These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6208#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1193 fasta sequence [TCTGTTCTTGCCCTGTGGTTTCTTCTCCGTTTGCAGGCTTTATTGCATTGCAGGAAAAGATGGCGGCTTCTCATGGAAATGCGATCTTTGTTCTGCTGCTGTGCACTCTCTTTCTCCCGTCCCTTGCATGTGACAGCGGTGGCGTGAAGTTTGGGTACACTGGTTCTATCGGCCCTGACTTCTGGGGGAATTTGAGTGCCGACTTCACGCGTTGCTCGAACGGAAAGCAGCAGTCCCCAATTGACATCGACACCAACAACCTGGTTCATGAACTGAATATGGAGCCACTCCATAGAAATTATACCGCTGCAAATGCTACTCTTGTCGACAACATCTTCAACGTCGCGCTGCGGTACGAAGAGGCAGCAGGGGTTCTGAGCATTAACGGGGTGAAGTACACGCTGAAGCAGATGCACTGGCACTCTCCTTCCGAGCACACCATCAACGGCTTCAGGTTCCCACTGGAGCTCCACATGGTTCACACCAACGAAAATGGCAACATCACCGTTCTGGCCTTTCTCTACCGATTTGGCAGGCCAGACCCGTTCTTCGAACAGATTCAGGATAAGCTGGCTGCGCTCAACGCGGAGGGCTGCAAGGCAGAGAAAGGCAGCCCGGTCCCTGCCGGATCTGTGAGCTTGCTGACGATGAGGCAGCACGTGCACATATACTACAGATACGTTGGGTCACTGACCACGCCACCGTGCGCCGAGAACGTGATCTGGAACATCCCTGCCATGCCGAGAGAGATGACACCGCAGCAGGCCGCCGATCTGATGGCTCCCCTGGACGAAGGCTACCGCCGGAACAGCAGGCCGACGCAGCAGATGAACGGCCGCACCGTGCAGCTCTACCACAGGTTCTGGGGGAAGAAGAAGAGGAGGAGCTCCCCGTAGGCTGACGACGACGACGTACGACGACGCGCTGGCAGCGCCATCGATCCATCCCGGCCGATGGAGATCGCTGCGTGTTTTGGGGTCCCTTGTGTTGTGTTCTGTCCAGCAGTAGTAGTTTGTTTCTGAAGTCGTGTGTTTATAGCGTCTAGGTTTGCTTTCTTATTTTGGTTACCGGCCATAGTTTGCCCCGGTTTTGCTAGCAGTCCTGAACTGGCTTTGATTTCTGTACTAAGAGACCGGTCTTTTGTCACCCTCTTTAATTACCTACTAATGAAGAACTACTGAGTTCTCAAAAAA] [+] EMBL AK059525 [TCTGTTCTTGCCCTGTGGTTTCTTCTCCGTTTGCAGGCTTTATTGCATTGCAGGAAAAGATGGCGGCTTCTCATGGAAATGCGATCTTTGTTCTGCTGCTGTGCACTCTCTTTCTCCCGTCCCTTGCATGTGACAGCGGTGGCGTGAAGTTTGGGTACACTGGTTCTATCGGCCCTGACTTCTGGGGGAATTTGAGTGCCGACTTCACGCGTTGCTCGAACGGAAAGCAGCAGTCCCCAATTGACATCGACACCAACAACCTGGTTCATGAACTGAATATGGAGCCACTCCATAGAAATTATACCGCTGCAAATGCTACTCTTGTCGACAACATCTTCAACGTCGCGCTGCGGTACGAAGAGGCAGCAGGGGTTCTGAGCATTAACGGGGTGAAGTACACGCTGAAGCAGATGCACTGGCACTCTCCTTCCGAGCACACCATCAACGGCTTCAGGTTCCCACTGGAGCTCCACATGGTTCACACCAACGAAAATGGCAACATCACCGTTCTGGCCTTTCTCTACCGATTTGGCAGGCCAGACCCGTTCTTCGAACAGATTCAGGATAAGCTGGCTGCGCTCAACGCGGAGGGCTGCAAGGCAGAGAAAGGCAGCCCGGTCCCTGCCGGATCTGTGAGCTTGCTGACGATGAGGCAGCACGTGCACATATACTACAGATACGTTGGGTCACTGACCACGCCACCGTGCGCCGAGAACGTGATCTGGAACATCCCTGCCATGCCGAGAGAGATGACACCGCAGCAGGCCGCCGATCTGATGGCTCCCCTGGACGAAGGCTACCGCCGGAACAGCAGGCCGACGCAGCAGATGAACGGCCGCACCGTGCAGCTCTACCACAGGTTCTGGGGGAAGAAGAAGAGGAGGAGCTCCCCGTAGGCTGACGACGACGACGTACGACGACGCGCTGGCAGCGCCATCGATCCATCCCGGCCGATGGAGATCGCTGCGTGTTTTGGGGTCCCTTGTGTTGTGTTCTGTCCAGCAGTAGTAGTTTGTTTCTGAAGTCGTGTGTTTATAGCGTCTAGGTTTGCTTTCTTATTTTGGTTACCGGCCATAGTTTGCCCCGGTTTTGCTAGCAGTCCTGAACTGGCTTTGATTTCTGTACTAAGAGACCGGTCTTTTGTCACCCTCTTTAATTACCTACTAATGAAGAACTACTG ] [-] EMBL CF293801 [ GGACGAAGGCTACCGCCGGAACAGCAGGCCGACGCAGCAGATGAACGGCCGCACCGTGCAGCTCTACCACAGGTTCTGGGGGAAGAAGAAGAGGAGGAGCTCCCCGTAGGCTGACGACGACGACGTACGACGACGCGCTGGCAGCGCCATCGATCCATTCCGGCCGATGGAGATCGCTGCGTGTTTTGGGGTCCCTTGTGTCGTGTTCTGTCCAGCAGTAGTAGTTTGTTTCTGAAGTCGTGTGTTTATAGAGTCTAGGTTTGCTTTCTTATTTTGGTTACCGGCCATAGTTTGCCCCGGTTTTGCTAGCAGTCTTGAACTGGCTTTGATTTCTGTACTAAGAGACCGGTCTTTTGTCACCCTCTTTAATTACCTACTAATGAGAAACTACTGAGTTCTCAAAAAA] consensusID : consensus_6208#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence [AGGCCAGACCCGTTCTTCGAACAGATTCAGGATAAGCTGGCTGCGCTCAACGCGGAGGGCTGCAAGGCAGAGAAAGGCAGCCCGGTCCCTGCCGGATCTGTGAGCTTGCTGACGATGAGGCAGCACGTGCACATATACTACAGATACGTTGGGTCACTTACCACACCACCGTGCGCCGAGAACGTGATCTGGAACATCCCTGCCATGCCGAGAGAGATGACACCGCAGCAGGCCGCCGATCTGATGGCTCCCCTGGACGAAGGCTACCGCCGCAACAGCAGGCCGACGCAGCAGATGAACGGCCGCACCGTGCAGCTCTACCACAGGTTCTGGGGGAAGAAGAAGAGGAGGAGCTCCCCGTAGGCTGACGACGACGACGTACGACGACGCGCTGGCAGCGCCATCGATCCATTCCGGCCGATGGAGATCGCTGCGTGTTCTGGGGTCCCTTGTGTTGTGTTCTGTCCAGCAGCAGTAGTTTGTTTCTGAAGTCGTGTTTATAGCGTCTAGGTTTGCTTTCTTATTTTGGTTACCGGCCATAGATTGCCCCGGTTTTGCTAGCAGTCTTGAACTCTGAAGTTGTTCAGTTTGTCATTTAGGGCTTTGATTTCTGTACTAAGAGACCGGTCTTTTGTCACCCTCTTTAATTACCTACTAATGAAGAACTACTGAGTTCTCAAAAAAA] [-] EMBL CA762709 [AGGCCAGACCCGTTCTTCGAACAGATTCAGGATAAGCTGGCTGCGCTCAACGCGGAGGGCTGCAAGGCAGAGAAAGGCAGCCCGGTCCCTGCCGGATCTGTGAGCTTGCTGACGATGAGGCAGCACGTGCACATATACTACAGATACGTTGGGTCACTTACCACACCACCGTGCGCCGAGAACGTGATCTGGAACATCCCTGCCATGCCGAGAGAGATGACACCGCAGCAGGCCGCCGATCTGATGGCTCCCCTGGACGAAGGCTACCGCCGCAACAGCAGGCCGACGCAGCAGATGAACGGCCGCACCGTGCAGCTCTACCACAGGTTCTGGGGGAAGAAGAAGAGGAGGAGCTCCCCGTAGGCTGACGACGACGACGTACGACGACGCGCTGGCAGCGCCATCGATCCATTCCGGCCGATGGAGATCGCTGCGTGTTCTGGGGTCCCTTGTGTTGTGTTCTGTCCAGCAGCAGTAGTTTGTTTCTGAAGTCGTGTTTATAGCGTCTAGGTTTGCTTTCTTATTTTGGTTACCGGCCATAGATTGCCCCGGTTTTGCTAGCAGTCTTGAACTCTGAAGTTGTTCAGTTTGTCATTTAGGGCTTTGATTTCTGTACTAAGAGACCGGTCTTTTGTCACCCTCTTTAATTACCTACTAATGAAGAACTACTGAGTTCTCAAAAAAA] consensusID : consensus_6208#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 490 fasta sequence [CGCCCAAGTTAGCACCTTCACCAGCAGCAGCGTTCTTGCTCTTGGAAATCTTCTGGCCTTCGAAGATTCCTGCAGCCGTCGAGCAAAGAGGAACATCTACTAGTCGGAGCACGGCCACTTTGGTTCCAGGGACCAAACTCCAAAGGGTTGAAGCTGATCTGCATATAGCAAAGTAGAGGCTTTATTGCATTGCAGGAAAAGATGGCAGCTTCTCATGGAAATGCGATCTTTGTTCTGCTGCTGTGCACTCTCTTTCTCCCGTCCCTTGCATGTGACAGCGGTGGCGTGAAGTTTGGGTACACTGGTTCTATCGGCCCTGACTTCTGGGGGAATTTGAGTGCCGACTTCACGCGTTGCTCGAACGGAAAGCAGCAGTCCCCAATTGACATCGACACCAACAACCTGGTTCATGAACTGAATATGGAGCCACTCCATAGAAATTATACCGCTGCAAATGCTACTCTTGTCGACAACATCTTCAACGTCGCGC] [+] EMBL CF293800 [CGCCCAAGTTAGCACCTTCACCAGCAGCAGCGTTCTTGCTCTTGGAAATCTTCTGGCCTTCGAAGATTCCTGCAGCCGTCGAGCAAAGAGGAACATCTACTAGTCGGAGCACGGCCACTTTGGTTCCAGGGACCAAACTCCAAAGGGTTGAAGCTGATCTGCATATAGCAAAGTAGAGGCTTTATTGCATTGCAGGAAAAGATGGCAGCTTCTCATGGAAATGCGATCTTTGTTCTGCTGCTGTGCACTCTCTTTCTCCCGTCCCTTGCATGTGACAGCGGTGGCGTGAAGTTTGGGTACACTGGTTCTATCGGCCCTGACTTCTGGGGGAATTTGAGTGCCGACTTCACGCGTTGCTCGAACGGAAAGCAGCAGTCCCCAATTGACATCGACACCAACAACCTGGTTCATGAACTGAATATGGAGCCACTCCATAGAAATTATACCGCTGCAAATGCTACTCTTGTCGACAACATCTTCAACGTCGCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6208#0 TCTGTTCTTGCCCTGTGGTTTCTTCTCCGTTTGCAGGCTTTATTGCATTGCAGGAAAAGA 60 consensus_6208#1 ------------------------------------------------------------ consensus_6208#2 ------------------------------------------------------------ consensus_6208#0 TGGCGGCTTCTCATGGAAATGCGATCTTTGTTCTGCTGCTGTGCACTCTCTTTCTCCCGT 120 consensus_6208#1 ------------------------------------------------------------ consensus_6208#2 ------------------------------------------------------------ consensus_6208#0 CCCTTGCATGTGACAGCGGTGGCGTGAAGTTTGGGTACACTGGTTCTATCGGCCCTGACT 180 consensus_6208#1 ------------------------------------------------------------ consensus_6208#2 ------------------------------------------------------------ consensus_6208#0 TCTGGGGGAATTTGAGTGCCGACTTCACGCGTTGCTCGAACGGAAAGCAGCAGTCCCCAA 240 consensus_6208#1 ------------------------------------------------------------ consensus_6208#2 ------------------------------------------------------------ consensus_6208#0 TTGACATCGACACCAACAACCTGGTTCATGAACTGAATATGGAGCCACTCCATAGAAATT 300 consensus_6208#1 ------------------------------------------------------------ consensus_6208#2 ------------------------------------------------------------ consensus_6208#0 ATACCGCTGCAAATGCTACTCTTGTCGACAACATCTTCAACGTCGCGCTGCGGTACGAAG 360 consensus_6208#1 ------------------------------------------------------------ consensus_6208#2 ------------------------------------------------------------ consensus_6208#0 AGGCAGCAGGGGTTCTGAGCATTAACGGGGTGAAGTACACGCTGAAGCAGATGCACTGGC 420 consensus_6208#1 ------------------------------------------------------------ consensus_6208#2 ------------------------------------------------------------ consensus_6208#0 ACTCTCCTTCCGAGCACACCATCAACGGCTTCAGGTTCCCACTGGAGCTCCACATGGTTC 480 consensus_6208#1 ------------------------------------------------------------ consensus_6208#2 ------------------------------------------------------------ consensus_6208#0 ACACCAACGAAAATGGCAACATCACCGTTCTGGCCTTTCTCTACCGATTTGGCAGGCCAG 540 consensus_6208#1 -----------------------------------------------------AGGCCAG 7 consensus_6208#2 ------------------------------------------------------------ consensus_6208#0 ACCCGTTCTTCGAACAGATTCAGGATAAGCTGGCTGCGCTCAACGCGGAGGGCTGCAAGG 600 consensus_6208#1 ACCCGTTCTTCGAACAGATTCAGGATAAGCTGGCTGCGCTCAACGCGGAGGGCTGCAAGG 67 consensus_6208#2 ------------------------------------------------------------ consensus_6208#0 CAGAGAAAGGCAGCCCGGTCCCTGCCGGATCTGTGAGCTTGCTGACGATGAGGCAGCACG 660 consensus_6208#1 CAGAGAAAGGCAGCCCGGTCCCTGCCGGATCTGTGAGCTTGCTGACGATGAGGCAGCACG 127 consensus_6208#2 ------------------------------------------------------------ consensus_6208#0 TGCACATATACTACAGATACGTTGGGTCACTGACCACGCCACCGTGCGCCGAGAACGT-- 718 consensus_6208#1 TGCACATATACTACAGATACGTTGGGTCACTTACCACACCACCGTGCGCCGAGAACGT-- 185 consensus_6208#2 --CGCCCAAGTTA---GCACCTTCA-CCAGCAGCAGCGTTCTTGCTCTTGGAAATCTTCT 54 * * * ** ** ** ** * * * * ** * * * consensus_6208#0 -GATCTGGAACATCCCTGCCAT-GCCGAGAGAGATGACACCGCAGCAGGCCGCCGATCTG 776 consensus_6208#1 -GATCTGGAACATCCCTGCCAT-GCCGAGAGAGATGACACCGCAGCAGGCCGCCGATCTG 243 consensus_6208#2 GGCCTTCGAAGATTCCTGCAGCCGTCGAGCAAAGAGGAACATCTACTAGTCG--GAGC-- 110 * * *** ** ***** * **** * * ** * * * ** ** * consensus_6208#0 ATGGCTCCCCTGGACGAAGGCTACCGCCGGAACAGCAGGCCGACGCAGCAGATGAACG-G 835 consensus_6208#1 ATGGCTCCCCTGGACGAAGGCTACCGCCGCAACAGCAGGCCGACGCAGCAGATGAACG-G 302 consensus_6208#2 ACGGCCACTTTGGTTCCAGG-----GACCAAACTCCAAAGGGTTGAAGCTGATCTGCATA 165 * *** * *** *** * * *** ** * * *** *** * consensus_6208#0 CCGCACCGTGCAG-CTCTACCACAGGTTCTGGGGGAAGAAGAAGAGGAGGAGCTCCCCGT 894 consensus_6208#1 CCGCACCGTGCAG-CTCTACCACAGGTTCTGGGGGAAGAAGAAGAGGAGGAGCTCCCCGT 361 consensus_6208#2 TAGCAAAGTAGAGGCTTTATTGCA--TTGCAGGAAAAGATG-------GCAGCTTCTCAT 216 *** ** ** ** ** ** ** ** **** * * **** * * * consensus_6208#0 AGGCTGACGA-CGACGACGTACGACGACGCGCTGGCAGCGCCATCGATCCATCCCGGCCG 953 consensus_6208#1 AGGCTGACGA-CGACGACGTACGACGACGCGCTGGCAGCGCCATCGATCCATTCCGGCCG 420 consensus_6208#2 GGAAATGCGATCTTTGTTCTGCTGCTGTGCACTCTC--TTTCTCCCGTCCCTTGCATGTG 274 * *** * * * * * ** ** * * * *** * * * consensus_6208#0 ATGGAGATCGCTGCGTGTTTTGGGGTCCCTTGTGTTGT--GTTCTGTCCAGCAGTAGTAG 1011 consensus_6208#1 ATGGAGATCGCTGCGTGTTCTGGGGTCCCTTGTGTTGT--GTTCTGTCCAGCAGCAGTAG 478 consensus_6208#2 ACAGCGGTGGC-GTGAAGTTTGGGTACACTGGTTCTATCGGCCCTGACTTCTGGGGGAAT 333 * * * * ** * * * **** * ** ** * * * *** * * * * consensus_6208#0 TTTGTTTCTGAAGTCGTGTGTTTATAGCGTCTAGGTTTGCTTTCTTATTTTGGTTACCGG 1071 consensus_6208#1 TTTGTTTCTGAAGTCGTGT--TTATAGCGTCTAGGTTTGCTTTCTTATTTTGGTTACCGG 536 consensus_6208#2 TTGAGTGCCGACTTCACGCGTTGCTCGAACGGAAAGCAGCAGTCCCCAATTGAC-ATCGA 392 ** * * ** ** * * * * * ** ** *** * ** consensus_6208#0 CCATAGTTTGCCCCGGTTTTGCTAGCAGTCCTGAACT----------------------- 1108 consensus_6208#1 CCATAGATTGCCCCGGTTTTGCTAGCAGTCTTGAACTCTGAAGTTGTTCAGTTTGTCATT 596 consensus_6208#2 C-ACCAACAACCTGGTTCATGAACTGAATATGGAGCC-----------------ACTCCA 434 * * ** * * ** * * ** * consensus_6208#0 ---GGCTTTGATTTCTGTACTAAGAGACCGGTCTT-TTGTCACCCTCTTTAATTACCTAC 1164 consensus_6208#1 TAGGGCTTTGATTTCTGTACTAAGAGACCGGTCTT-TTGTCACCCTCTTTAATTACCTAC 655 consensus_6208#2 TAGAAATTATACCGCTGCA----AATGCTACTCTTGTCGACAACATCTTCAACGTCGCGC 490 ** * *** * * * **** * * ** * **** ** * * consensus_6208#0 TAATGAAGAACTACTGAGTTCTCAAAAAA- 1193 consensus_6208#1 TAATGAAGAACTACTGAGTTCTCAAAAAAA 685 consensus_6208#2 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||