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Oryza sativa
cluster # 6182 cluster # 6182       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6182#0 length = 1056 sequences # 3  
consensus_6182#1 length = 708 sequences # 1  

consensusID : consensus_6182#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1056
fasta sequence
                              [ACCCCTACACTCGCACACCGCACCAGCATTGTCGGCGGCGGCGAAGG-GAAGGCGAGCGGCGGCGNGAGGCGGGGAGGAGCCAAGGACCCAACCGACGCGCTCCGCTCCGACAAGAAGCGCCGCNNCATGGACGACTCCGACGACGCCGAGCTCGACAGTNACATGAAGGAGATCGTGTTGCTGCTGCGCCAGATCAAGGACAAGGCTCACAAGGATGGCCAGAAGAAGACCGAGCAAACCCTCTCCAGTGTTGCTACAGAAATTCAGACTATCGTACAGGATGCCAA-GGNAAGTTTGAGAAGGAAAGGC-AAATTATCT-TAAGTTCTATCAAAG-CTTCAAAAGAGTGTGAAGG-TTACTTGAGGACGAGTACACCAAGTTTCAAGC-ACACATGAT-AATTNTGC-AAG-AAAAGTTCACACACATGCAAACTCTCAAAGACCTTTTCTCAAAGTTCGAAGATGCAAAGGAGAAATTACTTATCCAGTATGAACTGCAAAGGAAGAAGGAGAAGGCTACTCTGTCTGAACTCGAGAAAACATTTTCAGAGAAGATAACTAATGCAGAAGAATCTCTGAAGAAGATGAAGCAGGATGACAAATCCATTGTCAACCTTCGCAAGTCCATTGGCTCATTCCTGGACCCGGATGATGAGTTTGGAGCAGACGATGACTGAAACTGCTGTTGCCAAAATGGTCCTTTTAGAACGCCGTGGATAGTATTTGAGAATATCGATAGTATATATATGAACAGAAGTTACAAAGTTCTGTAGAGATTTGGTAGCATCATACAGTTAGGTACCACATCATCCGTTATTTTGTTTTAAGTTCATTGGGTTAGGCGGTTCCATCATCTGTTTTAAATGCATCTTGGTCGATTCAACAGCAAGAGGCTCAAGATTGTTTAACCTCTTTGGCCTGATTTTCCTTCTTATATAGGAGTAAGTCATAACCAGTAGCTCGCTAAACTTACTTGTCAATATATTTGTATATTTGCAACAAATTATTCATATACAGTATCAGATTTGTATATCAACAGCATAGAATTGCAATGAATCTTCCT]

[+] EMBL C27117               [ACCCCTACACTCGCACACCGCACCAGCATTGTCGGCGGCGGCGAAGG GAAGGCGAGCGGCGGCGNGAGGCGGGGAGGAGCCAAGGACCCAACCGACGCGCTCCGCTCCGACAAGAAGCGCCGCNNCATGGACGACTCCGACGACGCCGAGCTCGACAGTNACATGAAGGAGATCGTGTTGCTGCTGCGCCAGATCAAGGACAAGGCTCACAAGGATGGCCAGAAGAAGACCGAGCAAACCCTCTCCAGTGTTGCTACAGAAATTCAGACTATCGTACAGGATGCCAA GGNAAGTTTGAGAAGGAAAGGC AAATTATCT TAAGTTCTATCAAAG CTTCAAAAGAGTGTGAAGG TTACTTGAGGACGAGTACACCAAGTTTCAAGC ACACATGAT AATTNTGC AAG AAAAGTTCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AK108121             [               CACCGCACCAGCGATGTCGGCGGCGGCGAAGGCGAAGGCGAGCGGCGGCGGGAGGCGGGGAGGAGCCAAGGACCCAACCGACGCGCTCCGCTCCGACAAGAAGCGCCGCGACATGGACGACTCCGACGACGCCGAGCTCGACAGTGACATGAAGGAGATCGTGTTGCTGCTGCGCCAGATCAAGGACAAGGCTCACAAGGATGGCCAGAAGAAGACCGAGCAAACCCTCTCCAGTGTTGCTACAGAAATTCAGACTATCGTACAGGATGCCAAGGGCAAGTTTGAGAAGGAAAGGCAAAATTATCTGAAAGTTCTATCAAAGACTTCAAAAGAGTGTGAAGGTTTACTGAAGAACGAGTACACCAAGTTTCAAGCAACACATGATAAATTCTGCAAAGAAAAAGCT GCACACATGCAAACTCTCAAAGACCTTTTCTCAAAGTTCGAAGATGCAAAGGAGAAATTACTTATCCAGTATGAACTGCAAAGGAAGAAGGAGAAGGCTACTCTGTCTGAACTCGAGAAAACATTTTCAGAGAAGATAACTAATGCAGAAGAATCTCTGAAGAAGATGAAGCAGGATGACAAATCCATTGTCAACCTTCGCAAGTCCATTGGCTCATTCCTGGACCCGGATGATGAGTTTGGAGCAGACGATGACTGAAACTGCTGTTGCCAAAATGGTCCTTTTAGAACGCCGTGGATAGTATTTGAGAATATCGATAGTATATATATGAACAGAAGTTACAAAGTTCTGTAGAGATTTGGTAGCATCATACAGTTAGGTACCACATCATCCGTTATTTTGTTTTAAGTTCATTGGGTTAGGCGGTTCCATCATCTGTTTTAAATGCATCTTGGTCGATTCAACAGCAAGAGGCTCAAGATTGTTTAACCTCTTTGGCCTGATTTTCCTTCTTATATAGGAGTAAGTCATAACCAGTAGCTCGCTAAACTTACTTGTCAATATATTTGTATATTTGCAACAAATTATTCATATACAGTATCAGATTTGTATATCAACAGCATAGAATTGCAATGAATCTTCCT]
[+] EMBL AU100794             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AACTCGAGAAAACATTTTCAGAGAAGATAACTAATGCAGAAGAATCTCTGAAGAAGATGAAGCAGGATGACAAATCCATTGTCAACCTTCGCAAGTCCATTGGCTCATTCCTGGACCCGGATGATGAGTTTGGAGCAGACGATGACTGAAACTGCTGTTGCCAAAATGGTCCTTTTAGAACGCCGTGGATAGTATTTGAGAATATCGATAGTATATATATGAACAGAAGTTACAAAGTTCTGTAGAGATTTGGTAGCATCATACAGTTAGGTACCACATCATCCGTTATTTTGTTTTAAGTTCATTGGGTTAGGCGGTTCCATCATCTGTTTTAAATGCATCTTGGTCGATTCAACAGCAAGAGGCTCAAGATTGTTTAACCTCTTTGGCCTGATTTTCCTTCTTATATAGGAGTAAGTCATAACCAGTAGCTCGCTAAACTTACTTGTCAATATATTTGTATATTTGCAACAAATTATTCATATACAGTATCAGATTTGTAaaaaaaa                          ]


>consensus_6182#0 ACCCCTACACTCGCACACCGCACCAGCATTGTCGGCGGCGGCGAAGGGAAGGCGAGCGGC GGCGNGAGGCGGGGAGGAGCCAAGGACCCAACCGACGCGCTCCGCTCCGACAAGAAGCGC CGCNNCATGGACGACTCCGACGACGCCGAGCTCGACAGTNACATGAAGGAGATCGTGTTG CTGCTGCGCCAGATCAAGGACAAGGCTCACAAGGATGGCCAGAAGAAGACCGAGCAAACC CTCTCCAGTGTTGCTACAGAAATTCAGACTATCGTACAGGATGCCAAGGNAAGTTTGAGA AGGAAAGGCAAATTATCTTAAGTTCTATCAAAGCTTCAAAAGAGTGTGAAGGTTACTTGA GGACGAGTACACCAAGTTTCAAGCACACATGATAATTNTGCAAGAAAAGTTCACACACAT GCAAACTCTCAAAGACCTTTTCTCAAAGTTCGAAGATGCAAAGGAGAAATTACTTATCCA GTATGAACTGCAAAGGAAGAAGGAGAAGGCTACTCTGTCTGAACTCGAGAAAACATTTTC AGAGAAGATAACTAATGCAGAAGAATCTCTGAAGAAGATGAAGCAGGATGACAAATCCAT TGTCAACCTTCGCAAGTCCATTGGCTCATTCCTGGACCCGGATGATGAGTTTGGAGCAGA CGATGACTGAAACTGCTGTTGCCAAAATGGTCCTTTTAGAACGCCGTGGATAGTATTTGA GAATATCGATAGTATATATATGAACAGAAGTTACAAAGTTCTGTAGAGATTTGGTAGCAT CATACAGTTAGGTACCACATCATCCGTTATTTTGTTTTAAGTTCATTGGGTTAGGCGGTT CCATCATCTGTTTTAAATGCATCTTGGTCGATTCAACAGCAAGAGGCTCAAGATTGTTTA ACCTCTTTGGCCTGATTTTCCTTCTTATATAGGAGTAAGTCATAACCAGTAGCTCGCTAA ACTTACTTGTCAATATATTTGTATATTTGCAACAAATTATTCATATACAGTATCAGATTT GTATATCAACAGCATAGAATTGCAATGAATCTTCCT



consensusID : consensus_6182#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 708
fasta sequence
                              [ATCAAACAAATATTAGCCCAATTAAAATCCAATACAAAACCCAATTAATATCCATACATCTGATAGCGCAATACATGTTTACTCACTACATGACCATATCCTATAATAGCAAAATAGGCAACCACAAGTCACTAACGAAAATAAACTGTCACTCGCCAAAACAGAAGTCACATGGCCAAATAGCCATTTACATTCGCTGACCGAACCAAGTCACGTGTCGAAATGACACCAATCAAAAGACAGCCATCTCCATCATGAATCATCAAGCCGACATGAAGAGGATAGAGAAACCTGGTTAGTTAAGAATGGAAGTTAACACCTCCAAGACTCTCCAACACTTGTTTATCCTCAAGATAAAATATGACGGGTTTTCCTCGCACAAGGTTCACCTATATAATTCACCTTTGAAAGTTCGCATGTGTGCAGCTTTTTCTTTGCAGAATTTATCGAGTGTCGCTTGAAACTTGGGGGACTCGTTCTTCAGAAAACCTTCACGCTCCTTTGAAGTCTTTGATAGAACTTTCAGATAATTTTGCCTGCGCAGATGTACAACAAAAAGGAACTGCACTCATACAAGTAGAAGTTCACACGCAAGAGAAATGAATTGGCCCTTCATCTTTCTTTCACAAACTTGCCCTTGGCATCCTGTACGATAGTCTGAATTTCTGTTGCAACACTGAAGATTGATCAGAAAAGTTGGTCATGTAA]

[+] EMBL CB624011             [ATCAAACAAATATTAGCCCAATTAAAATCCAATACAAAACCCAATTAATATCCATACATCTGATAGCGCAATACATGTTTACTCACTACATGACCATATCCTATAATAGCAAAATAGGCAACCACAAGTCACTAACGAAAATAAACTGTCACTCGCCAAAACAGAAGTCACATGGCCAAATAGCCATTTACATTCGCTGACCGAACCAAGTCACGTGTCGAAATGACACCAATCAAAAGACAGCCATCTCCATCATGAATCATCAAGCCGACATGAAGAGGATAGAGAAACCTGGTTAGTTAAGAATGGAAGTTAACACCTCCAAGACTCTCCAACACTTGTTTATCCTCAAGATAAAATATGACGGGTTTTCCTCGCACAAGGTTCACCTATATAATTCACCTTTGAAAGTTCGCATGTGTGCAGCTTTTTCTTTGCAGAATTTATCGAGTGTCGCTTGAAACTTGGGGGACTCGTTCTTCAGAAAACCTTCACGCTCCTTTGAAGTCTTTGATAGAACTTTCAGATAATTTTGCCTGCGCAGATGTACAACAAAAAGGAACTGCACTCATACAAGTAGAAGTTCACACGCAAGAGAAATGAATTGGCCCTTCATCTTTCTTTCACAAACTTGCCCTTGGCATCCTGTACGATAGTCTGAATTTCTGTTGCAACACTGAAGATTGATCAGAAAAGTTGGTCATGTAA]


>consensus_6182#1 ATCAAACAAATATTAGCCCAATTAAAATCCAATACAAAACCCAATTAATATCCATACATC TGATAGCGCAATACATGTTTACTCACTACATGACCATATCCTATAATAGCAAAATAGGCA ACCACAAGTCACTAACGAAAATAAACTGTCACTCGCCAAAACAGAAGTCACATGGCCAAA TAGCCATTTACATTCGCTGACCGAACCAAGTCACGTGTCGAAATGACACCAATCAAAAGA CAGCCATCTCCATCATGAATCATCAAGCCGACATGAAGAGGATAGAGAAACCTGGTTAGT TAAGAATGGAAGTTAACACCTCCAAGACTCTCCAACACTTGTTTATCCTCAAGATAAAAT ATGACGGGTTTTCCTCGCACAAGGTTCACCTATATAATTCACCTTTGAAAGTTCGCATGT GTGCAGCTTTTTCTTTGCAGAATTTATCGAGTGTCGCTTGAAACTTGGGGGACTCGTTCT TCAGAAAACCTTCACGCTCCTTTGAAGTCTTTGATAGAACTTTCAGATAATTTTGCCTGC GCAGATGTACAACAAAAAGGAACTGCACTCATACAAGTAGAAGTTCACACGCAAGAGAAA TGAATTGGCCCTTCATCTTTCTTTCACAAACTTGCCCTTGGCATCCTGTACGATAGTCTG AATTTCTGTTGCAACACTGAAGATTGATCAGAAAAGTTGGTCATGTAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6182#0      ACCCCTACACTCGCACACCGCACCAGCATTGTCGGCGGCGGCGAAGGGAAGGCGAGCGGC 60
consensus_6182#1      ------------------------------------------------------------
                                                                                  

consensus_6182#0      GGCGNGAGGCGGGGAGGAGCCAAGGACCCAACCGACGCGCTCCGCTCCGACAAGAAGCGC 120
consensus_6182#1      ------------------------------------------------------------
                                                                                  

consensus_6182#0      CGCNNCATGGACGACTCCGACGACGCCGAGCTCGACAGTNACATGAAGGAGATCGTGTTG 180
consensus_6182#1      ------------------------------------------------------------
                                                                                  

consensus_6182#0      CTGCTGCGCCAGATCAAGGACAAGGCTCACAAGGATGGCCAGAAGAAGACCGAGCAAACC 240
consensus_6182#1      -------ATCAAA-CAAATATTAGCCCAATTAAAAT--CCAATACAAAACCCAATTAATA 50
                               ** * ***  *  ** *  *  *  **  ***  * ** *** *   **  

consensus_6182#0      CTCTCCAGTGTTGCTACAGAAATTCAGACTATCGTACAGGATGCCAAGGNAAGTTTGAGA 300
consensus_6182#1      -TCCATACATCTGATAGCGCAATACATGTTTACTCACTACATGACCATAT---CCTATAA 106
                       **   *    ** **  * *** **   *  *  **   *** * *        *   *

consensus_6182#0      AGGAAAGGCAAATTATCTTAAGTT-CTATCAAAGCTTCAAAAGAGTGTGAAGGTTACTTG 359
consensus_6182#1      TAGCAAAATAGGCAACCACAAGTCACTAACGAAAAT--AAACTGTCACTCGCCAAAACAG 164
                        * **   *    * *  ****  *** * **  *  ***              *   *

consensus_6182#0      AGGACGAGTACACCAAGTTTCAAGCACACATGATAATTNTGCAAGAAAAGTTCACACACA 419
consensus_6182#1      AAGTCACATGGCCAAATAGCCATTTACATTCGCTGACCGAACCAAGTCACGTGTCG-AAA 223
                      * * *   *   * **    **   ***   * * *     * *    *  *  *  * *

consensus_6182#0      TGCAAACTCTCAAAGACCTTTTCTCAAAGTTCGAAGATGCAAAGGAGAAATTACTTATCC 479
consensus_6182#1      TGACACCAATCAAAAGACAGCCATCTCCATCATGAATCATCAAGCCGACATGAAGAGGAT 283
                      **  * *  *****   *     **    *    *      ***  ** ** *       

consensus_6182#0      AGTATGAACTGCAAAGGAAGAAGGAGAAGGCTACTCTGTCTGAACTCGAGAAAACATTTT 539
consensus_6182#1      AGAGAAACCTGGTTAGTTAAGAATGGAAGTTAACACCTCCAAGACTCTCCAACACTTGTT 343
                      **    * ***   **  *  *   ****   ** *   *   ****   ** ** * **

consensus_6182#0      CAGAG--AAGATAACTAATGCAGAAGAATCTCTGAAGAAGATGAAGCAGGATGACAAATC 597
consensus_6182#1      TATCCTCAAGATAAAATATGACGGGTTTTCCTCGCACAAGGTTCACCTATAT---AATTC 400
                       *     *******   ***  *     **   * * *** *  * *   **   ** **

consensus_6182#0      CATTGTCAACCTTCGCAAGTCCATTGGCTCATTCCTGGACCCGGATGATGAGTTTGGAGC 657
consensus_6182#1      ACCTTTGAAAGTTCGCATGTGTGC-AGCTTTTTCTTTGCAGAATTTATCGAGTGTCGCTT 459
                         * * **  ****** **      ***  *** * *       *   **** * *   

consensus_6182#0      AGACGATGACTGAAACTGCTGTTGCCAAAATGGTC---CTTTTAGAACGCCGTGGATAGT 714
consensus_6182#1      GAAACTTGGG-GGACTCGTTCTTCAGAAAACCTTCACGCTCCTTTGAAGTCTTTGATAGA 518
                        *   **   * *   * * **   ****   **   **  *   * * * * ***** 

consensus_6182#0      ATTTGAGAATATCGATAG-TATATATATGAACAGAAGTTACAAAGTTCTGT-AGAGATTT 772
consensus_6182#1      ACTTTCAGATAATTTTGCCTGCGCAGATGTACAACAAAAAGGAACTGCACTCATACAAGT 578
                      * **    ***    *   *    * *** ***  *   *  ** * *  * * * *  *

consensus_6182#0      GGTAGCATCATACAGTTAGGTACCACATCATCCGTT-ATTTTGTTTTAAGTTCATTGGGT 831
consensus_6182#1      AGAAGT-TCACACGCAAGAGAAATGAATTGGCCCTTCATCTTTCTTTCACAAACTTGCCC 637
                       * **  *** **      * *    **   ** ** ** **  *** *     ***   

consensus_6182#0      TAGGCG----GTTCCATCATCTG--TTTTAAATGCATCTTGGTCGATTCAACAGCAAGAG 885
consensus_6182#1      TTGGCATCCTGTACGATAGTCTGAATTTCTGTTGCAACACTGAAGATTGATCAG--AAAA 695
                      * ***     ** * **  ****  ***    **** *   *  **** * ***  * * 

consensus_6182#0      GCTCAAGATTGTTTAACCTCTTTGGCCTGATTTTCCTTCTTATATAGGAGTAAGTCATAA 945
consensus_6182#1      GTT---GGTCATGTAA-------------------------------------------- 708
                      * *   * *  * ***                                            

consensus_6182#0      CCAGTAGCTCGCTAAACTTACTTGTCAATATATTTGTATATTTGCAACAAATTATTCATA 1005
consensus_6182#1      ------------------------------------------------------------
                                                                                  

consensus_6182#0      TACAGTATCAGATTTGTATATCAACAGCATAGAATTGCAATGAATCTTCCT 1056
consensus_6182#1      ---------------------------------------------------
                                                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)