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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6192#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1427 fasta sequence
[AGCAGAATCAATGAGAAGATGAAGGCCCTGCAGAGCCTCATTCCCAACTCCAGCAAGACGGACAAAGCCTCCATGCTTGACGATGCCATCGAGTACCTGAAGCAGCTTCAGCTCCAGGTCCAGGTAAGTGTAATGAATGTTGCATTGTTACTGAATTGCTTGAGGATTATTTTCGCAAATCCACAGACTTAATGCTCCAGGTATCGACAATGGATATGTCAAGCGTTTTGAATATTGAGCAGCTGTGTGCTGAAGTGAAATGGTACTAGCATATATGAGTTAGGACAAGCTTGAAGTTCTAGCATCAAAAAGTGTACATTAGCTATCCTAATCACCATTTTCTGATGGCTTACTGTCTAAGCAAGATTTAGTCGGTTAGGACGTCAGAAAAGAACATTGATCTAATCACAGCATGCCACATTGTTGTTTGCACGGCATTTGTAAGAAAAACAAAATGTATGTATTCCACGTTACTGCAGCTAATTTCTGTTTGATTGCTGAATTTTTGTTCCAGATGTTGTCCATGAGGAATGGTCTATATCTGCCCCCAGTGAACTTATCTGGGGCACCTGAGCATCTGCCGATCCCGCAAATGAGTGCTGCACTTGACCAGAATAGTGCCAAAGCATCAGATCCTTCAGTTGTTTTGCAGCCGGTGAACCAGACTTCAGGAGCACTTCTTCCATTTGAGCTGGCAAGCCAACATAAACCTCTATTCTTACCAGGTGTTCCTAATGCAACCGCTCTGGAGCCTCGGTTCCTTGTAGAGTCTTCGCGTTCCAATCTTCAATCCTTACGGTTCACTGAACCCGCTGAGATGATCTATCCTGATGAGATGATGTTAAAGCACCGCCTGACTTCAGCTAGTGAGAGCACAATTGTGCCAGGAACCGATGAGAAGTCGGTTAGGCAGAACACATACATGATGAATGCTGATCGTTTTGATAGATATGCACTCAGCAAAGACCAGTTGCAGCACATTATGCCGAAAAACACAGAAAGTGTACTTGATATGCCACACTTGCAAAGGTTGCAAACCAGTGACACCAAAGTTAGGGTCGAGGGCAGAATCAAAGTAAACCCATGATCTAATTTCCAATTGGACTTGTGGAGTGCAGAGCAGATCAAAATCGGTGACTGGTGATCATGAGCAGCACCTAATCTAGCATTTTACCTCTAGAACAGTAGTTATATCTTGTTGTGCCATTGTACTCTGGTGTGAAGTGCTTTGTAAAGGGAGATCTATCTATAAGCTGCCAGTAACAATGAACATATCCGATGTTAGGAAATAGGAAAATACCATCAAATCAAATCTATATTGCCAATGTAGGCCGGAATTGGGAGATGTGAGATGCCTGTGGCCACTAATTGAGGCTGCATAGTAAGTCTCCACTGTTTTAAAAAAAATCATTTTTCATACTTAAAGA]
[+] EMBL CB674237 [AGCAGAATCAATGAGAAGATGAAGGCCCTGCAGAGCCTCATTCCCAACTCCAGCAAGACGGACAAAGCCTCCATGCTTGACGATGCCATCGAGTACCTGAAGCAGCTTCAGCTCCAGGTCCAGGTAAGTGTAATGAATGTTGCATTGTTACTGAATTGCTTGAGGATTATTTTCGCAAATCCACAGACTTAATGCTCCAGGTATCGACAATGGATATGTCAAGCGTTTTGAATATTGAGCAGCTGTGTGCTGAAGTGAAATGGTACTAGCATATATGAGTTAGGACAAGCTTGAAGTTCTAGCATCAAAAAGTGTACATTAGCTATCCTAATCACCATTTTCTGATGGCTTACTGTCTAAGCAAGATTTAGTCGGTTAGGACGTCAGAAAAGAACATTGATCTAATCACAGCATGCCACATTGTTGTTTGCACGGCATTTGTAAGAAAAACAAAATGTATGTATTCCACGTTACTGCAGCTAATTTCTGTTTGATTGCTGAATTTTTGTTCCAGATGTTGTCCATGAGGAATGGTCTATATCTGCCCCCAGTGAACTTATCTGGGGCACCTGAGCATCTGCCGATCCCGCAAATGAGTGCTGCACTTGACCAGAATAGTGCCAAAGCATCAGATCCTTCAGTTGTTTTGCAGCCGGTGAACCAGACTTCAGGAGCACTTCTTCCATTTGAGCTGGCAAGCCAACATAAACCTCTATTCTTACCAGGTGTTCCTAATGCAACCGCTCTGGAGCCTCGGTTCCTTGTAGAGTCTTCGCGTTCCAATCTTCAATCCTTACGGTTCACTGAACCCGCTGAGATGA ]
[-] EMBL CB674238 [ GCCAAAGCATCAGATCCTTCAGTTGTTTTGCAGCCGGTGAACCAGACTTCAGGAGCACTTCTTCCATTTGAGCTGGCAAGCCAACATAAACCTCTATTCTTACCAGGTGTTCCTAATGCAACCGCTCTGGAGCCTCGGTTCCTTGTAGAGTCTTCGCGTTCCAATCTTCAATCCTTACGGTTCACTGAACCCGCTGAGATGATCTATCCTGATGAGATGATGTTAAAGCACCGCCTGACTTCAGCTAGTGAGAGCACAATTGTGCCAGGAACCGATGAGAAGTCGGTTAGGCAGAACACATACATGATGAATGCTGATCGTTTTGATAGATATGCACTCAGCAAAGACCAGTTGCAGCACATTATGCCGAAAAACACAGAAAGTGTACTTGATATGCCACACTTGCAAAGGTTGCAAACCAGTGACACCAAAGTTAGGGTCGAGGGCAGAATCAAAGTAAACCCATGATCTAATTTCCAATTGGACTTGTGGAGTGCAGAGCAGATCAAAATCGGTGACTGGTGATCATGAGCAGCACCTAATCTAGCATTTTACCTCTAGAACAGTAGTTATATCTTGTTGTGCCATTGTACTCTGGTGTGAAGTGCTTTGTAAAGGGAGATCTATCTATAAGCTGCCAGTAACAATGAACATATCCGATGTTAGGAAATAGGAAAATACCATCAAATCAAATCTATATTGCCAATGTAGGCCGGAATTGGGAGATGTGAGATGCCTGTGGCCACTAATTGAGGCTGCATAGTAAGTCTCCACTGTTTTAAAAAAAATCATTTTTCATACTTAAAGA]
consensusID : consensus_6192#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence
[ACCTCTCCACCTCACCCCGCGACGCGACGCGACGAGCCGTACACCGACCGCCCCGCGCCGCTGCTGCCGGAGCCGGAGAGAGAAGCTGAAGCCGAAGCAGAGGCAGCCGCAGCGGCAAAACTCAAAAGACGTCGTCAAAAGCTCTGCCGCGCTTGCAGCTTTCTCGGGCTCAAGGAAAAGCCATCACAAAACCAGAGACACAGAGAGAGAGAGAGAGAAACTGAAGAAAGGTGGCAACTCCTGCAGCAGCTGCAGCAGCAAGCGCTAGTGTTTGTGGTTTGCTGGTGCTGTGGCGAGGCGATGATGGATGGGCGAGGAAGCCAGGAGGAGGAGCACCTGGATTTGATCATGCGACACCACGCCAGCATGGGGCTGGATCGCTGCGAGAGCGAGGAGGCGCTGGGGTCGTCGGAGTCGGAGCAGCCCACCAGGCCGGCGCGGCCGCGCGGCAAGAGGAGCCGCGCCGCCGAGGTGTACAACCTCTCCGAGAAGAGGAGGAGGAGCAGAATCAATGAGAAGATGAAGGCCCTGCAGAGCCTCATTCCCAACTCCAGCAAGACGGACAAAGCCTCCATGCTTGACGATGCCATCGAGTACCTGAAGCAGCTTCAGCTCCAGGTCCAGATGTTGTCCATGAGGAATGGTCTATATCTGCCCCCAGTGAACTTATCTGGGGCACCTGAGCATCTGCCGAT]
[+] EMBL CB668974 [ACCTCTCCACCTCACCCCGCGACGCGACGCGACGAGCCGTACACCGACCGCCCCGCGCCGCTGCTGCCGGAGCCGGAGAGAGAAGCTGAAGCCGAAGCAGAGGCAGCCGCAGCGGCAAAACTCAAAAGACGTCGTCAAAAGCTCTGCCGCGCTTGCAGCTTTCTCGGGCTCAAGGAAAAGCCATCACAAAACCAGAGACACAGAGAGAGAGAGAGAGAAACTGAAGAAAGGTGGCAACTCCTGCAGCAGCTGCAGCAGCAAGCGCTAGTGTTTGTGGTTTGCTGGTGCTGTGGCGAGGCGATGATGGATGGGCGAGGAAGCCAGGAGGAGGAGCACCTGGATTTGATCATGCGACACCACGCCAGCATGGGGCTGGATCGCTGCGAGAGCGAGGAGGCGCTGGGGTCGTCGGAGTCGGAGCAGCCCACCAGGCCGGCGCGGCCGCGCGGCAAGAGGAGCCGCGCCGCCGAGGTGTACAACCTCTCCGAGAAGAGGAGGAGGAGCAGAATCAATGAGAAGATGAAGGCCCTGCAGAGCCTCATTCCCAACTCCAGCAAGACGGACAAAGCCTCCATGCTTGACGATGCCATCGAGTACCTGAAGCAGCTTCAGCTCCAGGTCCAGATGTTGTCCATGAGGAATGGTCTATATCTGCCCCCAGTGAACTTATCTGGGGCACCTGAGCATCTGCCGAT]
consensusID : consensus_6192#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence
[ATCCTTACGCTTCAATGATCCCGTTGAGATGATCTATCCTGATGAGATGATGTTAAAGCACCCCTTGACTTCAGGTATTGAGAGCACAATTGTGCCAGGAACCGATGAGAAGTCGTTTAGGCAGAACACATACATGACGAATGCTGATTGTTTTGATAGATATGCACTCAGCAAAGACCAGTTGCAGCACATTATGCCGAAAAACACAGAAAGTGTACTTGATATGCCACACTTGCAAAGATTATAAGCTGAGGATTCAGCTTCCAATGTTGGACAGGTTGCAAACCAGTGACACCAAAGTTAGGGTCGAGGGCAGAATCAAAGTAAACCCATGATCTAATTTCCAATTGGACTTGTGGAGTGCAGAGCAGATCAAAATCGGTGAGTGGTGATCATGAGCAGCACCTAATCTAGCATTTTACCTCTAGAACAGTAGTTATATCTTGTTGTGCCATTGTACTCTGGTGTGAAGTGCTTTGTAAAGGGAGATCTATCTATAAGCTGCCAGTAACAATGAACATATCAGATGTTAGGAAATAGGAAAATCCCATCTAATCAAAAAAAGGG]
[-] EMBL CB668975 [ATCCTTACGCTTCAATGATCCCGTTGAGATGATCTATCCTGATGAGATGATGTTAAAGCACCCCTTGACTTCAGGTATTGAGAGCACAATTGTGCCAGGAACCGATGAGAAGTCGTTTAGGCAGAACACATACATGACGAATGCTGATTGTTTTGATAGATATGCACTCAGCAAAGACCAGTTGCAGCACATTATGCCGAAAAACACAGAAAGTGTACTTGATATGCCACACTTGCAAAGATTATAAGCTGAGGATTCAGCTTCCAATGTTGGACAGGTTGCAAACCAGTGACACCAAAGTTAGGGTCGAGGGCAGAATCAAAGTAAACCCATGATCTAATTTCCAATTGGACTTGTGGAGTGCAGAGCAGATCAAAATCGGTGAGTGGTGATCATGAGCAGCACCTAATCTAGCATTTTACCTCTAGAACAGTAGTTATATCTTGTTGTGCCATTGTACTCTGGTGTGAAGTGCTTTGTAAAGGGAGATCTATCTATAAGCTGCCAGTAACAATGAACATATCAGATGTTAGGAAATAGGAAAATCCCATCTAATCAAAAAAAGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6192#0 AGCAGAATCAATGAGAAGATGAAGGCCCTGCAGAGCCTCATTCCCAACTCCAGCAAGACG 60
consensus_6192#2 ------------------------------------------------------------
consensus_6192#1 ------------------------------------------------------------
consensus_6192#0 GACAAAGCCTCCATGCTTGACGATGCCATCGAGTACCTGAAGCAGCTTCAGCTCCAGGTC 120
consensus_6192#2 ------------------------------------------------------------
consensus_6192#1 ------------------------------------------------------------
consensus_6192#0 CAGGTAAGTGTAATGAATGTTGCATTGTTACTGAATTGCTTGAGGATTATTTTCGCAAAT 180
consensus_6192#2 ------------------------------------------------------------
consensus_6192#1 ------------------------------------------------------------
consensus_6192#0 CCACAGACTTAATGCTCCAGGTATCGACAATGGATATGTCAAGCGTTTTGAATATTGAGC 240
consensus_6192#2 ------------------------------------------------------------
consensus_6192#1 ------------------------------------------------------------
consensus_6192#0 AGCTGTGTGCTGAAGTGAAATGGTACTAGCATATATGAGTTAGGACAAGCTTGAAGTTCT 300
consensus_6192#2 ------------------------------------------------------------
consensus_6192#1 ------------------------------------------------------------
consensus_6192#0 AGCATCAAAAAGTGTACATTAGCTATCCTAATCACCATTTTCTGATGGCTTACTGTCTAA 360
consensus_6192#2 ------------------------------------------------------------
consensus_6192#1 ------------------------------------------------------------
consensus_6192#0 GCAAGATTTAGTCGGTTAGGACGTCAGAAAAGAACATTGATCTAATCACAGCATGCCACA 420
consensus_6192#2 ------------------------------------------------------------
consensus_6192#1 ------------------------------------------------------------
consensus_6192#0 TTGTTGTTTGCACGGCATTTGTAAGAAAAACAAAATGTATGTATTCCACGTTACTGCAGC 480
consensus_6192#2 ------------------------------------------------------------
consensus_6192#1 ------------------------------------------------------------
consensus_6192#0 TAATTTCTGTTTGATTGCTGAATTTTTGTTCCAGATGTTGTCCATGAGGAATGGTCTATA 540
consensus_6192#2 ------------------------------------------------------------
consensus_6192#1 ------------------------------------------------------------
consensus_6192#0 TCTGCCCCCAGTGAACTTATCTGGGGCACCTGAGCATCTGCCGATCCCGCAAATGAGTGC 600
consensus_6192#2 ------------------------------------------------------------
consensus_6192#1 ------------------------------------------------------------
consensus_6192#0 TGCACTTGACCAGAATAGTGCCAAAGCATCAGATCCTTCAGTTGTTTTGCAGCCGGTGAA 660
consensus_6192#2 ------------------------------------------------------------
consensus_6192#1 ------------------------------------------------------------
consensus_6192#0 CCAGACTTCAGGAGCACTTCTTCCATTTGAGCTGGCAAGCCAACATAAACCTCTATTCTT 720
consensus_6192#2 ------------------------------------------------------------
consensus_6192#1 ------------------------------------------------------------
consensus_6192#0 ACCAGGTGTTCCTAATGCAACCGCTCTGGAGCCTCGGTTCCTTGTAGAGTCTTCGCGTTC 780
consensus_6192#2 ------------------------------------------------------------
consensus_6192#1 ----------------ACCTCTCCACCTCACCCCGCGACGCGACGCGACGAGCCGTACAC 44
consensus_6192#0 CAATCTTCAATCCTTACGGTTCACTGAACCCGCTGAGATGATCT--ATCCTGATGAGATG 838
consensus_6192#2 ---------ATCCTTACGCTTCAATGATCCCGTTGAGATGATCT--ATCCTGATGAGATG 49
consensus_6192#1 CGACCGCCCCGCGCCGCTGCT-GCCGGAGCCGGAGAGAGAAGCTGAAGCCGAAGCAGAGG 103
* * * * *** **** * ** * ** * *** *
consensus_6192#0 ATGTTAAAGCACCG---CCTGACTTCAGCTAGTGAGAGCACAATTGTGCCAGGAACCGAT 895
consensus_6192#2 ATGTTAAAGCACCC---CTTGACTTCAGGTATTGAGAGCACAATTGTGCCAGGAACCGAT 106
consensus_6192#1 CAGCCGCAGCGGCAAAACTCAAAAGACGTCGTCAAAAGCTCTGCCGCGCTTGCAGCTTTC 163
* *** * * * * * *** * * ** * * *
consensus_6192#0 GAGAAGTCGGTTAGGCAGAACACATACATGATGAATGCTGATCGTTTTGATAGATATGCA 955
consensus_6192#2 GAGAAGTCGTTTAGGCAGAACACATACATGACGAATGCTGATTGTTTTGATAGATATGCA 166
consensus_6192#1 TCGGGCTCA---AGGAAAAGCCATCACAAAACCAGAGACACAGAGAGAGAGAGAGAGAAA 220
* ** *** * * * *** * * * ** *** * *
consensus_6192#0 CTCAGCAAAGAC--CAGTTGCAGCACATTATGCCGAAAAACACAGAAAGTGTACTTGATA 1013
consensus_6192#2 CTCAGCAAAGAC--CAGTTGCAGCACATTATGCCGAAAAACACAGAAAGTGTACTTGATA 224
consensus_6192#1 CTGAAGAAAGGTGGCAACTCCTGCAGCAGCTGCAGCAGCAAGC-GCTAGTGTTTGTGGTT 279
** * **** ** * * *** *** * * * * * ***** ** *
consensus_6192#0 TGCCACACTTGCAAAG-------------------------------------GTTGCAA 1036
consensus_6192#2 TGCCACACTTGCAAAGATTATAAGCTGAGGATTCAGCTTCCAATGTTGGACAGGTTGCAA 284
consensus_6192#1 TGCTGGTGCTGTGGCGA-----------------------------------GGCGATGA 304
*** ** * * *
consensus_6192#0 ACCAGTGACACCAAAGTTAGGGTCGAGGGCAGAATCAAAGTAAACCCATGATCTAATTTC 1096
consensus_6192#2 ACCAGTGACACCAAAGTTAGGGTCGAGGGCAGAATCAAAGTAAACCCATGATCTAATTTC 344
consensus_6192#1 TGGATGGGCGAGGAAGCCAGGAGGAGGAGCACC-TGGATTTGATCATGCGACACCACGCC 363
* * * *** *** * *** * * * * * ** * *
consensus_6192#0 CA-ATTGGACTTGTGGAGTGC-AGAGCAGATCAAAATCGGTGACTGGTGATCATGAGCAG 1154
consensus_6192#2 CA-ATTGGACTTGTGGAGTGC-AGAGCAGATCAAAATCGGTGAGTGGTGATCATGAGCAG 402
consensus_6192#1 AGCATGGGGCTGGATCGCTGCGAGAGCGAGGAGGCGCTGGGGTCGTCGGAGTCGGAGCAG 423
** ** ** * *** ***** ** * ** ******
consensus_6192#0 CAC-CTAATCTAGCATTTTACCTCTAGAACAGTAGTTATATCTTGTTGTGCCATTGTACT 1213
consensus_6192#2 CAC-CTAATCTAGCATTTTACCTCTAGAACAGTAGTTATATCTTGTTGTGCCATTGTACT 461
consensus_6192#1 CCCACCAGGCCGGCGCGGCCGCGCGGCAAGAGGAGCCGCGCC--GCCGAGGTGTACAACC 481
* * * * * ** * * ** ** ** * * * * * **
consensus_6192#0 CTGGTGTGAAGTGCTTTGTAAAGGGAGATCTATCTATAAGCTGCCAGTAACAATGAAC-- 1271
consensus_6192#2 CTGGTGTGAAGTGCTTTGTAAAGGGAGATCTATCTATAAGCTGCCAGTAACAATGAAC-- 519
consensus_6192#1 TCTCCGAGAAGAGG--AGGAGGAGCAGAATCAATGAGAAGATGAAGGCCCTGCAGAGCCT 539
* **** * * * * *** * * *** ** * ** *
consensus_6192#0 -ATATCCGATGTTAGGAAATAGGAAAATACCATCAAATCAAATCTATATTGCCAATGTAG 1330
consensus_6192#2 -ATATCAGATGTTAGGAAATAGGAAAATCCCATCTAATCAAAAAAAGGG----------- 567
consensus_6192#1 CATTCCCAACTCCAGCAAGACGGACAAAGCCTCCATGC----------TTGACGATGCCA 589
** * * ** ** *** ** ** *
consensus_6192#0 GCCGGAATTGGGAGATGTGAGATGCCTGTGGCCACTAATTGAGGCTGCATAGTAAGTCTC 1390
consensus_6192#2 ------------------------------------------------------------
consensus_6192#1 TCGAGTACCTGAAGCAGCTTCAGCTCCAGGTCCAGATGTTGTCCATGAGGAATGGTCTAT 649
consensus_6192#0 CACTGTTTTAAAAAAAATCATTTTTCATACTTAAAGA--------- 1427
consensus_6192#2 ----------------------------------------------
consensus_6192#1 ATCTGCCCCCAGTGAACTTATCTGGGGCACCTGAGCATCTGCCGAT 695
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||