC-AGCTTTTTCTTTGCAGAATTTATCGAGTGTCGCTT 459 * * ** ****** ** *** *** * * * **** * * consensus_6182#0 AGACGATGACTGAAACTGCTGTTGCCAAAATGGTC---CTTTTAGAACGCCGTGGATAGT 714 consensus_6182#1 GAAACTTGGG-GGACTCGTTCTTCAGAAAACCTTCACGCTCCTTTGAAGTCTTTGATAGA 518 * ** * * * * ** **** ** ** * * * * * ***** consensus_6182#0 ATTTGAGAATATCGATAG-TATATATATGAACAGAAGTTACAAAGTTCTGT-AGAGATTT 772 consensus_6182#1 ACTTTCAGATAATTTTGCCTGCGCAGATGTACAACAAAAAGGAACTGCACTCATACAAGT 578 * ** *** * * * *** *** * * ** * * * * * * * consensus_6182#0 GGTAGCATCATACAGTTAGGTACCACATCATCCGTT-ATTTTGTTTTAAGTTCATTGGGT 831 consensus_6182#1 AGAAGT-TCACACGCAAGAGAAATGAATTGGCCCTTCATCTTTCTTTCACAAACTTGCCC 637 * ** *** ** * * ** ** ** ** ** *** * *** consensus_6182#0 TAGGCG----GTTCCATCATCTG--TTTTAAATGCATCTTGGTCGATTCAACAGCAAGAG 885 consensus_6182#1 TTGGCATCCTGTACGATAGTCTGAATTTCTGTTGCAACACTGAAGATTGATCAG--AAAA 695 * *** ** * ** **** *** **** * * **** * *** * * consensus_6182#0 GCTCAAGATTGTTTAACCTCTTTGGCCTGATTTTCCTTCTTATATAGGAGTAAGTCATAA 945 consensus_6182#1 GTT---GGTCATGTAA-------------------------------------------- 708 * * * * * *** consensus_6182#0 CCAGTAGCTCGCTAAACTTACTTGTCAATATATTTGTATATTTGCAACAAATTATTCATA 1005 consensus_6182#1 ------------------------------------------------------------ consensus_6182#0 TACAGTATCAGATTTGTATATCAACAGCATAGAATTGCAATGAATCTTCCT 1056 consensus_6182#1 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||