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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6209#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1607 fasta sequence
[TATAGATAATCTGTTGATGATGCTCTAAACAGTACTATCAATGCAATTTACTCGTAAATGAACAAACCCTATGTCTCACAAAATTTTCTTCCCAAAAGGCCTACAGGAACGCGCTANTCTTGATTCTGGAGCGATTCCCGCAGCCTAACCAGAAGCCCCATCCAATCCAGGTCGACCAGCGCGGCGGATCCAGAGCCGTAGCTCCTCGGAGTCCCTGTCTCTGTGGACGCTCTCACCCTAATCCGACGCCGGGCCTCTCCGATCTTCCTTCGCCTTGTGCTGTGGCTTCTCTTCCCCCTCTATATATCCCTATCAGCGAGATGCTCCACTCATGGCGGCATCTACAACGGGCTTNCCGGTTTTCGTATGGATCAACAACAACCAGCATTGGANGGAAAGGGGAGAACAAATGGGGCAAGCCATTTCGGAGCAGATGCTTCCCCCCTCATGCCAATGCATCTTTGTACAACACTGCCCAAGGCGACCACTGAGCTGTCACTGAAGAGATGTATCGAGCAGAGAAGAGAGGGGGAATTAATGGGCTCGTTGTTAGCCATTCCGCTGTTGACATGTTCTCGATGACAATCATTGAGAATTCAAGACACCGTGATGGTTCTATATATAGAAATAAGGCCTTCGAAGGACATTTCTGTATCACTAACCGCGATGAGACTCGGTTGGAGCCAATGATGTTCTCGGAGCCAACAGATTGCCGACCTAGTTGGGAAACTTGCAGTATGCATTCAGCATGTGCCATGATGCAAATTTTCTCACTAAAGTTGGCTAAAATTCCTATTGACAATGACTGCATACAATTATATGGATACATAGCAGTGCGGGATGATTTGGATAAATTGCTTAATTATGTTGTCAACTATAGCAGGGATAATCCCATCATTATGCGGCAGGGAGATCTGATTGAAATGACTGGCCCCAAGCGAGGCATATCAATGTGTTGCTCTGTTCTATTGGAGTTTGACATGAGGATAAAAAAAGGAGAGTAAGAAAAAGATGACCTACAGTTAATTGATGGAGCAATAGATTATATCGGGCTAATTACAGCAACGTTTCCATTCACAAAACGCATTAATGGTGATTGTGGTGCAGTTGATATCACTTTAGCACGTGTTTACTGGGCCGTAGAGGCCACCATACAAGTTATCATATCAGATGTGCAAAGTGGTTTCAATTTATATCTCAGTTCCTTGTGTTTTGTTAGTGATGTATGGAAAGAAATTCAACTCTTCAATGGCCCTATTGGTGAGTCATGTGGCTTAAGAAGATATGTGGTTGCTGTATCCTTGGACACTTGGATGCATTTGAAGTTGAAGGTAGGCCAAAAAGGCTCTAACCATTATGTTGAACGCTATTGTTCTTTCAAAGCAATCAACCATGGATGTTCCAGTCAACAAATATTGGGTGAGCTTGCATCTATCTCGATGAAGGTGACCTGGTCAACTTTACTAGATTAAACTCCTGGAATGTGTTTCTTACCAACCGTCACAAATAAGTGATGTTTTTATGATGCATGCAGTCAAGATGTTAAACTTTGACCACTAATATCTCTTTGAATATTTAGATTCAACTTTTAGAAATATTACGGCTAG]
[+] EMBL C72977 [TATAGATAATCTGTTGATGATGCTCTAAACAGTACTATCAATGCAATTTACTCGTAAATGAACAAACCCTATGTCTCACAAAATTTTCTTCCCAAAAGGCCTACAGGAACGCGCTANTCTTGATTCTGGAGCGATTCCCGCAGCCTAACCAGAAGCCCCATCCAATCCAGGTCGACCAGCGCGGCGGATCCAGAGCCGTAGCTCCTCGGAGTCCCTGTCTCTGTGGACGCTCTCACCCTAATCCGACGCCGGGCCTCTCCGATCTTCCTTCGCCTTGTGCTGTGGCTTCTCTTCCCCCTCTATATATCCCTATCAGCGAGATGCTCCACTCATGGCGGCATCTACAACGGGCTTNCCGGTTTTCGTATGGATCAACAACAACCAGCATTGGANGGA ]
[+] EMBL AK121936 [ CAGAGCCGTAGCTCCTCGGAGTCCCTGTCTCTGTGGACGCTCTCACCCTAATCCGACGCCGGGCCTCTCCGATCTTCCTTCGCCTTGTGCTGTGGCTTCTCTTCCCCCTCTATATATCCCTATCAGCGAGATGCTCCACTCATGGCGGCATCTACAACGGGCTTCCCGGTTTTCGTATGGATCAACAACAACCAGCATTGGAGGGAAAGGGGAGAACAAATGGGGCAAGCCATTTCGGAGCAGATGCTTCCCCCCTCATGCCAATGCATCTTTGTACAACACTGCCCAAGGCGACCACTGAGCTGTCACTGAAGAGATGTATCGAGCAGAGAAGAGAGGGGGAATTAATGGGCTCGTTGTTAGCCATTCCGCTGTTGACATGTTCTCGATGACAATCATTGAGAATTCAAGACACCGTGATGGTTCTATATATAGAAATAAGGCCTTCGAAGGACATTTCTGTATCACTAACCGCGATGAGACTCGGTTGGAGCCAATGATGTTCTCGGAGCCAACAGATTGCCGACCTAGTTGGGAAACTTGCAGTATGCATTCAGCATGTGCCATGATGCAAATTTTCTCACTAAAGTTGGCTAAAATTCCTATTGACAATGACTGCATACAATTATATGGATACATAGCAGTGCGGGATGATTTGGATAAATTGCTTAATTATGTTGTCAACTATAGCAGGGATAATCCCATCATTATGCGGCAGGGAGATCTGATTGAAATGACTGGCCCCAAGCGAGGCATATCAATGTGTTGCTCTGTTCTATTGGAGTTTGACATGAGGATAAAAAAAGGAGAGTAAGAAAAAGATGACCTACAGTTAATTGATGGAGCAATAGATTATATCGGGCTAATTACAGCAACGTTTCCATTCACAAAACGCATTAATGGTGATTGTGGTGCAGTTGATATCACTTTAGCACGTGTTTACTGGGCCGTAGAGGCCACCATACAAGTTATCATATCAGATGTGCAAAGTGGTTTCAATTTATATCTCAGTTCCTTGTGTTTTGTTAGTGATGTATGGAAAGAAATTCAACTCTTCAATGGCCCTATTGGTGAGTCATGTGGCTTAAGAAGATATGTGGTTGCTGTATCCTTGGACACTTGGATGCATTTGAAGTTGAAGGTAGGCCAAAAAGGCTCTAACCATTATGTTGAACGCTATTGTTCTTTCAAAGCAATCAACCATGGATGTTCCAGTCAACAAATATTGGGTGAGCTTGCATCTATCTCGATGAAGGTGACCTGGTCAACTTTACTAGATTAAACTCCTGGAATGTGTTTCTTACCAACCGTCACAAATAAGTGATGTTTTTATGATGCATGCAGTCAAGATGTTAAACTTTGACCACTAATATCTCTTTGAATATTTAGATTCAACTTTTAGAAATATTACGGCTAG]
[+] EMBL AU172567 [ ATATCACTTTAGCACGTGTTTACTGGGCCGTAGAGGCCACCATACAAGTTATCATATCAGATGTGCAAAGTGGTTTCAATTTATATCTCAGTTCCTTGTGTTTTGTTAGTGATGTATGGAAAGAAATTCAACTCTTCAATGGCCCTATTGGTGAGTCATGTGGCTTAAGAAGATATGTGGTTGCTGTATCCTTGGACACTTGGATGCATTTGAAGTTGAAGGTAGGCCAAAAAGGCTCTAACCATTATGTTGAACGCTATTGTTCTTTCAAAGCAATCAACCATGGATGTTCCAGTCAACAAATATTGGGTGAGCTTGCATCTATCTCGATGAAGGTGACCTGGTCAACTTTACTAGATTAAACTCCTGGAATGTGTTTCTTACCAACCGTCACAAATAAGTGATGTTTTTATGATGCATGCAaaaa ]
consensusID : consensus_6209#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 703 fasta sequence
[CGGATCCAGAGCCGTAGCTCCTCGGAGTCCCTGTCTCTGTGGACGCTCTCACCCTAATCCGACGCCGGGCCTCTCCGATCTTCCTTCGCCTTGTGCTGTGGCTTCTCTTCCCCCTCTATATACCCCTATCAGCGAGATGCTCCACTCATGGCGGCATCTACAACGGGCTTCCCGGTTTTCGTATGGATCAACAACAACCAGCATTGGAGGGGAAGGGGAGAACAAATGGGGCAAGCCATTTCGGAGCAGATGCTTCCCCCCTCATGCCAATGCATCTTTGTACAACACTGCCCAAGGCGACCACTGAGCTGTCACTGAAGAGATGTATCGAGCAGAGAAGAGAGGGGGAATTAATGGGCTCGTTGTTAGCCATTCCGCTGTTGACATGTTCTCGATGACAATCATTGAGAATTCAAGACACCGTGATGGTTCTATATATAGAAATAAGGCCTTTGAAGGACATTTCTGTATCACTAACCGCGATGAGAGTAAGTGATCAAAACCTTCTCCTTCTTTTTCTAATTTGATATGATTTGTTTTAGTACTAATAAATATAATATGGATTCTGGTAACCAAAATGCCAAGTAAATTTGTTACTCTAACTACAATATGATTTCTTTATATTTTCTTCTTTCCTACTATTGGTTTCATTCGTATGTGCAATCAATCCACTTAGGTGAAATCCAAATATTGGTGTAATTCT]
[+] EMBL CA765279 [CGGATCCAGAGCCGTAGCTCCTCGGAGTCCCTGTCTCTGTGGACGCTCTCACCCTAATCCGACGCCGGGCCTCTCCGATCTTCCTTCGCCTTGTGCTGTGGCTTCTCTTCCCCCTCTATATACCCCTATCAGCGAGATGCTCCACTCATGGCGGCATCTACAACGGGCTTCCCGGTTTTCGTATGGATCAACAACAACCAGCATTGGAGGGGAAGGGGAGAACAAATGGGGCAAGCCATTTCGGAGCAGATGCTTCCCCCCTCATGCCAATGCATCTTTGTACAACACTGCCCAAGGCGACCACTGAGCTGTCACTGAAGAGATGTATCGAGCAGAGAAGAGAGGGGGAATTAATGGGCTCGTTGTTAGCCATTCCGCTGTTGACATGTTCTCGATGACAATCATTGAGAATTCAAGACACCGTGATGGTTCTATATATAGAAATAAGGCCTTTGAAGGACATTTCTGTATCACTAACCGCGATGAGAGTAAGTGATCAAAACCTTCTCCTTCTTTTTCTAATTTGATATGATTTGTTTTAGTACTAATAAATATAATATGGATTCTGGTAACCAAAATGCCAAGTAAATTTGTTACTCTAACTACAATATGATTTCTTTATATTTTCTTCTTTCCTACTATTGGTTTCATTCGTATGTGCAATCAATCCACTTAGGTGAAATCCAAATATTGGTGTAATTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6209#0 TATAGATAATCTGTTGATGATGCTCTAAACAGTACTATCAATGCAATTTACTCGTAAATG 60
consensus_6209#1 ------------------------------------------------------------
consensus_6209#0 AACAAACCCTATGTCTCACAAAATTTTCTTCCCAAAAGGCCTACAGGAACGCGCTANTCT 120
consensus_6209#1 ------------------------------------------------------------
consensus_6209#0 TGATTCTGGAGCGATTCCCGCAGCCTAACCAGAAGCCCCATCCAATCCAGGTCGACCAGC 180
consensus_6209#1 ------------------------------------------------------------
consensus_6209#0 GCGGCGGATCCAGAGCCGTAGCTCCTCGGAGTCCCTGTCTCTGTGGACGCTCTCACCCTA 240
consensus_6209#1 ----CGGATCCAGAGCCGTAGCTCCTCGGAGTCCCTGTCTCTGTGGACGCTCTCACCCTA 56
********************************************************
consensus_6209#0 ATCCGACGCCGGGCCTCTCCGATCTTCCTTCGCCTTGTGCTGTGGCTTCTCTTCCCCCTC 300
consensus_6209#1 ATCCGACGCCGGGCCTCTCCGATCTTCCTTCGCCTTGTGCTGTGGCTTCTCTTCCCCCTC 116
************************************************************
consensus_6209#0 TATATATCCCTATCAGCGAGATGCTCCACTCATGGCGGCATCTACAACGGGCTTNCCGGT 360
consensus_6209#1 TATATACCCCTATCAGCGAGATGCTCCACTCATGGCGGCATCTACAACGGGCTTCCCGGT 176
****** *********************************************** *****
consensus_6209#0 TTTCGTATGGATCAACAACAACCAGCATTGGANGGAAAGGGGAGAACAAATGGGGCAAGC 420
consensus_6209#1 TTTCGTATGGATCAACAACAACCAGCATTGGAGGGGAAGGGGAGAACAAATGGGGCAAGC 236
******************************** ** ************************
consensus_6209#0 CATTTCGGAGCAGATGCTTCCCCCCTCATGCCAATGCATCTTTGTACAACACTGCCCAAG 480
consensus_6209#1 CATTTCGGAGCAGATGCTTCCCCCCTCATGCCAATGCATCTTTGTACAACACTGCCCAAG 296
************************************************************
consensus_6209#0 GCGACCACTGAGCTGTCACTGAAGAGATGTATCGAGCAGAGAAGAGAGGGGGAATTAATG 540
consensus_6209#1 GCGACCACTGAGCTGTCACTGAAGAGATGTATCGAGCAGAGAAGAGAGGGGGAATTAATG 356
************************************************************
consensus_6209#0 GGCTCGTTGTTAGCCATTCCGCTGTTGACATGTTCTCGATGACAATCATTGAGAATTCAA 600
consensus_6209#1 GGCTCGTTGTTAGCCATTCCGCTGTTGACATGTTCTCGATGACAATCATTGAGAATTCAA 416
************************************************************
consensus_6209#0 GACACCGTGATGGTTCTATATATAGAAATAAGGCCTTCGAAGGACATTTCTGTATCACTA 660
consensus_6209#1 GACACCGTGATGGTTCTATATATAGAAATAAGGCCTTTGAAGGACATTTCTGTATCACTA 476
************************************* **********************
consensus_6209#0 ACCGCGATGAGACTCGGTTGGAGCCAATGATGTTCTCGGAGCCAACAGATTGCCGACCTA 720
consensus_6209#1 ACCGCGATGAGAGTAAGT---GATCAA-AACCTTCTCCTTCTT------TTTCTAATTTG 526
************ * ** *** * ***** ** * * *
consensus_6209#0 GTTGGGAAACTTGCAGTATGCATTCAGCATGTGCCATGATGCAAATTTTCTCACTAAAGT 780
consensus_6209#1 ATATGATTTGTTTTAGTACTAATAAA--------TATAATATGGATTCTGGTAACCAAAA 578
* * ** **** ** * ** ** *** * * **
consensus_6209#0 TGGCTAAAATTCCTATTGACAATGACTGCA-TACAATTATATGGATACATAGCAGTGCGG 839
consensus_6209#1 TGCCAAGTAAATTTGTT-ACTCTAACTACAATATGATT-TCTTTATATTTTCTTCTTTCC 636
** * * * * ** ** * *** ** ** *** * * *** * *
consensus_6209#0 GATGATTTGGATAAATTGCTTAATTATGTTGTCAACTATAGCAGGGATAATCCCATCATT 899
consensus_6209#1 TACTATTGGTTTCATTCGTAT----GTGCAATCAATCCACTTAGGTGAAATCCAAATATT 692
* *** * * * * * * ** **** *** ***** * ***
consensus_6209#0 ATGCGGCAGGGAGATCTGATTGAAATGACTGGCCCCAAGCGAGGCATATCAATGTGTTGC 959
consensus_6209#1 G------GTGTAATTCT------------------------------------------- 703
* * ***
consensus_6209#0 TCTGTTCTATTGGAGTTTGACATGAGGATAAAAAAAGGAGAGTAAGAAAAAGATGACCTA 1019
consensus_6209#1 ------------------------------------------------------------
consensus_6209#0 CAGTTAATTGATGGAGCAATAGATTATATCGGGCTAATTACAGCAACGTTTCCATTCACA 1079
consensus_6209#1 ------------------------------------------------------------
consensus_6209#0 AAACGCATTAATGGTGATTGTGGTGCAGTTGATATCACTTTAGCACGTGTTTACTGGGCC 1139
consensus_6209#1 ------------------------------------------------------------
consensus_6209#0 GTAGAGGCCACCATACAAGTTATCATATCAGATGTGCAAAGTGGTTTCAATTTATATCTC 1199
consensus_6209#1 ------------------------------------------------------------
consensus_6209#0 AGTTCCTTGTGTTTTGTTAGTGATGTATGGAAAGAAATTCAACTCTTCAATGGCCCTATT 1259
consensus_6209#1 ------------------------------------------------------------
consensus_6209#0 GGTGAGTCATGTGGCTTAAGAAGATATGTGGTTGCTGTATCCTTGGACACTTGGATGCAT 1319
consensus_6209#1 ------------------------------------------------------------
consensus_6209#0 TTGAAGTTGAAGGTAGGCCAAAAAGGCTCTAACCATTATGTTGAACGCTATTGTTCTTTC 1379
consensus_6209#1 ------------------------------------------------------------
consensus_6209#0 AAAGCAATCAACCATGGATGTTCCAGTCAACAAATATTGGGTGAGCTTGCATCTATCTCG 1439
consensus_6209#1 ------------------------------------------------------------
consensus_6209#0 ATGAAGGTGACCTGGTCAACTTTACTAGATTAAACTCCTGGAATGTGTTTCTTACCAACC 1499
consensus_6209#1 ------------------------------------------------------------
consensus_6209#0 GTCACAAATAAGTGATGTTTTTATGATGCATGCAGTCAAGATGTTAAACTTTGACCACTA 1559
consensus_6209#1 ------------------------------------------------------------
consensus_6209#0 ATATCTCTTTGAATATTTAGATTCAACTTTTAGAAATATTACGGCTAG 1607
consensus_6209#1 ------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||