cluster # 6198

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Oryza sativa
cluster # 6198 cluster # 6198 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6198#0 length = 574 sequences # 3

consensus_6198#1 length = 253 sequences # 1

consensusID : consensus_6198#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 574
fasta sequence

                              [TGTACACCTCGCCGCCACCTCCCTACAGCGGCGGTGGAGGCGGCAGCAGCACCGGCGGTGGAGGCATCTACTACCCCCCGCCCACCGGTGGAGGCGGCGGCGGCGGTGGCGGCTGGCAGCAGGGCGGTGGAGGAGGCGGCGCCTACCCGACACCGCCGCCGCCCAACCCGTTCCTCCCCTACTTCCCATTCTACTACTACAGCCCGCCGCCGCCGTTCTACTCCAGCGGCTCGTCTGTCGCCGGCGTGTCGGCCATTTCGTCGGCGGCGGCGGCGACATTCACGCTGCTCCTCACTGGGCTCCTACTGTGGTGAGAACTGAGAATGGGATAGATCTGCTGAGTTAAACCGATGTTTTTCTTTACA-CTAGGTGGGTAATTTGATTGTGGTTTCTGTAATTTAATTTTTTATTTTTTATTTTTTTTTACTTCTCTCTCTTGGTGATTTATGTATCGATCAGGTATAAGAAAAAATTGCACCCAACTGTAAAACATGGG-CAAGTAATAAG-CA-CCAGTACAGTTGTACTACTACAAATAGATGGATCTGCTGATTAAATTTTTTCGTGCCAAAAAAAA]

[+] EMBL AK102492             [TGTACACCTCGCCGCCACCTCCCTACAGCGGCGGTGGAGGCGGCAGCAGCACCGGCGGTGGAGGCATCTACTACCCCCCGCCCACCGGTGGAGGCGGCGGCGGCGGTGGCGGCTGGCAGCAGGGCGGTGGAGGAGGCGGCGCCTACCCGACACCGCCGCCGCCCAACCCGTTCCTCCCCTACTTCCCATTCTACTACTACAGCCCGCCGCCGCCGTTCTACTCCAGCGGCTCGTCTGTCGCCGGCGTGTCGGCCATTTCGTCGGCGGCGGCGGCGACATTCACGCTGCTCCTCACTGGGCTCCTACTGTGGTGAGAACTGAGAATGGGATAGATCTGCTGAGTTAAACCTATGTCTTTCTTTACA CTAGGTGGGTAATTTGATTGTGGTTTCTGTAATTTAATTTTTTATTTTTTA TTTTTTTTACTTCTCTCTCTTGGTGATTTATGTATCGATCAGGTATAAGAAAAAATTGTACCAAACTGTAAAACATGGG CAAGTAATAAG CA CCAGTACAGTTGTACTACTACAAATAGATGGA                                 ]
[+] EMBL BI804329             [                   TCCCTACA CCGC GTGGA GC GCACAAGCACC GC GTGGAGGCATCTACTACCCCCCGCCCACCGGTGGA GCGGC GC GCCGT GC GCTCGCAGCAGGCCGGTGGAGGA GCGGCGCCTACCCGACACCGCCGCCGCCCAACCCGTTCCTCCCCTACTTCCCATTCTACTACTACAGCCCGCCGCCGCCGTTCTACTCCAGCGGCTCGTCTGTCGCCGGCGTGTCGGCCATTTCGTCGGCGGCGGCGGCGACATTCACGCTGCTCCTCACTGGGCTCCTACTGTGGTGAGAACTGAGAATGGGATAGATCTGCTGAGTTAAACCGATGTTTTTCTTTACA CTAGGTGGGTAATTTGATTGTGGTTTCTGTAATTTAATTTTTTATTTTTTATTTTTTTTTACTTCTCTCTCTTGGTGATTTATGTATCGATCAGGTATAAGAAAAAATTGCACCCAACTGTAAAACATGGG CAAGTAATAAG CACCCAGTACAGTTGTACTACTAC AATAGATGGATCTGCTGATTAAATTTTTTCGTGCCAAAAAAAA]
[+] EMBL BI801482             [                                                                                                                                                                                                                                                      TGTC GCCATTTCGTC GCCGC GCGGCGACATTCACGCTGCTCCTCACTGGGCTCCTACTGTGGTGAGAACTGAGAATGGGATAGATCTGCTGAGTTAAACCGATGTTTTTCTTTACACCTAGGTGGGTAATTTGATTGTGGTTTCTGTAATTTAATTTTTTATTTTTTATTTTTTTTTACTTCTCTCTCTTGGTGATTTATGTATCGATCAGGTATAAGAAAAAATTGCACCCAACTGTAAAACATGGGCCAAGTAATAAGCCC CCAGTACCGTTGTACTACTACCAAaaaaaaaa                                 ]




>consensus_6198#0
TGTACACCTCGCCGCCACCTCCCTACAGCGGCGGTGGAGGCGGCAGCAGCACCGGCGGTG
GAGGCATCTACTACCCCCCGCCCACCGGTGGAGGCGGCGGCGGCGGTGGCGGCTGGCAGC
AGGGCGGTGGAGGAGGCGGCGCCTACCCGACACCGCCGCCGCCCAACCCGTTCCTCCCCT
ACTTCCCATTCTACTACTACAGCCCGCCGCCGCCGTTCTACTCCAGCGGCTCGTCTGTCG
CCGGCGTGTCGGCCATTTCGTCGGCGGCGGCGGCGACATTCACGCTGCTCCTCACTGGGC
TCCTACTGTGGTGAGAACTGAGAATGGGATAGATCTGCTGAGTTAAACCGATGTTTTTCT
TTACACTAGGTGGGTAATTTGATTGTGGTTTCTGTAATTTAATTTTTTATTTTTTATTTT
TTTTTACTTCTCTCTCTTGGTGATTTATGTATCGATCAGGTATAAGAAAAAATTGCACCC
AACTGTAAAACATGGGCAAGTAATAAGCACCAGTACAGTTGTACTACTACAAATAGATGG
ATCTGCTGATTAAATTTTTTCGTGCCAAAAAAAA

consensusID : consensus_6198#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 253
fasta sequence

                              [TGTACGCCTCGCCGCCACCTCCCTACAGCGGCGGTGGAGGCGGCAGCAGCACCGGCGGTGGAGGCATCTACTACCCCCCGCCCACCGGTGAGGGCGGCGGNNGNNGNNGCNGNTGGCANCANGGCGGGGGAGGAGGNGGNNNNNTNNNCCGACCCGNCGNCNGGCCNNCCCCGNNCCNCCCTCCTTTTCCNNTCNCTTNCTCCNGCCCGCCCGCCGGCGTTTTTTCTTCTGCGGTTNGTTTGGTTCCGGGCTT]

[+] EMBL CA758479             [TGTACGCCTCGCCGCCACCTCCCTACAGCGGCGGTGGAGGCGGCAGCAGCACCGGCGGTGGAGGCATCTACTACCCCCCGCCCACCGGTGAGGGCGGCGGNNGNNGNNGCNGNTGGCANCANGGCGGGGGAGGAGGNGGNNNNNTNNNCCGACCCGNCGNCNGGCCNNCCCCGNNCCNCCCTCCTTTTCCNNTCNCTTNCTCCNGCCCGCCCGCCGGCGTTTTTTCTTCTGCGGTTNGTTTGGTTCCGGGCTT]




>consensus_6198#1
TGTACGCCTCGCCGCCACCTCCCTACAGCGGCGGTGGAGGCGGCAGCAGCACCGGCGGTG
GAGGCATCTACTACCCCCCGCCCACCGGTGAGGGCGGCGGNNGNNGNNGCNGNTGGCANC
ANGGCGGGGGAGGAGGNGGNNNNNTNNNCCGACCCGNCGNCNGGCCNNCCCCGNNCCNCC
CTCCTTTTCCNNTCNCTTNCTCCNGCCCGCCCGCCGGCGTTTTTTCTTCTGCGGTTNGTT
TGGTTCCGGGCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6198#0      TGTACACCTCGCCGCCACCTCCCTACAGCGGCGGTGGAGGCGGCAGCAGCACCGGCGGTG 60
consensus_6198#1      TGTACGCCTCGCCGCCACCTCCCTACAGCGGCGGTGGAGGCGGCAGCAGCACCGGCGGTG 60
                      ***** ******************************************************

consensus_6198#0      GAGGCATCTACTACCCCCCGCCCACCGGTGGAGGCGGCGGCGGCGGTGGCGGCTGGCAGC 120
consensus_6198#1      GAGGCATCTACTACCCCCCGCCCACCGGTGAGGGCGGCGGNNGNNGNNGCNGNTGGCANC 120
                      ******************************  ********  *  *  ** * ***** *

consensus_6198#0      AGGGCGGTGGAGGAGGCGGCGCCT--ACCCGACACCGCCGCCGCCCAACCC-GTTCCTCC 177
consensus_6198#1      ANGGCGGGGGAGGAGGNGGNNNNNTNNNCCGACCCGNCGNCNGGCCNNCCCCGNNCCNCC 180
                      * ***** ******** **         ***** *  *  * * **  *** *  ** **

consensus_6198#0      CCTACTTCCCATTCTACTACTACAGCCCGCC-GCCGCCGTTCTA-CTCCAGCGGCTCGTC 235
consensus_6198#1      CTCCTTTTCCNNTCNCTTNCTCCNGCCCGCCCGCCGGCGTTTTTTCTTCTGCGGTTNGTT 240
                      *    ** **  **   * ** * ******* **** **** *  ** * **** * ** 

consensus_6198#0      TGTCGCCGGCGTGTCGGCCATTTCGTCGGCGGCGGCGGCGACATTCACGCTGCTCCTCAC 295
consensus_6198#1      TGGTTCCGGGCTT----------------------------------------------- 253
                      **   ****  *                                                

consensus_6198#0      TGGGCTCCTACTGTGGTGAGAACTGAGAATGGGATAGATCTGCTGAGTTAAACCGATGTT 355
consensus_6198#1      ------------------------------------------------------------
                                                                                  

consensus_6198#0      TTTCTTTACACTAGGTGGGTAATTTGATTGTGGTTTCTGTAATTTAATTTTTTATTTTTT 415
consensus_6198#1      ------------------------------------------------------------
                                                                                  

consensus_6198#0      ATTTTTTTTTACTTCTCTCTCTTGGTGATTTATGTATCGATCAGGTATAAGAAAAAATTG 475
consensus_6198#1      ------------------------------------------------------------
                                                                                  

consensus_6198#0      CACCCAACTGTAAAACATGGGCAAGTAATAAGCACCAGTACAGTTGTACTACTACAAATA 535
consensus_6198#1      ------------------------------------------------------------
                                                                                  

consensus_6198#0      GATGGATCTGCTGATTAAATTTTTTCGTGCCAAAAAAAA 574
consensus_6198#1      ---------------------------------------