|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6193#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1337 fasta sequence
[TCGCCGCAGATCCCCAAACCTCTCCGCCGCCGCGCCGGCTCGCCTCGCGCGCCATGGCCGCCTCCGCCTCCGCCTCCGCCACCGCCTCCCTCTCCCACCTCCTCCTCGCGCGCGAGCCAGACCCCGCGCCTCTCCCCTCCCGCCGCGCCCCCGCCCTGCTCCCCTTGCCGCGGCGGCGCGGGCAGCGGCCCATCTCCGCCGCCGCCGCCGCCTCCGACCTCCTCTACGCCGCACCCTCCCTCAAGTCCCGGCTCGCCGCCGGGGAGACCCTGTACGGGCTCTTCCTCCTCTCCTTCTCCCCCACGCTCGCCGAGCTCGCCGCCCTCGCCGGCTACGACTACGTCGTCGTCGACATGGAGCACGGCCCCGGCGGCGTTCCCGAGGCGCTGGCCTGCCTCCGCGCCCTCGACGCCGCCCGTACCCCAGCCGTCATCCGCCTCCCCGAGGCCGGCCCCATCTGGGCCAAGAAGGCCCTCGACCTCGGCCCCGCGGGCCTCATGGTCCCCGCCGTCGAGTCCCCCGCCGCCGCGGCCGCCGCCGTGTCGCACTGCCGCTACCCGCCCCGAGGCGTTCGCGGCGCCGCCCACCCCATCGTCCGCGCCTCCGCGTACGGCCTCGACGACTCCTACCTCTCCCGCTGCGAGGACGAGACGCTAATCATCTGCCAGGTCGAGACCGCCGCTGGCATTGCGGAGGTCGACGCCATTGCCGCCGTCGACGGCGTCGACGTCGTCCAGATGGGACCGCTCGACTTGTCAGCCAGCATGGGGTACCTGTGGGACCCAGGGAACAGGAAGGTGCGAGCCAGGCTGAGGGAGGCCGAGAAGAAGGTGTTGGATGCCAGGAAGAAGAATGTGACAGCTTCAGATGGCAATGTCGCATATCTAGGCGGATTCGCCATGCCGAACGACCCGGCAGAGCAGCTCAAGCTGAGGGGTTACCACATGGTGTCTGGTGCAGTGGACATTGGGATGTTCCGGAAGGCGGCGTTGGAGGATGTCAAGCGGTTCAAGGAGGCAGTGATGGAAATCGGCGAGGAGGAAGGCGAGGAGGACGATGAAAAGAAGGACAAGGAAGACGACGGGTACTGGAGTGAGTGAGCACTGAGCAGAGTTGAGCTGAAGATGATCAAGGAACTGTGGTGATGGTGTCTTTTGTTTGTCTTCTGAATTCAGATTGAGAGGTCTAAGTGGTTCCATTTTCCAGGGGCCTC-TGGTGTACTCTTGTTTAGTTGTCAGGTCGATTTTGAGAACATCATGTTTGGGCATCTTAGGATTCCCATTTGTAGGTGGTAACTTCTGAGTACCAATAAAAGCCAGATTTTTATTCTGATGTTA]
[+] EMBL AK121655 [TCGCCGCAGATCCCCAAACCTCTCCGCCGCCGCGCCGGCTCGCCTCGCGCGCCATGGCCGCCTCCGCCTCCGCCTCCGCCACCGCCTCCCTCTCCCACCTCCTCCTCGCGCGCGAGCCAGACCCCGCGCCTCTCCCCTCCCGCCGCGCCCCCGCCCTGCTCCCCTTGCCGCGGCGGCGCGGGCAGCGGCCCATCTCCGCCGCCGCCGCCGCCTCCGACCTCCTCTACGCCGCACCCTCCCTCAAGTCCCGGCTCGCCGCCGGGGAGACCCTGTACGGGCTCTTCCTCCTCTCCTTCTCCCCCACGCTCGCCGAGCTCGCCGCCCTCGCCGGCTACGACTACGTCGTCGTCGACATGGAGCACGGCCCCGGCGGCGTTCCCGAGGCGCTGGCCTGCCTCCGCGCCCTCGACGCCGCCCGTACCCCAGCCGTCATCCGCCTCCCCGAGGCCGGCCCCATCTGGGCCAAGAAGGCCCTCGACCTCGGCCCCGCGGGCCTCATGGTCCCCGCCGTCGAGTCCCCCGCCGCCGCGGCCGCCGCCGTGTCGCACTGCCGCTACCCGCCCCGAGGCGTTCGCGGCGCCGCCCACCCCATCGTCCGCGCCTCCGCGTACGGCCTCGACGACTCCTACCTCTCCCGCTGCGAGGACGAGACGCTAATCATCTGCCAGGTCGAGACCGCCGCTGGCATTGCGGAGGTCGACGCCATTGCCGCCGTCGACGGCGTCGACGTCGTCCAGATGGGACCGCTCGACTTGTCAGCCAGCATGGGGTACCTGTGGGACCCAGGGAACAGGAAGGTGCGAGCCAGGCTGAGGGAGGCCGAGAAGAAGGTGTTGGATGCCAGGAAGAAGAATGTGACAGCTTCAGATGGCAATGTCGCATATCTAGGCGGATTCGCCATGCCGAACGACCCGGCAGAGCAGCTCAAGCTGAGGGGTTACCACATGGTGTCTGGTGCAGTGGACATTGGGATGTTCCGGAAGGCGGCGTTGGAGGATGTCAAGCGGTTCAAGGAGGCAGTGATGGAAATCGGCGAGGAGGAAGGCGAGGAGGACGATGAAAAGAAGGACAAGGAAGACGACGGGTACTGGAGTGAGTGAGCACTGAGCAGAGTTGAGCTGAAGATGATCAAGGAACTGTGGTGATGGTGTCTTTTGTTTGTCTTCTGAATTCAGATTGAGAGGTCTAAGTGGTTCCATTTTCCAGGGGCCTC TGGTGTACTCTTGTTTAGTTGTCAGGTCGATTTTGAGAACATCATGTTTGGGCATCTTAGGATTCCCATTTGTAGGTGGTAACTTCTGAGTACCAATAAAAGCCAGA ]
[+] EMBL C27971 [ AGGTGTTGGATGCCAGGAAGAAGAATGTGACAGCTTCAGATGGCAATGTCGCATATCTAGGCGGATTCG CATGCCGAACGACCCGGCAGAGCAGCTCAAGCTGAGGGGTTACCACATGGTGTCTGGTGCAGTGGACATTGGGATGTTCCGGAA GCGGCGTTGGAGGATGTCAAGCGGTTCAAGGAGGCAGTGATGGAAATCGGCGAGGAGGAAGGCGAGGAGGACGATGAAAAGAAGGACAAGGAAGACGACGGGTACTGGAGTGAGTNAGCACTGAGCAGAGTTGAGCTGAAGATGATCAAGGAACTGTGGTGATGGTGTCTTTTGTTTGTCTTCTGAATTCAGATTGAGAGGTCTAAGTGGTTCCATTTTCCAGGGGCCTCTTGGTGTACTCTTGTTTAGTTGTCAGGTCGATTTTNAGACCATCATGTTT GGCATC ]
[-] EMBL BI305980 [ GTCTAAGTGGTTCCATTTTCCAGGGGCCTC TGGTGTACTCTTGTTTAGTTGTCAGGTCGATTTTGAGAACATCATGTTTGGGCATCTTAGGATTCCCATTTGTAGGTGGTAACTTCTGAGTACCAATAAAAGCCAGATTTTTATTCTGATGTTA]
consensusID : consensus_6193#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 177 fasta sequence
[TGAGAGGTCTAAGTGGTTCCATTTTCCAGGGGCCTCTGGTGTACTCTTGTTTGTTGTCAGGNGATTTTGAGAACATATGTTTGGCACTNGGATTCCATTTATGGTGGAACTCTGACCAATAAAAGCCAGANTCACAGAAAAGGTGANCTNCCGNTTGGTGCGTCTCTCGTTCCGCTG]
[+] EMBL AA751024 [TGAGAGGTCTAAGTGGTTCCATTTTCCAGGGGCCTCTGGTGTACTCTTGTTTGTTGTCAGGNGATTTTGAGAACATATGTTTGGCACTNGGATTCCATTTATGGTGGAACTCTGACCAATAAAAGCCAGANTCACAGAAAAGGTGANCTNCCGNTTGGTGCGTCTCTCGTTCCGCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6193#0 TCGCCGCAGATCCCCAAACCTCTCCGCCGCCGCGCCGGCTCGCCTCGCGCGCCATGGCCG 60
consensus_6193#1 ------------------------------------------------------------
consensus_6193#0 CCTCCGCCTCCGCCTCCGCCACCGCCTCCCTCTCCCACCTCCTCCTCGCGCGCGAGCCAG 120
consensus_6193#1 ------------------------------------------------------------
consensus_6193#0 ACCCCGCGCCTCTCCCCTCCCGCCGCGCCCCCGCCCTGCTCCCCTTGCCGCGGCGGCGCG 180
consensus_6193#1 ------------------------------------------------------------
consensus_6193#0 GGCAGCGGCCCATCTCCGCCGCCGCCGCCGCCTCCGACCTCCTCTACGCCGCACCCTCCC 240
consensus_6193#1 ------------------------------------------------------------
consensus_6193#0 TCAAGTCCCGGCTCGCCGCCGGGGAGACCCTGTACGGGCTCTTCCTCCTCTCCTTCTCCC 300
consensus_6193#1 ------------------------------------------------------------
consensus_6193#0 CCACGCTCGCCGAGCTCGCCGCCCTCGCCGGCTACGACTACGTCGTCGTCGACATGGAGC 360
consensus_6193#1 ------------------------------------------------------------
consensus_6193#0 ACGGCCCCGGCGGCGTTCCCGAGGCGCTGGCCTGCCTCCGCGCCCTCGACGCCGCCCGTA 420
consensus_6193#1 ------------------------------------------------------------
consensus_6193#0 CCCCAGCCGTCATCCGCCTCCCCGAGGCCGGCCCCATCTGGGCCAAGAAGGCCCTCGACC 480
consensus_6193#1 ------------------------------------------------------------
consensus_6193#0 TCGGCCCCGCGGGCCTCATGGTCCCCGCCGTCGAGTCCCCCGCCGCCGCGGCCGCCGCCG 540
consensus_6193#1 ------------------------------------------------------------
consensus_6193#0 TGTCGCACTGCCGCTACCCGCCCCGAGGCGTTCGCGGCGCCGCCCACCCCATCGTCCGCG 600
consensus_6193#1 ------------------------------------------------------------
consensus_6193#0 CCTCCGCGTACGGCCTCGACGACTCCTACCTCTCCCGCTGCGAGGACGAGACGCTAATCA 660
consensus_6193#1 ------------------------------------------------------------
consensus_6193#0 TCTGCCAGGTCGAGACCGCCGCTGGCATTGCGGAGGTCGACGCCATTGCCGCCGTCGACG 720
consensus_6193#1 ------------------------------------------------------------
consensus_6193#0 GCGTCGACGTCGTCCAGATGGGACCGCTCGACTTGTCAGCCAGCATGGGGTACCTGTGGG 780
consensus_6193#1 ------------------------------------------------------------
consensus_6193#0 ACCCAGGGAACAGGAAGGTGCGAGCCAGGCTGAGGGAGGCCGAGAAGAAGGTGTTGGATG 840
consensus_6193#1 ------------------------------------------------------------
consensus_6193#0 CCAGGAAGAAGAATGTGACAGCTTCAGATGGCAATGTCGCATATCTAGGCGGATTCGCCA 900
consensus_6193#1 ------------------------------------------------------------
consensus_6193#0 TGCCGAACGACCCGGCAGAGCAGCTCAAGCTGAGGGGTTACCACATGGTGTCTGGTGCAG 960
consensus_6193#1 ------------------------------------------------------------
consensus_6193#0 TGGACATTGGGATGTTCCGGAAGGCGGCGTTGGAGGATGTCAAGCGGTTCAAGGAGGCAG 1020
consensus_6193#1 ------------------------------------------------------------
consensus_6193#0 TGATGGAAATCGGCGAGGAGGAAGGCGAGGAGGACGATGAAAAGAAGGACAAGGAAGACG 1080
consensus_6193#1 ------------------------------------------------------------
consensus_6193#0 ACGGGTACTGGAGTGAGTGAGCACTGAGCAGAGTTGAGCTGAAGATGATCAAGGAACTGT 1140
consensus_6193#1 ------------------------------------------------------------
consensus_6193#0 GGTGATGGTGTCTTTTGTTTGTCTTCTGAATTCAGATTGAGAGGTCTAAGTGGTTCCATT 1200
consensus_6193#1 -------------------------------------TGAGAGGTCTAAGTGGTTCCATT 23
***********************
consensus_6193#0 TTCCAGGGGCCTCTGGTGTACTCTTGTTTAGTTGTCAGGTCGATTTTGAGAACATCATGT 1260
consensus_6193#1 TTCCAGGGGCCTCTGGTGTACTCTTGTTT-GTTGTCAGGN-GATTTTGAGAACAT-ATGT 80
***************************** ********* ************** ****
consensus_6193#0 TTGGGCATCTTAGGATTCCCATTTGTAGGTGGTAACTTCTGAGTACCAATAAAAGCCAGA 1320
consensus_6193#1 TTGG---CACTNGGATTCC-ATTTAT-GGTGG--AACTCTGA---CCAATAAAAGCCAGA 130
**** * ******* **** * ***** * ***** ***************
consensus_6193#0 TTTTTATTC----TGATGTTA-------------------------- 1337
consensus_6193#1 NTCACAGAAAAGGTGANCTNCCGNTTGGTGCGTCTCTCGTTCCGCTG 177
* * *** *
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||