These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_62#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1201 fasta sequence [CAGCAAAAGCCCATTATTAACGGGACGCACGCGCGCGCGCGCAGGGGACAAGTCGAGGGAGAGCTAGCTAGCTTAGCTTGCTTGGTTGCTTTGGAGGTGTGGCTTGCCATGGCGAGAGCGTTCCGCGCGGCCTCGCCGCTGCCGCTGCCGTCCTCCAGCTCCAGGGCGGCCGCGGCGAGCGGTGGCACCGGCGGAGGCGGAGGCGGGAACTTCCCGTGGCTGAGCAGGAAGCGGCTGGGCGCCAAGCCGCCGTCGCCGCAGCGGCGAGGTGGACAGGAGAGGGAGGGAGGTGGAGATGAGGCGGCGGGGATGGGGACGACGACGGGCCGCGCGGTTCTCCGCGACGTCGTCCGCGGAGCCTGCTGAGGTGCAGTCGTCGTCGTCGTCGAGGAAGCGCGCGGACGCGCTGGCGAGGCTGCGGGCGGCGTTCCTGGCGGCGATCACGCACCGGCGGCGGCGGCGGCAGCTGGGGTCGAGCCTGACGGGCACCATCTTCGGGCGGCGCCGCGGCCGCGTTCACGTCGCGCTGCAGACGGACACCCGCTCGCCGCCGGTGCTGCTGGTGGAGATGGCCGCCTACTCCACCGGCGCGCTCGTCAGGGAGATGTCCTCCGGCCTCGTCCGCCTCGCGCTCGAGTGCGAGAAGCAACCAATCAACCCAGGCGAGAAGCGGCGGGCGCTGCTGGAGGAGCCGACGTGGCGGGCCTACTGCAACGGCCGAAAGTGCGGCTTCGCGGTGCGCAGGGAGTGCGGCGCCGACGAGTGGAGGGTTCTTGGCGCCGTCGAGCCGGTGTCCGTCGGCGCCGGCGTTCTCCCCGACGACGCCGCCGCCGCCGCCGCCGCCGAGGAGGGCGACCTGATGTACATGCGCGCGAGGTTCGAGCGGGTGGTCGGGTCGAGGGACTCGGAGGCGTTCTACATGATGAACCCTGACGGCAGCGGAGGCCCGGAGCTCAGCATCTACCTGCTCAGAGTCTGACCATGGATCATACTATCATGGAGCAAAATCGAAAAGAAAAAATGAGAGAAGAAATCATCTTGATGTTTGCAATTAATTGTACGTAATCCATCCATCCATGCATGCATAGTTTGGCTTGTGTTAATTACTTTCTTGGGTTTCATGTAATTTGAAGGGTGTCAAGGTGTGTACAGTATTACTGATCACTTGGGGGGGGCTTAATATATCAATCTGGTAAACATT] [+] EMBL AK101923 [CAGCAAAAGCCCATTATTAACGGGACGCACGCGCGCGCGCGCAGGGGACAAGTCGAGGGAGAGCTAGCTAGCTTAGCTTGCTTGGTTGCTTTGGAGGTGTGGCTTGCCATGGCGAGAGCGTTCCGCGCGGCCTCGCCGCTGCCGCTGCCGTCCTCCAGCTCCAGGGCGGCCGCGGCGAGCGGTGGCACCGGCGGAGGCGGAGGCGGGAACTTCCCGTGGCTGAGCAGGAAGCGGCTGGGCGCCAAGCCGCCGTCGCCGCAGCGGCGAGGTGGACAGGAGAGGGAGGGAGGTGGAGATGAGGCGGCGGGGATGGGGACGACGACGGGCCGCGCGGTTCTCCGCGACGTCGTCCGCGGAGCCTGCTGAGGTGCAGTCGTCGTCGTCGTCGAGGAAGCGCGCGGACGCGCTGGCGAGGCTGCGGGCGGCGTTCCTGGCGGCGATCACGCACCGGCGGCGGCGGCGGCAGCTGGGGTCGAGCCTGACGGGCACCATCTTCGGGCGGCGCCGCGGCCGCGTTCACGTCGCGCTGCAGACGGACACCCGCTCGCCGCCGGTGCTGCTGGTGGAGATGGCCGCCTACTCCACCGGCGCGCTCGTCAGGGAGATGTCCTCCGGCCTCGTCCGCCTCGCGCTCGAGTGCGAGAAGCAACCAATCAACCCAGGCGAGAAGCGGCGGGCGCTGCTGGAGGAGCCGACGTGGCGGGCCTACTGCAACGGCCGAAAGTGCGGCTTCGCGGTGCGCAGGGAGTGCGGCGCCGACGAGTGGAGGGTTCTTGGCGCCGTCGAGCCGGTGTCCGTCGGCGCCGGCGTTCTCCCCGACGACGCCGCCGCCGCCGCCGCCGCCGAGGAGGGCGACCTGATGTACATGCGCGCGAGGTTCGAGCGGGTGGTCGGGTCGAGGGACTCGGAGGCGTTCTACATGATGAACCCTGACGGCAGCGGAGGCCCGGAGCTCAGCATCTACCTGCTCAGAGTCTGACCATGGATCATACTATCATGGAGCAAAATCGAAAAGAAAAAATGAGAGAAGAAATCATCTTGATGTTTGCAATTAATTGTACGTAATCCATCCATCCATGCATGCATAGTTTGGCTTGTGTTAATTACTTTCTTGGGTTTCATGTAATTTGAAGGGTGTCAAGGTGTGTACAGTATTACTGATCACTTGGGGGGGGCTTAATATATCAATCTGGTAAACATT] consensusID : consensus_62#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1150 fasta sequence [AGCAAAAGCCCATTATTAACGGGACGCACGCGCGCGCGCGCAGGGGACAAGTCGAGGGAGAGCTAGCTAGTTTAGCTTGCTTGGTTGCTTTGGAGGTGTGGCTTGCCATGGCGAGAGCGTTCCGCGCGGCCTCGCCGCTGCCGCTGCCGTCCTCCAGCTCCAGGGCGGCCGCGGCGAGCGGTGGCACCGGCGGAGGCGGAGGCGGGAACTTCCCGTGGCTGAGCAGGAAGCGGCTGGGCGCCAAGCCGCCGTCGCCGCAGCGGCGAGGTGGACAGGAGAGGGAGGGAGGTGGAGATGAGGCGGCGGGGATGGGGACGACGACGAGGGCCGCGCGGTTCTCCGCGACGTCGTCCGCGGAGCCTGCTGAGGTGCAGTCGTCGTCGTCGTCGAGGAAGCGCGCGGACGCGCTGGCGAGGCTGCGGGCGGCGTTCCTGGCGGAGATGGCCGCCTACTCCACCGGCGCGCTCGTCAGGGAGATGTCCTCCGGCCTCGTCCGCCTCGCGCTCGAGTGCGAGAAGCAACCAATCAACCCAGGCGAGAAGCGGCGGGCGCTGCTGGAGGAGCCGACGTGGCGGGCCTACTGCAACGGCCGAAAGTGCGGCTTCGCGGTGCGCAGGGAGTGCGGCGCCGACGAGTGGAGGGTTCTTGGCGCCGTCGAGCCGGTGTCCGTCGGCGCCGGCGTTCTCCCCGACGACGCCGCCGCCGCCGCCGCCGCCGAGGAGGGCGACCTGATGTACATGCGCGCGAGGTTCGAGCGGGTGGTCGGGTCGAGGGACTCGGAGGCGTTCTACATGATGAACCCTGACGGCAGCGGCGGCCCGGAGCTCAGCATCTACCTGCTCAGAGTCTGACCATGGATCATACTATCATGGAGCAAAATCGAAAAGAAAAAATGAGAGAAGAAATCATCTTGATGTTTGCAATTAATTGTACGTAATCCATCCATCCATGCATGCATAGTTTGGCTTGTGTTAATTACTTTCTTGGGTTTCATGTAATTTGAAGGGTGTCAAGGTGTGTACAGTATTACTGATCACTTGGGGGGGGCTTAATATATCAATCTGGTAAACATTGGTGTGATGCACTGATGCTGCTGTACTATCTGTTTGTGAGACATTTCACGTCTGTGTGCTTCAGGACTAATTCATAA] [+] EMBL AK063563 [AGCAAAAGCCCATTATTAACGGGACGCACGCGCGCGCGCGCAGGGGACAAGTCGAGGGAGAGCTAGCTAGTTTAGCTTGCTTGGTTGCTTTGGAGGTGTGGCTTGCCATGGCGAGAGCGTTCCGCGCGGCCTCGCCGCTGCCGCTGCCGTCCTCCAGCTCCAGGGCGGCCGCGGCGAGCGGTGGCACCGGCGGAGGCGGAGGCGGGAACTTCCCGTGGCTGAGCAGGAAGCGGCTGGGCGCCAAGCCGCCGTCGCCGCAGCGGCGAGGTGGACAGGAGAGGGAGGGAGGTGGAGATGAGGCGGCGGGGATGGGGACGACGACGAGGGCCGCGCGGTTCTCCGCGACGTCGTCCGCGGAGCCTGCTGAGGTGCAGTCGTCGTCGTCGTCGAGGAAGCGCGCGGACGCGCTGGCGAGGCTGCGGGCGGCGTTCCTGGCGGAGATGGCCGCCTACTCCACCGGCGCGCTCGTCAGGGAGATGTCCTCCGGCCTCGTCCGCCTCGCGCTCGAGTGCGAGAAGCAACCAATCAACCCAGGCGAGAAGCGGCGGGCGCTGCTGGAGGAGCCGACGTGGCGGGCCTACTGCAACGGCCGAAAGTGCGGCTTCGCGGTGCGCAGGGAGTGCGGCGCCGACGAGTGGAGGGTTCTTGGCGCCGTCGAGCCGGTGTCCGTCGGCGCCGGCGTTCTCCCCGACGACGCCGCCGCCGCCGCCGCCGCCGAGGAGGGCGACCTGATGTACATGCGCGCGAGGTTCGAGCGGGTGGTCGGGTCGAGGGACTCGGAGGCGTTCTACATGATGAACCCTGACGGCAGCGGCGGCCCGGAGCTCAGCATCTACCTGCTCAGAGTCTGACCATGGATCATACTATCATGGAGCAAAATCGAAAAGAAAAAATGAGAGAAGAAATCATCTTGATGTTTGCAATTAATTGTACGTAATCCATCCATCCATGCATGCATAGTTTGGCTTGTGTTAATTACTTTCTTGGGTTTCATGTAATTTGAAGGGTGTCAAGGTGTGTACAGTATTACTGATCACTTGGGGGGGGCTTAATATATCAATCTGGTAAACATTGGTGTGATGCACTGATGCTGCTGTACTATCTGTTTGTGAGACATTTCACGTCTGTGTGCTTCAGGACTAATTCATAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_62#0 CAGCAAAAGCCCATTATTAACGGGACGCACGCGCGCGCGCGCAGGGGACAAGTCGAGGGA 60 consensus_62#1 -AGCAAAAGCCCATTATTAACGGGACGCACGCGCGCGCGCGCAGGGGACAAGTCGAGGGA 59 *********************************************************** consensus_62#0 GAGCTAGCTAGCTTAGCTTGCTTGGTTGCTTTGGAGGTGTGGCTTGCCATGGCGAGAGCG 120 consensus_62#1 GAGCTAGCTAGTTTAGCTTGCTTGGTTGCTTTGGAGGTGTGGCTTGCCATGGCGAGAGCG 119 *********** ************************************************ consensus_62#0 TTCCGCGCGGCCTCGCCGCTGCCGCTGCCGTCCTCCAGCTCCAGGGCGGCCGCGGCGAGC 180 consensus_62#1 TTCCGCGCGGCCTCGCCGCTGCCGCTGCCGTCCTCCAGCTCCAGGGCGGCCGCGGCGAGC 179 ************************************************************ consensus_62#0 GGTGGCACCGGCGGAGGCGGAGGCGGGAACTTCCCGTGGCTGAGCAGGAAGCGGCTGGGC 240 consensus_62#1 GGTGGCACCGGCGGAGGCGGAGGCGGGAACTTCCCGTGGCTGAGCAGGAAGCGGCTGGGC 239 ************************************************************ consensus_62#0 GCCAAGCCGCCGTCGCCGCAGCGGCGAGGTGGACAGGAGAGGGAGGGAGGTGGAGATGAG 300 consensus_62#1 GCCAAGCCGCCGTCGCCGCAGCGGCGAGGTGGACAGGAGAGGGAGGGAGGTGGAGATGAG 299 ************************************************************ consensus_62#0 GCGGCGGGGATGGGGACGACGACG--GGCCGCGCGGTTCTCCGCGACGTCGTCCGCGGAG 358 consensus_62#1 GCGGCGGGGATGGGGACGACGACGAGGGCCGCGCGGTTCTCCGCGACGTCGTCCGCGGAG 359 ************************ ********************************** consensus_62#0 CCTGCTGAGGTGCAGTCGTCGTCGTCGTCGAGGAAGCGCGCGGACGCGCTGGCGAGGCTG 418 consensus_62#1 CCTGCTGAGGTGCAGTCGTCGTCGTCGTCGAGGAAGCGCGCGGACGCGCTGGCGAGGCTG 419 ************************************************************ consensus_62#0 CGGGCGGCGTTCCTGGCGGCGATCACGCACCGGCGGCGGCGGCGGCAGCTGGGGTCGAGC 478 consensus_62#1 CGGGCGGCGTTCCTGGCGG----------------------------------------- 438 ******************* consensus_62#0 CTGACGGGCACCATCTTCGGGCGGCGCCGCGGCCGCGTTCACGTCGCGCTGCAGACGGAC 538 consensus_62#1 ------------------------------------------------------------ consensus_62#0 ACCCGCTCGCCGCCGGTGCTGCTGGTGGAGATGGCCGCCTACTCCACCGGCGCGCTCGTC 598 consensus_62#1 ----------------------------AGATGGCCGCCTACTCCACCGGCGCGCTCGTC 470 ******************************** consensus_62#0 AGGGAGATGTCCTCCGGCCTCGTCCGCCTCGCGCTCGAGTGCGAGAAGCAACCAATCAAC 658 consensus_62#1 AGGGAGATGTCCTCCGGCCTCGTCCGCCTCGCGCTCGAGTGCGAGAAGCAACCAATCAAC 530 ************************************************************ consensus_62#0 CCAGGCGAGAAGCGGCGGGCGCTGCTGGAGGAGCCGACGTGGCGGGCCTACTGCAACGGC 718 consensus_62#1 CCAGGCGAGAAGCGGCGGGCGCTGCTGGAGGAGCCGACGTGGCGGGCCTACTGCAACGGC 590 ************************************************************ consensus_62#0 CGAAAGTGCGGCTTCGCGGTGCGCAGGGAGTGCGGCGCCGACGAGTGGAGGGTTCTTGGC 778 consensus_62#1 CGAAAGTGCGGCTTCGCGGTGCGCAGGGAGTGCGGCGCCGACGAGTGGAGGGTTCTTGGC 650 ************************************************************ consensus_62#0 GCCGTCGAGCCGGTGTCCGTCGGCGCCGGCGTTCTCCCCGACGACGCCGCCGCCGCCGCC 838 consensus_62#1 GCCGTCGAGCCGGTGTCCGTCGGCGCCGGCGTTCTCCCCGACGACGCCGCCGCCGCCGCC 710 ************************************************************ consensus_62#0 GCCGCCGAGGAGGGCGACCTGATGTACATGCGCGCGAGGTTCGAGCGGGTGGTCGGGTCG 898 consensus_62#1 GCCGCCGAGGAGGGCGACCTGATGTACATGCGCGCGAGGTTCGAGCGGGTGGTCGGGTCG 770 ************************************************************ consensus_62#0 AGGGACTCGGAGGCGTTCTACATGATGAACCCTGACGGCAGCGGAGGCCCGGAGCTCAGC 958 consensus_62#1 AGGGACTCGGAGGCGTTCTACATGATGAACCCTGACGGCAGCGGCGGCCCGGAGCTCAGC 830 ******************************************** *************** consensus_62#0 ATCTACCTGCTCAGAGTCTGACCATGGATCATACTATCATGGAGCAAAATCGAAAAGAAA 1018 consensus_62#1 ATCTACCTGCTCAGAGTCTGACCATGGATCATACTATCATGGAGCAAAATCGAAAAGAAA 890 ************************************************************ consensus_62#0 AAATGAGAGAAGAAATCATCTTGATGTTTGCAATTAATTGTACGTAATCCATCCATCCAT 1078 consensus_62#1 AAATGAGAGAAGAAATCATCTTGATGTTTGCAATTAATTGTACGTAATCCATCCATCCAT 950 ************************************************************ consensus_62#0 GCATGCATAGTTTGGCTTGTGTTAATTACTTTCTTGGGTTTCATGTAATTTGAAGGGTGT 1138 consensus_62#1 GCATGCATAGTTTGGCTTGTGTTAATTACTTTCTTGGGTTTCATGTAATTTGAAGGGTGT 1010 ************************************************************ consensus_62#0 CAAGGTGTGTACAGTATTACTGATCACTTGGGGGGGGCTTAATATATCAATCTGGTAAAC 1198 consensus_62#1 CAAGGTGTGTACAGTATTACTGATCACTTGGGGGGGGCTTAATATATCAATCTGGTAAAC 1070 ************************************************************ consensus_62#0 ATT--------------------------------------------------------- 1201 consensus_62#1 ATTGGTGTGATGCACTGATGCTGCTGTACTATCTGTTTGTGAGACATTTCACGTCTGTGT 1130 *** consensus_62#0 -------------------- consensus_62#1 GCTTCAGGACTAATTCATAA 1150 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||