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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6206#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1488 fasta sequence
[GTGGACTACTGGAGGGAGAGAGAGGGTGAGCGAGGGGATCTTCACTCCTCCAGTTCCTCCCCATTTCTTGCATCCCTTCCGGATCTATCAGCCCCGTCACCAACCTTCTTCCATCCACGCTTCCATCTAAAGATCGGAGCAGGATGATGGGCGATTTCCTCTCCAGGGTCCTACTGTTGGCCTTTGGTTATGCTTATCCTGCTTATGAATGCTATAAAACCGTAGAGCTGAACAAGCCCGAGATTGAGAAGCTTATTTTCTGGTGTCAATATTGGATATTAGTCGCGCTGCTGACGGTTTTGGAACGATTTGGTGATTTTGCAATATCATGGCTACCACTGTACTCAGAAGCAAAGCTGATGTTCTTTATATACTTATGGTGCCCAAGGACAAAGGGAACCTCCTATGTCTATGAGACTTTCTTTAGGCCATACATTTCACAATATGAGAATGATATCGACTGCAGTATTCTTGATTTGAGAGTAAGAGCTGGGGACATGCTTGTGGTTTACTGGCAGAAGGTTGCAATTATTGGCCAGACTACATTCTTTAACATTTTGAAGTATGCTTCTGCACAGTCACCAGCTCATTCATCAAGGTCGCGCTCAGCACAGCAGCAATCGTATCCACAAAAACAGCAGCAAGCACAACCCCAACAACCGAAGCAATCACTGCCCCAACAGCAACAGAAGCAATCACTGCCCCAACAGCAACAGCAGCAGATGCCCCATGAAAAACCAACAACGCTTCGCAGAGCAGCATCTGCTGCCGCTCGAACAGCTGGAATTATGCAGCAGTCGGAGGACACGAAGATTGCTTACTCTAACCCCAAGACCAGGCGTCTACTACCCACAAAGTCTGCTCCGACGGCTTCCACAAGGTCCACGGTTGCAGCAACGAAACCGGTCGAGGATCTTAAGAGCAGTGGAATGAAGCTTGCAACTGAGGAAGCACCATCTCCATCCAGTAATGCTGCCATGCCAGGCTCTGAGCCTAGTGCGCCGCCACTCCCGAAATCTGCAGAAGATGACATGTCTATCGATGAGGTTGACATTCCTATAGAGGACATGGATGAGCCTGTTGCCACTCCAGAGGAGACACCAATGGAGGAGGCGATTCGAGTGACCCGTGGGAGGCTAAGGAAACGTATTGCCGCAGTTTCCACTGCTGATGGCGGTGCAGCAAATTAACTGCATGCCATTTGTCATCTATTTCCACAAAATATGTGCTTCAGAGCTTTAGGGCGATCACCTGTTTGGTTGCAGCAGATATCTCTGTTTCCACATTATGTTCTTCGAGCTTTAGGGTGATCTGCTGTTTGGTTGCAGGCAGCAGATGTCTTGGTTGGTTTAATTTATTGCTTTGAACCTGCTTCCTTAAGTAGTGTTTCTTCCACCTGTTTTGCTAATTTGCTAATATTCCTAGACCTAGAAGATGTAAATATTGCAGGGCATCTGTATATATGTTGGGCAAGCGAATCCTTATTTG]
[+] EMBL AK121849 [GTGGACTACTGGAGGGAGAGAGAGGGTGAGCGAGGGGATCTTCACTCCTCCAGTTCCTCCCCATTTCTTGCATCCCTTCCGGATCTATCAGCCCCGTCACCAACCTTCTTCCATCCACGCTTCCATCTAAAGATCGGAGCAGGATGATGGGCGATTTCCTCTCCAGGGTCCTACTGTTGGCCTTTGGTTATGCTTATCCTGCTTATGAATGCTATAAAACCGTAGAGCTGAACAAGCCCGAGATTGAGAAGCTTATTTTCTGGTGTCAATATTGGATATTAGTCGCGCTGCTGACGGTTTTGGAACGATTTGGTGATTTTGCAATATCATGGCTACCACTGTACTCAGAAGCAAAGCTGATGTTCTTTATATACTTATGGTGCCCAAGGACAAAGGGAACCTCCTATGTCTATGAGACTTTCTTTAGGCCATACATTTCACAATATGAGAATGATATCGACTGCAGTATTCTTGATTTGAGAGTAAGAGCTGGGGACATGCTTGTGGTTTACTGGCAGAAGGTTGCAATTATTGGCCAGACTACATTCTTTAACATTTTGAAGTATGCTTCTGCACAGTCACCAGCTCATTCATCAAGGTCGCGCTCAGCACAGCAGCAATCGTATCCACAAAAACAGCAGCAAGCACAACCCCAACAACCGAAGCAATCACTGCCCCAACAGCAACAGAAGCAATCACTGCCCCAACAGCAACAGCAGCAGATGCCCCATGAAAAACCAACAACGCTTCGCAGAGCAGCATCTGCTGCCGCTCGAACAGCTGGAATTATGCAGCAGTCGGAGGACACGAAGATTGCTTACTCTAACCCCAAGACCAGGCGTCTACTACCCACAAAGTCTGCTCCGACGGCTTCCACAAGGTCCACGGTTGCAGCAACGAAACCGGTCGAGGATCTTAAGAGCAGTGGAATGAAGCTTGCAACTGAGGAAGCACCATCTCCATCCAGTAATGCTGCCATGCCAGGCTCTGAGCCTAGTGCGCCGCCACTCCCGAAATCTGCAGAAGATGACATGTCTATCGATGAGGTTGACATTCCTATAGAGGACATGGATGAGCCTGTTGCCACTCCAGAGGAGACACCAATGGAGGAGGCGATTCGAGTGACCCGTGGGAGGCTAAGGAAACGTATTGCCGCAGTTTCCACTGCTGATGGCGGTGCAGCAAATTAACTGCATGCCATTTGTCATCTATTTCCACAAAATATGTGCTTCAGAGCTTTAGGGCGATCACCTGTTTGGTTGCAGCAGATATCTCTGTTTCCACATTATGTTCTTCGAGCTTTAGGGTGATCTGCTGTTTGGTTGCAGGCAGCAGATGTCTTGGTTGGTTTAATTTATTGCTTTGAACCTGCTTCCTTAAGTAGTGTTTCTTCCACCTGTTTTGCTAATTTGCTAATATTCCTAGACCTAGAAGATGTAAATATTGCAGGGCATCTGTATATATGTTGGGCAAGCGAATCCTTATTTG]
[+] EMBL AA749718 [ gtCTGCAGTATTCTTGATTTGAGAGTAAGAGCTGGGGACATGCTTGTGGTTTACTGGCAGAAGGTTGCAATTATTGGCCAGACTACATTCTTTAACATTTTGAAGTATGCTTCTGCACAGTCACCAGCTCATTCATCAAGGTCGCGCTCAACACAGCAGCAATCGTATCCACAAAAACAGCAGCAAGCACAACCCCAACAACCGAAGCAATCACTGCCCCAACA ]
[-] EMBL AU197192 [ CCCGAAATCTGCAGAAGATGACATGTCTANCGATGAGGTTGACATTCCTATAGAGGACATGGATGAGCCTGTTGCCACTCCAGAGGAGACACCAATGGANNAGGCGATTCGAGTGACCCGTGGGAGGCTAANGAAACGTATTGCCGCAGTTTCCACTGCTGATGGCGGTGCAGCAAATTAACTGCATGCCATTTGTCATCTATTTCCACAAAATATGTGCTTCAGAGCTTTAGGGCGATCACCTGTTTGGTTGCAGCAGATATCTCTGTTTCCACATTATGTTCTTCGAGCTTTANGGTGATCTGCTGTTTGGTTGCAGGCAGCAGATGTCTTGGTTGGTTTAATTTATTGCTTTGAACCTGCTTCCTTAAaaaaaaa ]
consensusID : consensus_6206#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1474 fasta sequence
[GTGTTGCCCGTTGGGTTTGGTGGAGTTTGAAGAGCTCTGTCGCCGTCTTCACTCCTCGCAGTCAGACGGGAGTGGACTACTGGAGGGAGAGAGAGGGTGAGCGAGGGGATCTTCACTCCTCCAGTTCCTCCCCATTTCTTGCATCCCTTCCGGATCTATCAGCCCCGTCACCAACCTTCTTCCATCCACGCTTCCATCTATCGGAGCAGGATGATGGGCGATTTCCTCTCCAGGGTCCTACTGTTGGCCTTTGGTTATGCTTATCCTGCTTATGAATGCTATAAAACCGTAGAGCTGAACAAGCCCGAGATTGAGAAGCTTATTTTCTGGTGTCAATATTGGATATTAGTCGCGCTACTGACGGTTTTGGAACGATTTGGTGATCTTGCAATATCATGGCTACCACTGTACTCAGAAGCAAAGCTGATGTTCTTTATATACTTATGGTGCCCAAGGACAAAGGGAACCTCCTATGTCTATGAGACTTTCTTTAGGCCATACATTTCACAGTATGAGAATGATATCGACTGCAGTATTCTTGATTTGAGAGTAAGAGCTGGGGACATGCTTGTGGTTTACTGGCAGAAGGTTGCAATTATTGGCCAGACTACATTCTTTAACATTTTGAAGTATGCTTCTGCACAGTCACCAGCTCATTCATCAAGGTCGCGCTCAACACAGGTTTGCAAGCAGAATGTTTTATCTTCTAGTTTGTTGAATGATAATGGAACAGCATTCATCAATCAATGCCTTTTGAACACTCCTACGTTTGGTTCACAATTCATATTTATGCACAATCTCTTTTGCCTGCTAATACCTGAGTTGCAGGTGTCCTGCTATCATAGTTTCGTAGATAAGTGTCATGCCGTAGTACTCCAAACTTTCTGTGCAACTACTCCAACTTTGTGTTAAGTTCCATGAGAAATAGAAGTTTACATTGTTATTGTGGTTGTTTGTTTGAGATGATTGTAATACTCGAAAATAGAATGAACCAAAGATGTTCCATAATAACTTGCTTCAATCCTAAACTCTTAGCAAGATAATGTCACGAAAGACGATATTTAACAGCACCTTCAACTATGTTTGCGATAAAGGCATTAAATTAACAAAAGTCAAAACTAATCAAATTAAAGCAAGATAATGTCACGAAAGACAATATTTAGCAGTTCCTTCAACTATGTTTGGGATAAAGGCATTGAATTAACAAAAGTCAAAACTAATCAAATTAAAGCGAGACAATATTTAAATTGCTCTGTATATTTGTACAAACATTATGTAATAGAAAAAAACATCCACGTGTGGTATCTAATAGCAAGACGTTTAAGGTGCCGTATGAGGTTATAGTGACCCGTTACAAGGTGCATAGGGTTGTAGAAAGAATGACCAGCCTTCAGTTCCACAAGGTTGGCAGCCATCCATTGCATCACTAAAAGAACATAGTGGGGGTCACAACAGCCACCAAGACAAAGCAGCA]
[+] EMBL AK064459 [GTGTTGCCCGTTGGGTTTGGTGGAGTTTGAAGAGCTCTGTCGCCGTCTTCACTCCTCGCAGTCAGACGGGAGTGGACTACTGGAGGGAGAGAGAGGGTGAGCGAGGGGATCTTCACTCCTCCAGTTCCTCCCCATTTCTTGCATCCCTTCCGGATCTATCAGCCCCGTCACCAACCTTCTTCCATCCACGCTTCCATCTATCGGAGCAGGATGATGGGCGATTTCCTCTCCAGGGTCCTACTGTTGGCCTTTGGTTATGCTTATCCTGCTTATGAATGCTATAAAACCGTAGAGCTGAACAAGCCCGAGATTGAGAAGCTTATTTTCTGGTGTCAATATTGGATATTAGTCGCGCTACTGACGGTTTTGGAACGATTTGGTGATCTTGCAATATCATGGCTACCACTGTACTCAGAAGCAAAGCTGATGTTCTTTATATACTTATGGTGCCCAAGGACAAAGGGAACCTCCTATGTCTATGAGACTTTCTTTAGGCCATACATTTCACAGTATGAGAATGATATCGACTGCAGTATTCTTGATTTGAGAGTAAGAGCTGGGGACATGCTTGTGGTTTACTGGCAGAAGGTTGCAATTATTGGCCAGACTACATTCTTTAACATTTTGAAGTATGCTTCTGCACAGTCACCAGCTCATTCATCAAGGTCGCGCTCAACACAGGTTTGCAAGCAGAATGTTTTATCTTCTAGTTTGTTGAATGATAATGGAACAGCATTCATCAATCAATGCCTTTTGAACACTCCTACGTTTGGTTCACAATTCATATTTATGCACAATCTCTTTTGCCTGCTAATACCTGAGTTGCAGGTGTCCTGCTATCATAGTTTCGTAGATAAGTGTCATGCCGTAGTACTCCAAACTTTCTGTGCAACTACTCCAACTTTGTGTTAAGTTCCATGAGAAATAGAAGTTTACATTGTTATTGTGGTTGTTTGTTTGAGATGATTGTAATACTCGAAAATAGAATGAACCAAAGATGTTCCATAATAACTTGCTTCAATCCTAAACTCTTAGCAAGATAATGTCACGAAAGACGATATTTAACAGCACCTTCAACTATGTTTGCGATAAAGGCATTAAATTAACAAAAGTCAAAACTAATCAAATTAAAGCAAGATAATGTCACGAAAGACAATATTTAGCAGTTCCTTCAACTATGTTTGGGATAAAGGCATTGAATTAACAAAAGTCAAAACTAATCAAATTAAAGCGAGACAATATTTAAATTGCTCTGTATATTTGTACAAACATTATGTAATAGAAAAAAACATCCACGTGTGGTATCTAATAGCAAGACGTTTAAGGTGCCGTATGAGGTTATAGTGACCCGTTACAAGGTGCATAGGGTTGTAGAAAGAATGACCAGCCTTCAGTTCCACAAGGTTGGCAGCCATCCATTGCATCACTAAAAGAACATAGTGGGGGTCACAACAGCCACCAAGACAAAGCAGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6206#0 ------------------------------------------------------------
consensus_6206#1 GTGTTGCCCGTTGGGTTTGGTGGAGTTTGAAGAGCTCTGTCGCCGTCTTCACTCCTCGCA 60
consensus_6206#0 -----------GTGGACTACTGGAGGGAGAGAGAGGGTGAGCGAGGGGATCTTCACTCCT 49
consensus_6206#1 GTCAGACGGGAGTGGACTACTGGAGGGAGAGAGAGGGTGAGCGAGGGGATCTTCACTCCT 120
*************************************************
consensus_6206#0 CCAGTTCCTCCCCATTTCTTGCATCCCTTCCGGATCTATCAGCCCCGTCACCAACCTTCT 109
consensus_6206#1 CCAGTTCCTCCCCATTTCTTGCATCCCTTCCGGATCTATCAGCCCCGTCACCAACCTTCT 180
************************************************************
consensus_6206#0 TCCATCCACGCTTCCATCTAAAGATCGGAGCAGGATGATGGGCGATTTCCTCTCCAGGGT 169
consensus_6206#1 TCCATCCACGCTTCCATCTA----TCGGAGCAGGATGATGGGCGATTTCCTCTCCAGGGT 236
******************** ************************************
consensus_6206#0 CCTACTGTTGGCCTTTGGTTATGCTTATCCTGCTTATGAATGCTATAAAACCGTAGAGCT 229
consensus_6206#1 CCTACTGTTGGCCTTTGGTTATGCTTATCCTGCTTATGAATGCTATAAAACCGTAGAGCT 296
************************************************************
consensus_6206#0 GAACAAGCCCGAGATTGAGAAGCTTATTTTCTGGTGTCAATATTGGATATTAGTCGCGCT 289
consensus_6206#1 GAACAAGCCCGAGATTGAGAAGCTTATTTTCTGGTGTCAATATTGGATATTAGTCGCGCT 356
************************************************************
consensus_6206#0 GCTGACGGTTTTGGAACGATTTGGTGATTTTGCAATATCATGGCTACCACTGTACTCAGA 349
consensus_6206#1 ACTGACGGTTTTGGAACGATTTGGTGATCTTGCAATATCATGGCTACCACTGTACTCAGA 416
*************************** *******************************
consensus_6206#0 AGCAAAGCTGATGTTCTTTATATACTTATGGTGCCCAAGGACAAAGGGAACCTCCTATGT 409
consensus_6206#1 AGCAAAGCTGATGTTCTTTATATACTTATGGTGCCCAAGGACAAAGGGAACCTCCTATGT 476
************************************************************
consensus_6206#0 CTATGAGACTTTCTTTAGGCCATACATTTCACAATATGAGAATGATATCGACTGCAGTAT 469
consensus_6206#1 CTATGAGACTTTCTTTAGGCCATACATTTCACAGTATGAGAATGATATCGACTGCAGTAT 536
********************************* **************************
consensus_6206#0 TCTTGATTTGAGAGTAAGAGCTGGGGACATGCTTGTGGTTTACTGGCAGAAGGTTGCAAT 529
consensus_6206#1 TCTTGATTTGAGAGTAAGAGCTGGGGACATGCTTGTGGTTTACTGGCAGAAGGTTGCAAT 596
************************************************************
consensus_6206#0 TATTGGCCAGACTACATTCTTTAACATTTTGAAGTATGCTTCTGCACAGTCACCAGCTCA 589
consensus_6206#1 TATTGGCCAGACTACATTCTTTAACATTTTGAAGTATGCTTCTGCACAGTCACCAGCTCA 656
************************************************************
consensus_6206#0 TTCATCAAGGTCGCGCTCAGCACAGCAGCAATCGTATCCACAAAAACAGCAGCAAGCACA 649
consensus_6206#1 TTCATCAAGGTCGCGCTCAACACAG----------GTTTGCAA-----GCAGAATGTTTT 701
******************* ***** * *** **** * *
consensus_6206#0 ACCCCAACAACCGAAGCAATCACTGCCCCAACAGCAACAGAAGCAATCACTGCCCCAACA 709
consensus_6206#1 ATCTT--CTAGTTTGTTGAATGATAATGGAACAGCATTC--ATCAATCAATGCCTTTTGA 757
* * * * * * ******* * ****** **** *
consensus_6206#0 GCAACAGCAGCAGATGCCCCATGAAAAACCAACAACGCTTCGCAGAGCAGCAT--CTGCT 767
consensus_6206#1 ACACT-----CCTACGTTTGGTTCACAATTCATATTTATGCACAATCTCTTTTGCCTGCT 812
** * * * * * ** * * * * ** * *****
consensus_6206#0 GCCGCTCGAACAGCTGGAATTATGCAGCAGTCGGAGGACACGAAGATTGCTTACTCTA-- 825
consensus_6206#1 AATACCTGAGTTGCAGGTGTCCTGCTATCATAGTTTCGTAGATAAGTGTCATGCCGTAGT 872
* ** ** ** * *** * * * * * * * * **
consensus_6206#0 ACCCCAAGA---CCAGGCGTCTACTACC-CACAAAGTCTGCTCCGACGGCTTCCACAAGG 881
consensus_6206#1 ACTCCAAACTTTCTGTGCAACTACTCCAACTTTGTGTTAAGTTCCATGAGAAATA-GAAG 931
** **** * ** ***** * * ** * * * * * * *
consensus_6206#0 TCCACGGTTGCAGCAACGAAACCGGTCGAGGATCTTAAGAGCAGTGGAATGAAGCTTGCA 941
consensus_6206#1 TTTACATTGTTATTGTGGTTGTTTGTTTGAGATGATTGTAATACTCGAAAATAGAATG-A 990
* ** * * * ** *** * * * * *** ** ** *
consensus_6206#0 ACTGAGGAAGCACCATCTCCATCCAGTAATGCTGCCATGCCAGGCTCTGAGCCTAGTG-C 1000
consensus_6206#1 ACCAAAGATGTTCCATAATAACT------TGCTTCAATCCTAAACTCTTAGCAAGATAAT 1044
** * ** * **** * **** * ** * * **** *** *
consensus_6206#0 GCCGCCACTCCCGAAATCTG-CAGAAGAT---GACATGTCTATCGATGAGGTTGACATTC 1056
consensus_6206#1 GTCACGAAAGACGATATTTAACAGCACCTTCAACTATGTTTG-CGATAAAGGCATTAAAT 1103
* * * * *** ** * *** * * **** * **** * * *
consensus_6206#0 CTATAGAGGACATGGATGAGCCTGTTGCCACTCCAGAGGAGACACCAATGGAGGA----- 1111
consensus_6206#1 TAACAAAAGTCAAAACTAATCAAATTA--AAGCAAGATAATGTCACGAAAGACAATATTT 1161
* * * * ** * * * ** * * *** * * * ** *
consensus_6206#0 GGCGATTCGAGTGACC-CGTGGGAGGCTAAGGAAACGTATTGCCGCAGTTTCCACTGCTG 1170
consensus_6206#1 AGCAGTTCCTTCAACTATGTTTGGGATAAAGGCATTGAATTAACAAAAGT--CAAAACTA 1219
** *** ** ** * * **** * * *** * * * ** **
consensus_6206#0 ATGGCGGTGCAGCAAATTAACTGCATGCCATTTGTCATCTATTTCCACAAAATATGTGCT 1230
consensus_6206#1 ATCAAATTAAAGCGAGACAA-TATTTAAATTGCTCTGTATATTTGTACAAACATTATGTA 1278
** * *** * ** * * * * ***** ***** * **
consensus_6206#0 TCAGAGCTTTAGGGCGATCACCTGTTTGGTTGCAGCAGATATCTCTGTTTCCACATTATG 1290
consensus_6206#1 ATAGAAA---AAAACATCCACGTGT------------GGTATCT----AATAGCAAGACG 1319
*** * * *** *** * ***** ** * *
consensus_6206#0 TTCTTCGAGCTTTAGGGTGATCTGCTGTTTGGTTGCAGGCAGCAGATGTCTTGGTTGGTT 1350
consensus_6206#1 TTTAAGGTGCCGTATGAGGTTATAGTGACCCGTTACAAGGTGCATAGGGTT--GTAGAAA 1377
** * ** ** * * * * ** *** ** * *** * * * ** *
consensus_6206#0 TAATTTATTGCTTTGAACCTGCTTCCTTAAGTAGTGTTTCTTCCACCTGTTTTGCTAATT 1410
consensus_6206#1 GAATGACCAGCCTTCA----GTTCCACAAGGTTGGCAGCCATCCAT-TGCATCACTAA-- 1430
*** ** ** * * * * * ** * * **** ** * ****
consensus_6206#0 TGCTAATATTCCTAGACCTAGAAGATGTAAATATTGCAGGGCATCTGTATATATGTTGGG 1470
consensus_6206#1 -AAGAACATAGTGGGGGTCACAACA-GCCACCAAGACAAAGCAGCA-------------- 1474
** ** * * ** * * * * ** *** *
consensus_6206#0 CAAGCGAATCCTTATTTG 1488
consensus_6206#1 ------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||