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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6191#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 4833 fasta sequence
[CATGGCCGCCGGCGACCACCTGCGGCCGGGCTCCTACCTCGGCGACGTCTCCGCGCTCTCCTTCCTCCCCTCCTCCCCCCGCCCTCTTCTCCTCGCCGGCACCGGATCGGAGCTGCTCGTCTACGACGTCGACGCCGCCAGGCTTGTCGCCTCCTTCCAAGTGTTCGACGGCGTCCGCGTCCACGGCATCCAGCCCCGCTGCCCGGACGGCCCGTCTCCTGGCGATGTCACCGTGTTGGTGTTCGGTGAGAGGAGGGTGAAGATTTTCAGGATTCGCGCCGACTTCGAGGATGGCGAAGCGTGCGGCGTGCGGTTGGAGTTGGAGCAGAGGCTCCCCGGATTTGATCACTGGGTGCTGGACGCCTGCTTCCTGGAGGCTGATGGGCTGCTCGCGATCGGTTTGAGTGACAATTCAGTGGCATTATGGGATTTGAGCCAGCGTGTGTTGCATGCCCGAGTGAAATCGCCAGAGAAGTGCCTACTGTATTCGATGAGAATGTGGGGAAACTCTCTTGAATCTCTTCTCGTGGCTTCTGGAACAATTTTAAATGAGATTCTTATTTGGAAAATTGTACCCCGAGCTCTGGAAAAATCCTTGTTATGCTCATATAAGAGCAACACTCTCGGTGTAGAGGACTATGAGAATATGCATATTAGTGATAAGCAATATATAACAATTCATCTTGGAAGGTTAAAGGAACATGAAGGTTCAATATTTAGAATAGCTTGGTCCTCTGATGGATCAAAGTTCATGTCTGTTTCCGATGACCGTAGTGCTCGCATCTGGATGTTGAGTTCTCAGTCACAGAACTTTGTCAATAAGGCAGATGGACAAAATGATGTTCAGATTATACCGAAACTCACACTTTTTGGGCATAGTGCTAGAATATGGGATTGCTATGTATCTAATTCTTTAGTTATTACAGTCGGCGAGGATTGTTCTTGTTGCATCTGGGCTATGGACGGAAAGCTAATCAAGAAGTTCAGGGAACACATCGGCCGAGGAATATGGCGGTGTTTATATGATCCAAGCACACTACTGCTTGCCACTGCTGGGTTTGATTCAGCCATCAAAGTGCACCATCTTTATAACTCATCTTGTCATGACAAAATGGAAGACAAGGTGGTCTCAGACGATGTCAATTATGATTCTGAGGTCTTTTCAATATCATCCCCTACAGTGTCAGGACAGTATGGGCCCATGGACAGCAAAAGTGAGTATGTACGATACCTACACTTTGTAAAAGAAAATGATCTCTATGTTGCCACAAACAATGGATATCTGCATCATGCTGAGCTCTCTAATTCCAACAATGTAAGATGGACCAAGGTTACTCAAGTTGCTGAGGTGGCACCGATTATTTGCATGGATGTTATGGTAATGCACTCAGATATTTCACTGAATAGGGATGATATCATTGCCCTTGGAGATGGACGTGGAAATGTTACTGTTGTCCATTTAACTGCCTGTGATCTTGGACCTAAAGTGAATTCATCTTTTACCTGGCCAGCAGAAAAAGATAGGCAGCTACTAGGAGTATACTGGTGCAAATCTCTTGAATGTAGACACATTTTCACAGCTGATCCTAGAGGTGTGCTTAAGTTATGGGACATAAGGAATGCCCTTTTTTCAAATACCCTTGATATCACTACATCTCAGAAGGTTCCTCTTATTGCTGTGTTTGAATCTTCCTTTGGGGCAAGAATCATGTGCTTAGATGCGTTTCCTCAGGACGAGGTCCTTGTAGCTGGTGATAAGAAGGGTAACATAACTGCCTTTCACTTCCCTAAAGTACTGGTAGAACATGAGAGCTGTGGGACGCAACAGAATATGCCTTCATGTGATCGTTTTAAAGGAGCTCATGGAATTTCTAGTGTCACAAGTGTTCGTATAATTACCTCAACTTCTGATCATCTTCAAATTCACACCACAGGGGGAGACGGTTGCATTTGCTTTTTCAAGTATGACAGAAATGTGCAAAAGATTGAATTTTTTGGAATGAGACAAGTAAAAGAGTTGGGCACCGTTCAATCCATCTTTCCTCCTCATGCCTCAGAAAAGCAATTGCTTAGCACCTATGCAATAGGTTTCACTTCTGCCGATTTTATCATTTGGGACCTTGAAAATGAAACAAAGCTGCTTCAAATATCCTGTGGAGGGTGGCGCCGTCCTTATTCATATTATCTTGGCATGGTCCCTGAGTATCAGAATTGTTTTGCCTTTGTTAAGGATCATAACATTCACATTCATAGGCACTGGGCACCATGTCAAGACAAGAAATTGCTTCCTCAAGTTTTCCATATGCAGTTCCATGGAAGAGAAGTGCACTCTTTGTGCTTCATAGATCCAGCAGGCTATTCAAATCCTGAGAAGAGCTCAAATCTGTATATTGCAACAGGATGTGAAGATGGAACCATGCGACTTACAGGGAACTCAATTAATAGTGCTGGAAAATGGTGTTCCTCCAAGCTGCTGGGGGAGCATGTTGGTGGACCAGCTGTGAGAGCGACATGCTTCGTGCAGAAGGGCTACACATCGTTAGATAAATCATGTAACATCATCCCCAATGGCAACTCTGATGACACTTTAGTCAAAAACAAGGATAACATTTCCTTATTAATATCCGTTGGATCAAAGCAAGTCCTGACTACTTGGGTTTTACAGCCTAAGGTTGCAGAAAATAGACATATCTGTTCTAGTGGCTTAGATGTAGACTCCAAGCAAAGCTTGAAAGGTGATTCAGCCATGACATTTCAATGGCTTTCTACCCACATGCCTCCAAAGCTTACCAATAGGTTGAAAACTGGCAATGTAAAAAATAATAATGAGGAAGGGGATTCCTCTATGATGCAACCCAACCAGTTTATTGTGGATCAGCTGGAAAATGACTGGCGTTATCTTTCGGTTACAGCATTTCTTTTGGAACATCCTTCCACCAATTCGACAGTGTGTTTTGTTGTTGCTGCTTGCTCTGACGCTACAGTCGTGCTCCGTGCTCTTCTTTTGCCTTCTAGGCTATGGTTTGATGTTGCCTTGTTGGCTCCACAGGGATCACCAGTTCTGGTGCTCAAGCATATTATTGCTGCAGCTAGTGTCAACTGCAAAGACACCGCAGACCATGGAGATACATACATTGTTGTGAGTGGATCTACAGATGGTAGCATTACTTTCTGGGACCTTACAGATACTATTCATGGATTTATGCAACTAGTATCAGAGACTCAACCACACATGGTTATTGATTGCCAAAAGCGGCCCAGAACAGGAAGAGGAAGTCAAGGCGGTCGGCGCAGGTGGAGAACACTGCCGGGCCGTTCTTTGAAAAAGATAAATAAAGAGACATCGATCCCTGATGGGAGCATCCCGAATACTCCAAATGCCACTGAAAATACATCTGAAACTTCTAATGTGGAAGAAACTGATGCCACAAACCAGAACTATGCATTCTCAAATTTGCAATCGTGTAATATACCTGAAGTGACACCAATGCACAGATTCTCCGGTGTTCACCAGTCAGGCGTCAACTGCCTCCATGTCTCAGAGATGAGGGCTTGCTCGTACTCGACACCTGGCATGTCTTACTGTGTCATAAGCGGTGGGGATGATCAAGCTGTTCACTGTTTCAGTTTTACATTAGGATCTCTTCAGGATTGCGCAATAAATACAAGCCTAGACTCACCTGACAATGGTGCAGTTAAAATTATTTGTCAACATAGGGTTCCTTCTGCCCACAGTTCAGCAGTTAAAGGCATCTGGACGGATGGCATATGGGCTTTCTCTACTGGCCTTGATCAAAGAGTAAGATGTTGGAAGATGGAGTCATCTGGCAAATTCACTGAGTATTCCCATGCTATCATCAGCGTACCTGAGCCAGAAACTTTGGATGTTGTACATGACCGTGCAGAGAGGAAATACTGGGTTGCTGTTGCTGGAAGGGGAATGCAAATGGTTGAGTTCTTGTCAGCAGAAAATGACGAGGAAGAAATATCAAAATGACTCTTTTTTTTAGATGAGATGTTAGTTCATTTGGTGTGAAACAGGATGCCCACCAGAGAACTGGAATTTTATGTGGACTTCTGCAACTTGATCAAAACTTTGAAATATGTCAGGCAGAACGTACACAGCATGCCGACCAGGTTGGTGCGGGTCTGCTTGAACAACCTCATCGCGCTGATCGAGCAGTGGATTGTGCGAAGTTTAAGCTGTAGTGCTGTACTGATTTCACTCATGGTGGACGGTGACAATGGCAAGTGGAACTGTCCGTCTGTCCGTCCAAGTTGATGAGAGCTTGTCACCTAGTGGATTTTCCTGGCTGGACGAGCAGTGGCGGCGTGTCATGACAACTAGGAAGTATGCAACTAATGACTAACGTGACATGTTTGTTGGTAGGAGTGATTCTGCAATCTCTAACCGACCATGAACCCATGATGTTAACTGGTGAAAGATGACCAGATTCAAGAGTGATTCTGTAGATTCTTGAACCAGCCATGAGGCCGTGATGTTAACTGGTGATAAGTGATCAGATTCAAAAACATTATTTTTAGTATTGTAAAGGGCTTTGAGCTTCATCTAAGGTCCCTTTCTTTCTTTTTGCTGATGCTGTGGCAAACGTTTCTCAATTGTGGTGGCAGATGCTGCACAAGATGGTGTGCTTTGCTTTGGTCCTTCCTGGTCCATTTATTCCGTCAGTCAGGCTTTCAGACTTCAGAAGTTCAGAGACTTCATTTAAACTGGTGTGCCTCTGTCTAGAATCCTATGTTGACTGGAGTTATATATCTGTCTTGACCGGTCAATGCCCAAATTTTGATTGGTGATGATAAAACTTAAAACAA]
[+] EMBL AK121627 [CATGGCCGCCGGCGACCACCTGCGGCCGGGCTCCTACCTCGGCGACGTCTCCGCGCTCTCCTTCCTCCCCTCCTCCCCCCGCCCTCTTCTCCTCGCCGGCACCGGATCGGAGCTGCTCGTCTACGACGTCGACGCCGCCAGGCTTGTCGCCTCCTTCCAAGTGTTCGACGGCGTCCGCGTCCACGGCATCCAGCCCCGCTGCCCGGACGGCCCGTCTCCTGGCGATGTCACCGTGTTGGTGTTCGGTGAGAGGAGGGTGAAGATTTTCAGGATTCGCGCCGACTTCGAGGATGGCGAAGCGTGCGGCGTGCGGTTGGAGTTGGAGCAGAGGCTCCCCGGATTTGATCACTGGGTGCTGGACGCCTGCTTCCTGGAGGCTGATGGGCTGCTCGCGATCGGTTTGAGTGACAATTCAGTGGCATTATGGGATTTGAGCCAGCGTGTGTTGCATGCCCGAGTGAAATCGCCAGAGAAGTGCCTACTGTATTCGATGAGAATGTGGGGAAACTCTCTTGAATCTCTTCTCGTGGCTTCTGGAACAATTTTAAATGAGATTCTTATTTGGAAAATTGTACCCCGAGCTCTGGAAAAATCCTTGTTATGCTCATATAAGAGCAACACTCTCGGTGTAGAGGACTATGAGAATATGCATATTAGTGATAAGCAATATATAACAATTCATCTTGGAAGGTTAAAGGAACATGAAGGTTCAATATTTAGAATAGCTTGGTCCTCTGATGGATCAAAGTTCATGTCTGTTTCCGATGACCGTAGTGCTCGCATCTGGATGTTGAGTTCTCAGTCACAGAACTTTGTCAATAAGGCAGATGGACAAAATGATGTTCAGATTATACCGAAACTCACACTTTTTGGGCATAGTGCTAGAATATGGGATTGCTATGTATCTAATTCTTTAGTTATTACAGTCGGCGAGGATTGTTCTTGTTGCATCTGGGCTATGGACGGAAAGCTAATCAAGAAGTTCAGGGAACACATCGGCCGAGGAATATGGCGGTGTTTATATGATCCAAGCACACTACTGCTTGCCACTGCTGGGTTTGATTCAGCCATCAAAGTGCACCATCTTTATAACTCATCTTGTCATGACAAAATGGAAGACAAGGTGGTCTCAGACGATGTCAATTATGATTCTGAGGTCTTTTCAATATCATCCCCTACAGTGTCAGGACAGTATGGGCCCATGGACAGCAAAAGTGAGTATGTACGATACCTACACTTTGTAAAAGAAAATGATCTCTATGTTGCCACAAACAATGGATATCTGCATCATGCTGAGCTCTCTAATTCCAACAATGTAAGATGGACCAAGGTTACTCAAGTTGCTGAGGTGGCACCGATTATTTGCATGGATGTTATGGTAATGCACTCAGATATTTCACTGAATAGGGATGATATCATTGCCCTTGGAGATGGACGTGGAAATGTTACTGTTGTCCATTTAACTGCCTGTGATCTTGGACCTAAAGTGAATTCATCTTTTACCTGGCCAGCAGAAAAAGATAGGCAGCTACTAGGAGTATACTGGTGCAAATCTCTTGAATGTAGACACATTTTCACAGCTGATCCTAGAGGTGTGCTTAAGTTATGGGACATAAGGAATGCCCTTTTTTCAAATACCCTTGATATCACTACATCTCAGAAGGTTCCTCTTATTGCTGTGTTTGAATCTTCCTTTGGGGCAAGAATCATGTGCTTAGATGCGTTTCCTCAGGACGAGGTCCTTGTAGCTGGTGATAAGAAGGGTAACATAACTGCCTTTCACTTCCCTAAAGTACTGGTAGAACATGAGAGCTGTGGGACGCAACAGAATATGCCTTCATGTGATCGTTTTAAAGGAGCTCATGGAATTTCTAGTGTCACAAGTGTTCGTATAATTACCTCAACTTCTGATCATCTTCAAATTCACACCACAGGGGGAGACGGTTGCATTTGCTTTTTCAAGTATGACAGAAATGTGCAAAAGATTGAATTTTTTGGAATGAGACAAGTAAAAGAGTTGGGCACCGTTCAATCCATCTTTCCTCCTCATGCCTCAGAAAAGCAATTGCTTAGCACCTATGCAATAGGTTTCACTTCTGCCGATTTTATCATTTGGGACCTTGAAAATGAAACAAAGCTGCTTCAAATATCCTGTGGAGGGTGGCGCCGTCCTTATTCATATTATCTTGGCATGGTCCCTGAGTATCAGAATTGTTTTGCCTTTGTTAAGGATCATAACATTCACATTCATAGGCACTGGGCACCATGTCAAGACAAGAAATTGCTTCCTCAAGTTTTCCATATGCAGTTCCATGGAAGAGAAGTGCACTCTTTGTGCTTCATAGATCCAGCAGGCTATTCAAATCCTGAGAAGAGCTCAAATCTGTATATTGCAACAGGATGTGAAGATGGAACCATGCGACTTACAGGGAACTCAATTAATAGTGCTGGAAAATGGTGTTCCTCCAAGCTGCTGGGGGAGCATGTTGGTGGACCAGCTGTGAGAGCGACATGCTTCGTGCAGAAGGGCTACACATCGTTAGATAAATCATGTAACATCATCCCCAATGGCAACTCTGATGACACTTTAGTCAAAAACAAGGATAACATTTCCTTATTAATATCCGTTGGATCAAAGCAAGTCCTGACTACTTGGGTTTTACAGCCTAAGGTTGCAGAAAATAGACATATCTGTTCTAGTGGCTTAGATGTAGACTCCAAGCAAAGCTTGAAAGGTGATTCAGCCATGACATTTCAATGGCTTTCTACCCACATGCCTCCAAAGCTTACCAATAGGTTGAAAACTGGCAATGTAAAAAATAATAATGAGGAAGGGGATTCCTCTATGATGCAACCCAACCAGTTTATTGTGGATCAGCTGGAAAATGACTGGCGTTATCTTTCGGTTACAGCATTTCTTTTGGAACATCCTTCCACCAATTCGACAGTGTGTTTTGTTGTTGCTGCTTGCTCTGACGCTACAGTCGTGCTCCGTGCTCTTCTTTTGCCTTCTAGGCTATGGTTTGATGTTGCCTTGTTGGCTCCACAGGGATCACCAGTTCTGGTGCTCAAGCATATTATTGCTGCAGCTAGTGTCAACTGCAAAGACACCGCAGACCATGGAGATACATACATTGTTGTGAGTGGATCTACAGATGGTAGCATTACTTTCTGGGACCTTACAGATACTATTCATGGATTTATGCAACTAGTATCAGAGACTCAACCACACATGGTTATTGATTGCCAAAAGCGGCCCAGAACAGGAAGAGGAAGTCAAGGCGGTCGGCGCAGGTGGAGAACACTGCCGGGCCGTTCTTTGAAAAAGATAAATAAAGAGACATCGATCCCTGATGGGAGCATCCCGAATACTCCAAATGCCACTGAAAATACATCTGAAACTTCTAATGTGGAAGAAACTGATGCCACAAACCAGAACTATGCATTCTCAAATTTGCAATCGTGTAATATACCTGAAGTGACACCAATGCACAGATTCTCCGGTGTTCACCAGTCAGGCGTCAACTGCCTCCATGTCTCAGAGATGAGGGCTTGCTCGTACTCGACACCTGGCATGTCTTACTGTGTCATAAGCGGTGGGGATGATCAAGCTGTTCACTGTTTCAGTTTTACATTAGGATCTCTTCAGGATTGCGCAATAAATACAAGCCTAGACTCACCTGACAATGGTGCAGTTAAAATTATTTGTCAACATAGGGTTCCTTCTGCCCACAGTTCAGCAGTTAAAGGCATCTGGACGGATGGCATATGGGCTTTCTCTACTGGCCTTGATCAAAGAGTAAGATGTTGGAAGATGGAGTCATCTGGCAAATTCACTGAGTATTCCCATGCTATCATCAGCGTACCTGAGCCAGAAACTTTGGATGTTGTACATGACCGTGCAGAGAGGAAATACTGGGTTGCTGTTGCTGGAAGGGGAATGCAAATGGTTGAGTTCTTGTCAGCAGAAAATGACGAGGAAGAAATATCAAAATGACTCTTTTTTTTAGATGAGATGTTAGTTCATTTGGTGTGAAACAGGATGCCCACCAGAGAACTGGAATTTTATGTGGACTTCTGCAACTTGATCAAAACTTTGAAATATGTCAGGCAGAACGTACACAGCATGCCGACCAGGTTGGTGCGGGTCTGCTTGAACAACCTCATCGCGCTGATCGAGCAGTGGATTGTGCGAAGTTTAAGCTGTAGTGCTGTACTGATTTCACTCATGGTGGACGGTGACAATGGCAAGTGGAACTGTCCGTCTGTCCGTCCAAGTTGATGAGAGCTTGTCACCTAGTGGATTTTCCTGGCTGGACGAGCAGTGGCGGCGTGTCATGACAACTAGGAAGTATGCAACTAATGACTAACGTGACATGTTTGTTGGTAGGAGTGATTCTGCAATCTCTAACCGACCATGAACCCATGATGTTAACTGGTGAAAGATGACCAGATTCAAGAGTGATTCTGTAGATTCTTGAACCAGCCATGAGGCCGTGATGTTAACTGGTGATAAGTGATCAGATTCAAAAACATTATTTTTAGTATTGTAAAGGGCTTTGAGCTTCATCTAAGGTCCCTTTCTTTCTTTTTGCTGATGCTGTGGCAAACGTTTCTCAATTGTGGTGGCAGATGCTGCACAAGATGGTGTGCTTTGCTTTGGTCCTTCCTGGTCCATTTATTCCGTCAGTCAGGCTTTCAGACTTCAGAAGTTCAGAGACTTCATTTAAACTGGTGTGCCTCTGTCTAGAATCCTATGTTGACTGGAGTTATATATCTGTCTTGACCGGTCAATGCCCAAATTTTGATTGGTGATGATAAAACTTAAAACAA]
[+] EMBL D43384 [ AAATGCCACTGAAAATACATCTGAAACTTCTAATGTGGAAGAAACTGATGCCACAAACCAGAACTATGCATTCTCAAATTTGCAATCGTGTAATATACCTGAGGTGACACCANTGCACAGATTCTCCGGTGTTCACCAGTCAGGCGTCAACTGCCTCCATGTCTCAGAGATGAGGGCTTGCTCGTACTCGACACCTGGCATGTNTTACTGTGTCATAAGCGGTGGGGATGATCAAGCTGTTCACTGTTTCAGNTTTACATTAGGNTCTCTTCAGGATTGCGCAGTAANTACAAGCCTAGACTCACCTGACAATGG ]
consensusID : consensus_6191#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence
[GGGGGAACTCCAAAGTGGTTGCGTTCTTGTTCCCCCAAAGAAAGCGCGCGGGGGAGAAAGTTCCAGAAAGCCTTTTTTTTAAGTTGAGATGGTTAGGTTCCTTTGGGCGGTAACCAAGGATGCCCCCCAAGAAGACCGGGGATTGTTAATGGGGACTTTTGCAACTTGGATCAAAACTTTTAAATTATGTCCAAACAAAAACGTACCCAAGCATGCCCGACCTTTTGGGTTGGTCCGGGTTTTGCTTTAACAACCCTCATTGCCCTTGATCGAGCAGTGGATTGTGCGAAGTTTAAGCCGTAGGGCTGTACTGGTATCACTCATGGGTGGACGGTGACAATGGCAAGTGGAACTGTCCGTCTGTCCGTCCAAGTTGATGAGAGCTTGTCACCTAGTGGATTTTCCTGGCTGGACGAGCAGGGGCGGCGTGTCATGACAACTAGGAAGTATGCAACTAATGACTAACGTGACATGTTTGTTGGTAGGAGTGTTCTGCAATCTTTAACCAACCATGAACCCATGATGTTAACTGGTGAAAGATGACCAGATTCAAGAGTGATTCTGTAATCTTGATTCTTGAACCAGCCATGAGGCCGTGATGTTAACTGGTGAAAAGTGATCAGATTCAAAAACATTATTTTTAGTATTGTAAAGGGCTTTGAGCCTTTGAGCTTCAAAAAAAAAAAAAA]
[-] EMBL CA763165 [GGGGGAACTCCAAAGTGGTTGCGTTCTTGTTCCCCCAAAGAAAGCGCGCGGGGGAGAAAGTTCCAGAAAGCCTTTTTTTTAAGTTGAGATGGTTAGGTTCCTTTGGGCGGTAACCAAGGATGCCCCCCAAGAAGACCGGGGATTGTTAATGGGGACTTTTGCAACTTGGATCAAAACTTTTAAATTATGTCCAAACAAAAACGTACCCAAGCATGCCCGACCTTTTGGGTTGGTCCGGGTTTTGCTTTAACAACCCTCATTGCCCTTGATCGAGCAGTGGATTGTGCGAAGTTTAAGCCGTAGGGCTGTACTGGTATCACTCATGGGTGGACGGTGACAATGGCAAGTGGAACTGTCCGTCTGTCCGTCCAAGTTGATGAGAGCTTGTCACCTAGTGGATTTTCCTGGCTGGACGAGCAGGGGCGGCGTGTCATGACAACTAGGAAGTATGCAACTAATGACTAACGTGACATGTTTGTTGGTAGGAGTGTTCTGCAATCTTTAACCAACCATGAACCCATGATGTTAACTGGTGAAAGATGACCAGATTCAAGAGTGATTCTGTAATCTTGATTCTTGAACCAGCCATGAGGCCGTGATGTTAACTGGTGAAAAGTGATCAGATTCAAAAACATTATTTTTAGTATTGTAAAGGGCTTTGAGCCTTTGAGCTTCAAAAAAAAAAAAAA]
consensusID : consensus_6191#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 156 fasta sequence
[GCCATGAGGCCGTGATGTTAACTGGTGATAAGTGATCAGATTCAAAAACATTATTTTTAGTATTGTAAAGGGCTTTGAGCTTCATCTAAGGTCCCTTTCTTTCTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU181812 [GCCATGAGGCCGTGATGTTAACTGGTGATAAGTGATCAGATTCAAAAACATTATTTTTAGTATTGTAAAGGGCTTTGAGCTTCATCTAAGGTCCCTTTCTTTCTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6191#0 CATGGCCGCCGGCGACCACCTGCGGCCGGGCTCCTACCTCGGCGACGTCTCCGCGCTCTC 60
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 CTTCCTCCCCTCCTCCCCCCGCCCTCTTCTCCTCGCCGGCACCGGATCGGAGCTGCTCGT 120
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 CTACGACGTCGACGCCGCCAGGCTTGTCGCCTCCTTCCAAGTGTTCGACGGCGTCCGCGT 180
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 CCACGGCATCCAGCCCCGCTGCCCGGACGGCCCGTCTCCTGGCGATGTCACCGTGTTGGT 240
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 GTTCGGTGAGAGGAGGGTGAAGATTTTCAGGATTCGCGCCGACTTCGAGGATGGCGAAGC 300
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 GTGCGGCGTGCGGTTGGAGTTGGAGCAGAGGCTCCCCGGATTTGATCACTGGGTGCTGGA 360
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 CGCCTGCTTCCTGGAGGCTGATGGGCTGCTCGCGATCGGTTTGAGTGACAATTCAGTGGC 420
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 ATTATGGGATTTGAGCCAGCGTGTGTTGCATGCCCGAGTGAAATCGCCAGAGAAGTGCCT 480
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 ACTGTATTCGATGAGAATGTGGGGAAACTCTCTTGAATCTCTTCTCGTGGCTTCTGGAAC 540
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 AATTTTAAATGAGATTCTTATTTGGAAAATTGTACCCCGAGCTCTGGAAAAATCCTTGTT 600
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 ATGCTCATATAAGAGCAACACTCTCGGTGTAGAGGACTATGAGAATATGCATATTAGTGA 660
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 TAAGCAATATATAACAATTCATCTTGGAAGGTTAAAGGAACATGAAGGTTCAATATTTAG 720
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 AATAGCTTGGTCCTCTGATGGATCAAAGTTCATGTCTGTTTCCGATGACCGTAGTGCTCG 780
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 CATCTGGATGTTGAGTTCTCAGTCACAGAACTTTGTCAATAAGGCAGATGGACAAAATGA 840
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 TGTTCAGATTATACCGAAACTCACACTTTTTGGGCATAGTGCTAGAATATGGGATTGCTA 900
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 TGTATCTAATTCTTTAGTTATTACAGTCGGCGAGGATTGTTCTTGTTGCATCTGGGCTAT 960
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 GGACGGAAAGCTAATCAAGAAGTTCAGGGAACACATCGGCCGAGGAATATGGCGGTGTTT 1020
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 ATATGATCCAAGCACACTACTGCTTGCCACTGCTGGGTTTGATTCAGCCATCAAAGTGCA 1080
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 CCATCTTTATAACTCATCTTGTCATGACAAAATGGAAGACAAGGTGGTCTCAGACGATGT 1140
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 CAATTATGATTCTGAGGTCTTTTCAATATCATCCCCTACAGTGTCAGGACAGTATGGGCC 1200
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 CATGGACAGCAAAAGTGAGTATGTACGATACCTACACTTTGTAAAAGAAAATGATCTCTA 1260
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 TGTTGCCACAAACAATGGATATCTGCATCATGCTGAGCTCTCTAATTCCAACAATGTAAG 1320
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 ATGGACCAAGGTTACTCAAGTTGCTGAGGTGGCACCGATTATTTGCATGGATGTTATGGT 1380
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 AATGCACTCAGATATTTCACTGAATAGGGATGATATCATTGCCCTTGGAGATGGACGTGG 1440
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 AAATGTTACTGTTGTCCATTTAACTGCCTGTGATCTTGGACCTAAAGTGAATTCATCTTT 1500
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 TACCTGGCCAGCAGAAAAAGATAGGCAGCTACTAGGAGTATACTGGTGCAAATCTCTTGA 1560
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 ATGTAGACACATTTTCACAGCTGATCCTAGAGGTGTGCTTAAGTTATGGGACATAAGGAA 1620
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 TGCCCTTTTTTCAAATACCCTTGATATCACTACATCTCAGAAGGTTCCTCTTATTGCTGT 1680
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 GTTTGAATCTTCCTTTGGGGCAAGAATCATGTGCTTAGATGCGTTTCCTCAGGACGAGGT 1740
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 CCTTGTAGCTGGTGATAAGAAGGGTAACATAACTGCCTTTCACTTCCCTAAAGTACTGGT 1800
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 AGAACATGAGAGCTGTGGGACGCAACAGAATATGCCTTCATGTGATCGTTTTAAAGGAGC 1860
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 TCATGGAATTTCTAGTGTCACAAGTGTTCGTATAATTACCTCAACTTCTGATCATCTTCA 1920
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 AATTCACACCACAGGGGGAGACGGTTGCATTTGCTTTTTCAAGTATGACAGAAATGTGCA 1980
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 AAAGATTGAATTTTTTGGAATGAGACAAGTAAAAGAGTTGGGCACCGTTCAATCCATCTT 2040
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 TCCTCCTCATGCCTCAGAAAAGCAATTGCTTAGCACCTATGCAATAGGTTTCACTTCTGC 2100
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 CGATTTTATCATTTGGGACCTTGAAAATGAAACAAAGCTGCTTCAAATATCCTGTGGAGG 2160
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 GTGGCGCCGTCCTTATTCATATTATCTTGGCATGGTCCCTGAGTATCAGAATTGTTTTGC 2220
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 CTTTGTTAAGGATCATAACATTCACATTCATAGGCACTGGGCACCATGTCAAGACAAGAA 2280
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 ATTGCTTCCTCAAGTTTTCCATATGCAGTTCCATGGAAGAGAAGTGCACTCTTTGTGCTT 2340
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 CATAGATCCAGCAGGCTATTCAAATCCTGAGAAGAGCTCAAATCTGTATATTGCAACAGG 2400
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 ATGTGAAGATGGAACCATGCGACTTACAGGGAACTCAATTAATAGTGCTGGAAAATGGTG 2460
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 TTCCTCCAAGCTGCTGGGGGAGCATGTTGGTGGACCAGCTGTGAGAGCGACATGCTTCGT 2520
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 GCAGAAGGGCTACACATCGTTAGATAAATCATGTAACATCATCCCCAATGGCAACTCTGA 2580
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 TGACACTTTAGTCAAAAACAAGGATAACATTTCCTTATTAATATCCGTTGGATCAAAGCA 2640
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 AGTCCTGACTACTTGGGTTTTACAGCCTAAGGTTGCAGAAAATAGACATATCTGTTCTAG 2700
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 TGGCTTAGATGTAGACTCCAAGCAAAGCTTGAAAGGTGATTCAGCCATGACATTTCAATG 2760
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 GCTTTCTACCCACATGCCTCCAAAGCTTACCAATAGGTTGAAAACTGGCAATGTAAAAAA 2820
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 TAATAATGAGGAAGGGGATTCCTCTATGATGCAACCCAACCAGTTTATTGTGGATCAGCT 2880
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 GGAAAATGACTGGCGTTATCTTTCGGTTACAGCATTTCTTTTGGAACATCCTTCCACCAA 2940
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 TTCGACAGTGTGTTTTGTTGTTGCTGCTTGCTCTGACGCTACAGTCGTGCTCCGTGCTCT 3000
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 TCTTTTGCCTTCTAGGCTATGGTTTGATGTTGCCTTGTTGGCTCCACAGGGATCACCAGT 3060
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 TCTGGTGCTCAAGCATATTATTGCTGCAGCTAGTGTCAACTGCAAAGACACCGCAGACCA 3120
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 TGGAGATACATACATTGTTGTGAGTGGATCTACAGATGGTAGCATTACTTTCTGGGACCT 3180
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 TACAGATACTATTCATGGATTTATGCAACTAGTATCAGAGACTCAACCACACATGGTTAT 3240
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 TGATTGCCAAAAGCGGCCCAGAACAGGAAGAGGAAGTCAAGGCGGTCGGCGCAGGTGGAG 3300
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 AACACTGCCGGGCCGTTCTTTGAAAAAGATAAATAAAGAGACATCGATCCCTGATGGGAG 3360
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 CATCCCGAATACTCCAAATGCCACTGAAAATACATCTGAAACTTCTAATGTGGAAGAAAC 3420
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 TGATGCCACAAACCAGAACTATGCATTCTCAAATTTGCAATCGTGTAATATACCTGAAGT 3480
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 GACACCAATGCACAGATTCTCCGGTGTTCACCAGTCAGGCGTCAACTGCCTCCATGTCTC 3540
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 AGAGATGAGGGCTTGCTCGTACTCGACACCTGGCATGTCTTACTGTGTCATAAGCGGTGG 3600
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 GGATGATCAAGCTGTTCACTGTTTCAGTTTTACATTAGGATCTCTTCAGGATTGCGCAAT 3660
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 AAATACAAGCCTAGACTCACCTGACAATGGTGCAGTTAAAATTATTTGTCAACATAGGGT 3720
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 TCCTTCTGCCCACAGTTCAGCAGTTAAAGGCATCTGGACGGATGGCATATGGGCTTTCTC 3780
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 TACTGGCCTTGATCAAAGAGTAAGATGTTGGAAGATGGAGTCATCTGGCAAATTCACTGA 3840
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 GTATTCCCATGCTATCATCAGCGTACCTGAGCCAGAAACTTTGGATGTTGTACATGACCG 3900
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 TGCAGAGAGGAAATACTGGGTTGCTGTTGCTGGAAGGGGAATGCAAA-TGGTTGAGTTCT 3959
consensus_6191#1 ---------------------------------GGGGGAACTCCAAAGTGGTTGCGTTCT 27
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 TGTCAGC----AGAAAATG-ACGAGGAAGAAATATCAAAATGACTCTTTTTTTTAGATGA 4014
consensus_6191#1 TGTTCCCCCAAAGAAAGCGCGCGGGGGAGAAAGTTCCAGAAAGCCTTTTTTTTAAGTTGA 87
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 GATGTT--AGTTCATTTGGTGTGAAAC--AGGATGCCCACCAG--AGAACTGGAATTTT- 4067
consensus_6191#1 GATGGTTAGGTTCCTTTGGGCGGTAACCAAGGATGCCCCCCAAGAAGACCGGGGATTGTT 147
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 -ATGTGGACTTCTGCAACTTG-ATCAAAACTTTGAAAT-ATGTC--AGGCAGAACGTACA 4122
consensus_6191#1 AATGGGGACTTTTGCAACTTGGATCAAAACTTTTAAATTATGTCCAAACAAAAACGTACC 207
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 CA-GCATGCC-GACC----AGGTTGGTGCGGGTCT-GCTTGAACAACC-TCATCGCGCT- 4173
consensus_6191#1 CAAGCATGCCCGACCTTTTGGGTTGGTCCGGGTTTTGCTTTAACAACCCTCATTGCCCTT 267
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 GATCGAGCAGTGGATTGTGCGAAGTTTAAGCTGTAGTGCTGTACTGATTTCACTCATGG- 4232
consensus_6191#1 GATCGAGCAGTGGATTGTGCGAAGTTTAAGCCGTAGGGCTGTACTGGTATCACTCATGGG 327
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 TGGACGGTGACAATGGCAAGTGGAACTGTCCGTCTGTCCGTCCAAGTTGATGAGAGCTTG 4292
consensus_6191#1 TGGACGGTGACAATGGCAAGTGGAACTGTCCGTCTGTCCGTCCAAGTTGATGAGAGCTTG 387
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 TCACCTAGTGGATTTTCCTGGCTGGACGAGCAGTGGCGGCGTGTCATGACAACTAGGAAG 4352
consensus_6191#1 TCACCTAGTGGATTTTCCTGGCTGGACGAGCAGGGGCGGCGTGTCATGACAACTAGGAAG 447
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 TATGCAACTAATGACTAACGTGACATGTTTGTTGGTAGGAGTGATTCTGCAATCTCTAAC 4412
consensus_6191#1 TATGCAACTAATGACTAACGTGACATGTTTGTTGGTAGGAGTG-TTCTGCAATCTTTAAC 506
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 CGACCATGAACCCATGATGTTAACTGGTGAAAGATGACCAGATTCAAGAGTGATTCTGTA 4472
consensus_6191#1 CAACCATGAACCCATGATGTTAACTGGTGAAAGATGACCAGATTCAAGAGTGATTCTGTA 566
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 -----GATTCTTGAACCAGCCATGAGGCCGTGATGTTAACTGGTGATAAGTGATCAGATT 4527
consensus_6191#1 ATCTTGATTCTTGAACCAGCCATGAGGCCGTGATGTTAACTGGTGAAAAGTGATCAGATT 626
consensus_6191#2 ------------------GCCATGAGGCCGTGATGTTAACTGGTGATAAGTGATCAGATT 42
**************************** *************
consensus_6191#0 CAAAAACATTATTTTTAGTATTGTAAAGGGCTTTGAGCTTCATCTAAGGTCCCTTTCTTT 4587
consensus_6191#1 CAAAAACATTATTTTTAGTATTGTAAAGGGCTTTGAGCCTT---TGAGCTTCAAAAAAAA 683
consensus_6191#2 CAAAAACATTATTTTTAGTATTGTAAAGGGCTTTGAGCTTCATCTAAGGTCCCTTTCTTT 102
************************************** * * ** * *
consensus_6191#0 CTTTTTGCTGATGCTGTGGCAAACGTTTCTCAATTGTGGTGGCAGATGCTGCACAAGATG 4647
consensus_6191#1 AAAAAA------------------------------------------------------ 689
consensus_6191#2 CTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------ 156
consensus_6191#0 GTGTGCTTTGCTTTGGTCCTTCCTGGTCCATTTATTCCGTCAGTCAGGCTTTCAGACTTC 4707
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 AGAAGTTCAGAGACTTCATTTAAACTGGTGTGCCTCTGTCTAGAATCCTATGTTGACTGG 4767
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 AGTTATATATCTGTCTTGACCGGTCAATGCCCAAATTTTGATTGGTGATGATAAAACTTA 4827
consensus_6191#1 ------------------------------------------------------------
consensus_6191#2 ------------------------------------------------------------
consensus_6191#0 AAACAA 4833
consensus_6191#1 ------
consensus_6191#2 ------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||