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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6197#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 915 fasta sequence
[TTCTCTTCGCGAGCTCGCCATTAATACGAGCTTAGCTTTGTTCTCGCGAGGCCTACCTACCTAGTCGTAGCTAGCCACCACCTACTTCTGCTCTTCCAACGCCGCCCATGGCGTCGTCCTCGTCGTCGTCGGGTGGTGGTGGGTCTCTCGCGCTCGCCGCCGCCACCGCCGTCGCGGTGTCCGGCTCCATCGTCATCTTCTCCCTCTGCCGCGCCGCGAGGCNCGCGGCGGGCGGCGGAGGCGGAGGCGGAGGCGGAGGCTTCCCTCCGCCCCTGCCTCTCCTCCTCCTCCTCCTCCTCAGAGAGGCGGAGGCGGAGGAGCGGGAGGCGGGTGCGGTTCGCGGCGGACGTCGTCGACAATGAGGGCGCCGCCCGCCCGGCGCGGCGGCTCGCGGCGGCGGAGGAGCACACGTGCAGGGGCGACGCGGCGGCGGCCGCGGCGGCGGAGCGGATGCCGGCGAACCGGGAGGCGTTGTACCGCGGCATGCTCCGCGACCGCTCCTCCCACAGGGTCACCTACTCCTGCTGACCACCGCCTCCTCGCCGCCGCCTCGCCGCCGGCGGCCGCCGCGGTTGCTCGATTGATTAGGCTCTCGCAATTAAGCTAATTAATCATCATCCTCCGCTTGCTTTTGGTTAACTTTTTTTTTGCTTGTTTTTTCTCTCTCTTTCTCGTGCGTCTTTGCTTCGAAAGACAGGAAGACAGAGGCAGTTGTTGACTTTGTGTGGATCCAGTACATCTCTACTGTACAGTGGATGGATTAGTATATTTTATTTTTA-AGTAGTTTTTGAATCTCCTCTAGGTTTGTAAATACTCGATTTCTTCTCTTTTTTATCTCAAAGAAAAGGGAAAAAAAGAGACGATTTGCCATGTCAAAAGTGGTTGTGAACTCGACGAGAGATTAAAGTCAAAAGT]
[-] EMBL AU076232 [TTCTCTTCGCGAGCTCGCCATTAATACGAGCTTAGCTTTGTTCTCGCGAGGCCTACCTACCTAGTCGTAGCTAGCCACCACCTACTTCTGCTCTTCCAACGCCGCCCATGGCGTCGTCCTCGTCGTCGTCGGGTGGTGGTGGGTCTCTCGCGCTCGCCGCCGCCACCGCCGTCGCGGTGTCCGGCTCCATCGTCATCTTCTCCCTCTGCCGCGCCGCGAGGCNCGCGGCGGGCGGCGGAGGCGGAGGCGGAGGCGG ]
[+] EMBL AK068381 [ CGTCGTCGTCGGGTGGTGGTGGGTCTCTCGCGCTCGCCGCCGCCACCGCCGTCGCGGTGTCCGGCTCCATCGTCATCTTCTCCCTCTGCCGCGCCGCGAGGCCCGCGGC GGCGGCGGAGGCGGAGGCGGAGGCGGAGGCTTCCCTCCGCCCCTGCCTCTCCTCCTCCTCCTCCTCCTCAGAGAGGCGGAGGCGGAGGAGCGGGAGGCGGGTGCGGTTCGCGGCGGACGTCGTCGACAATGAGGGCGCCGCCCGCCCGGCGCGGCGGCTCGCGGCGGCGGAGGAGCACACGTGCAGGGGCGACGCGGCGGCGGCCGCGGCGGCGGAGCGGATGCCGGCGAACCGGGAGGCGTTGTACCGCGGCATGCTCCGCGACCGCTCCTCCCACAGGGTCACCTACTCCTGCTGACCACCGCCTCCTCGCCGCCGCCTCGCCGCCGGCGGCCGCCGCGGTTGCTCGATTGATTAGGCTCTCGCAATTAAGCTAATTAATCATCATCCTCCGCTTGCTTTTGGTTAACTTTTTTTTTGCTTGTTTTTTCTCTCTCTTTCTCGTGCGTCTTTGCTTCGAAAGACAGGAAGACAGAGGCAGTTGTTGACTTTGTGTGGATCCAGTACATCTCTACTGTACAGTGGATGGATTAGTATATTTTATTTTTA AGTAGTTTTTGAATCTCCTCTAGGTTTGTAAATACTCGATTTCTTCTCTTTTTTATCTCAAAGAAAAGGGAAAAAAAGAGACGATTTGCCATGTCAAAAGTGGTTGTGAACTCGACGAGAGATTAAAGTCAAAAGT]
[-] EMBL OSC091 [ TTGATTA GNTCTCGCAATTAAGCTAATTAATCATCATCCTCCGCTTGCTTTTGGTTAACTTTTTTTTTGCTTGTTTTTTCTCTCTCTTTCTCGTGCGTCTTTGCTTCGAAAGACAGGAAGACAGAGGCAGTTGTTGACTTTGTGTGGATCCAGTACATCTCTACTGTACAGTGGATGGATTAGTATATTTTATTTTTANAGTAnaanana ]
consensusID : consensus_6197#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 219 fasta sequence
[GGTGGGTTCGTCACCGGATCCCTTCGATTCGATTCGATTCCTCGACGACGACATGCGTGGATGGATTTCTCACGGTGGTTTGTGTGTGCNGTGCAGNGAGGCGGAGGCGGNGGNGCGGGAGGNGGGTGCGGTTCGCGGCGGACGTCGTCGACAATGAGGGCGCCGCCCGCCCGGCGCGGCGGCTCGCGGCGGCGGAGGNCACACGTGCNGGGGCGACCG]
[-] EMBL AU078051 [GGTGGGTTCGTCACCGGATCCCTTCGATTCGATTCGATTCCTCGACGACGACATGCGTGGATGGATTTCTCACGGTGGTTTGTGTGTGCNGTGCAGNGAGGCGGAGGCGGNGGNGCGGGAGGNGGGTGCGGTTCGCGGCGGACGTCGTCGACAATGAGGGCGCCGCCCGCCCGGCGCGGCGGCTCGCGGCGGCGGAGGNCACACGTGCNGGGGCGACCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6197#0 TTCTCTTCGCGAGCTCGCCATTAATACGAGCTTAGCTTTGTTCTCGCGAGGCCTACCTAC 60
consensus_6197#1 ------------------------------------------------------------
consensus_6197#0 CTAGTCGTAGCTAGCCACCACCTACTTCTGCTCTTCCAACGCCGCCCATGGCGTCGTCCT 120
consensus_6197#1 ------------------------------------------------------------
consensus_6197#0 CGTCGTCGTCGGGTGGTGGTGGGTCTCTCGCGCTCGCCGCCGCCACCGCCGTCGCGGTGT 180
consensus_6197#1 ------------------------------------------------------------
consensus_6197#0 CCGGCTCCATCGTCATCTTCTCCCTCTGCCGCGCCGCGAGGCNCGCGGCGGGCGGCGGAG 240
consensus_6197#1 --GGTGGGTTCGTCACCGGATCCCTTCGATTCGATTCGATTCCT--------CGACGACG 50
** ****** * ***** * ** *** * ** ** *
consensus_6197#0 GCGGAGGCGGAGGCGGAGGCTTCCCTCCGCCCCTGCCTCTCCTCCTCCTCCTCCTCCTCA 300
consensus_6197#1 ACATGCGTGGATG----GATTTCTCACGGTGGTT-----------TGTGTGTGCNGTGCA 95
* * *** * * *** * * * * * * * **
consensus_6197#0 GAGAGGCGGAGGCGGAGGAGCGGGAGGCGGGTGCGGTTCGCGGCGGACGTCGTCGACAAT 360
consensus_6197#1 GNGAGGCGGAGGCGGNGGNGCGGGAGGNGGGTGCGGTTCGCGGCGGACGTCGTCGACAAT 155
* ************* ** ******** ********************************
consensus_6197#0 GAGGGCGCCGCCCGCCCGGCGCGGCGGCTCGCGGCGGCGGAGGAGCACACGTGCAGGGGC 420
consensus_6197#1 GAGGGCGCCGCCCGCCCGGCGCGGCGGCTCGCGGCGGCGGAGGN-CACACGTGCNGGGGC 214
******************************************* ********* *****
consensus_6197#0 GACGCGGCGGCGGCCGCGGCGGCGGAGCGGATGCCGGCGAACCGGGAGGCGTTGTACCGC 480
consensus_6197#1 GAC-CG------------------------------------------------------ 219
*** **
consensus_6197#0 GGCATGCTCCGCGACCGCTCCTCCCACAGGGTCACCTACTCCTGCTGACCACCGCCTCCT 540
consensus_6197#1 ------------------------------------------------------------
consensus_6197#0 CGCCGCCGCCTCGCCGCCGGCGGCCGCCGCGGTTGCTCGATTGATTAGGCTCTCGCAATT 600
consensus_6197#1 ------------------------------------------------------------
consensus_6197#0 AAGCTAATTAATCATCATCCTCCGCTTGCTTTTGGTTAACTTTTTTTTTGCTTGTTTTTT 660
consensus_6197#1 ------------------------------------------------------------
consensus_6197#0 CTCTCTCTTTCTCGTGCGTCTTTGCTTCGAAAGACAGGAAGACAGAGGCAGTTGTTGACT 720
consensus_6197#1 ------------------------------------------------------------
consensus_6197#0 TTGTGTGGATCCAGTACATCTCTACTGTACAGTGGATGGATTAGTATATTTTATTTTTAA 780
consensus_6197#1 ------------------------------------------------------------
consensus_6197#0 GTAGTTTTTGAATCTCCTCTAGGTTTGTAAATACTCGATTTCTTCTCTTTTTTATCTCAA 840
consensus_6197#1 ------------------------------------------------------------
consensus_6197#0 AGAAAAGGGAAAAAAAGAGACGATTTGCCATGTCAAAAGTGGTTGTGAACTCGACGAGAG 900
consensus_6197#1 ------------------------------------------------------------
consensus_6197#0 ATTAAAGTCAAAAGT 915
consensus_6197#1 ---------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||