These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6217#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1612 fasta sequence [ACCTCGTCTACACTTCTCCAAATCCCCCCACGGCGCATCGCCCGCTCGCCCTCGCCGCCACCACCACCCGCCTCCGGCCACCGCACACTAGGGCGGCTTGAGCCCCAGCGCCGCCGCCATGGACGAGGAAGCGAAGCCGAACCCTAACGCCGACGCGGCGCCTGCTGCAGCGGAGGCAGCAGCGTCTTCTCCGCCGCCGCTTTCGAGCTCGGAGTCGGCGGAGGGGAAGGATAAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGCGGGGGATTTGGTGGAGAAGCTGGTGGAGTTGGTGGAAGAGATCGCCGCCATCTCGGACTTCAGGAATGCATACCGGCGGCAGTTCTGCAACCTGTCGCGGCGGATCCGGCTGCTCGCGCCCATGCTGGAGGAGGCCAAGGAGGGGCCGCGGCCGCTGCCGGATGTGTCGTATTCCGCTCTCCGGCGGCTCAGGGAGGCGCTCGCTGACTCCAGGGAGCTCCTCCGGCTCGGCGTCAGCGGTAGCAAGATCTCCCTGGTTCTTGAGAGAGAGAAAATAATGAAGTCTTTCCAGGATATTACTGCAAGGCTTGAACAAGCCTTAGGTTTAATCTCATTTGATGAACTTGACATATCAGATGAAGTAAGAGAACAGGTTGAATTGGTACATGCTCAGTTCAAAAGAGCTAAAGAACGATCTGATCCATCTGATGATGATCTCTTTAATGATTTGGTGTCCGTCTACAACTCAAGCACCAGTGCTAATGTTGACCCAGATATTCTCCAGAGGTTATCTGACAAGTTGCAGCTTGCCACTATATCAGACCTCAATCAAGAATCATTGATCTTGCACGAGATGGCTAGTGGCGGTGATCCTGGTGCCGTTGTTGAGAAGATGTCAATGCTGCTAAAAAGAATCAAGGATTTTGTGCAGAGTCGAGATCCTGAAATGGGAACCCCAGTAAATACGACAGAACTTTCGGGAAAAGACAACATGGCATCTCTGATTGTTCCGGATGATTTCCGTTGCCCCATATCGCTGGATTTAATGAAAGATCCAGTTATTGTTGCCACTGGACAGACTTATGAGCGAGGATGCATAGAGAGATGGTTGGAGGCTGGGCATGACACCTGTCCAAAGACACAGCAGAAGCTTCCCAATAAATCTCTAACCCCAAATTATGTCTTACGCAGCCTTATAGCTCAATGGTGTGAAGCAAATGGTATGGAGCCACCAAAACGTGCTGCTCAACATCATAATGCACCAGCATCATGTACCGCTGCTGAACATAGCAACGTCGTTGAGCTTCTTCAGAAATTATTGTCACAAAACCTAGAAGACCAGCGTGAGGCTGCAGGTATGCTTCGTCAGCTTGCCAAGCGCAGTCCTGAAAATCGTGCTTGTATAGGAGATGCTGGTGCTATTCCTATTCTTGTTAGCCTGCTATCTATAACTGATGTTAGCACTCAAGAGCATGTAGTTACTGCTCTCTTGAATCTTTCGATATATGAAGAGAACAAGGCAAGAATAATCACCTCTGGAGCTGTTCCTGGAGTAGTTCATGTGTTGAAGAGGGGAAGCATGGAGGCTCGGGAGAATTCAGCTGCCACACTGTTCAGTCTT] [+] EMBL AK121978 [ACCTCGTCTACACTTCTCCAAATCCCCCCACGGCGCATCGCCCGCTCGCCCTCGCCGCCACCACCACCCGCCTCCGGCCACCGCACACTAGGGCGGCTTGAGCCCCAGCGCCGCCGCCATGGACGAGGAAGCGAAGCCGAACCCTAACGCCGACGCGGCGCCTGCTGCAGCGGAGGCAGCAGCGTCTTCTCCGCCGCCGCTTTCGAGCTCGGAGTCGGCGGAGGGGAAGGATAAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGCGGGGGATTTGGTGGAGAAGCTGGTGGAGTTGGTGGAAGAGATCGCCGCCATCTCGGACTTCAGGAATGCATACCGGCGGCAGTTCTGCAACCTGTCGCGGCGGATCCGGCTGCTCGCGCCCATGCTGGAGGAGGCCAAGGAGGGGCCGCGGCCGCTGCCGGATGTGTCGTATTCCGCTCTCCGGCGGCTCAGGGAGGCGCTCGCTGACTCCAGGGAGCTCCTCCGGCTCGGCGTCAGCGGTAGCAAGATCTCCCTGGTTCTTGAGAGAGAGAAAATAATGAAGTCTTTCCAGGATATTACTGCAAGGCTTGAACAAGCCTTAGGTTTAATCTCATTTGATGAACTTGACATATCAGATGAAGTAAGAGAACAGGTTGAATTGGTACATGCTCAGTTCAAAAGAGCTAAAGAACGATCTGATCCATCTGATGATGATCTCTTTAATGATTTGGTGTCCGTCTACAACTCAAGCACCAGTGCTAATGTTGACCCAGATATTCTCCAGAGGTTATCTGACAAGTTGCAGCTTGCCACTATATCAGACCTCAATCAAGAATCATTGATCTTGCACGAGATGGCTAGTGGCGGTGATCCTGGTGCCGTTGTTGAGAAGATGTCAATGCTGCTAAAAAGAATCAAGGATTTTGTGCAGAGTCGAGATCCTGAAATGGGAACCCCAGTAAATACGACAGAACTTTCGGGAAAAGACAACATGGCATCTCTGATTGTTCCGGATGATTTCCGTTGCCCCATATCGCTGGATTTAATGAAAGATCCAGTTATTGTTGCCACTGGACAGACTTATGAGCGAGGATGCATAGAGAGATGGTTGGAGGCTGGGCATGACACCTGTCCAAAGACACAGCAGAAGCTTCCCAATAAATCTCTAACCCCAAATTATGTCTTACGCAGCCTTATAGCTCAATGGTGTGAAGCAAATGGTATGGAGCCACCAAAACGTGCTGCTCAACATCATAATGCACCAGCATCATGTACCGCTGCTGAACATAGCAACGTCGTTGAGCTTCTTCAGAAATTATTGTCACAAAACCTAGAAGACCAGCGTGAGGCTGCAGGTATGCTTCGTCAGCTTGCCAAGCGCAGTCCTGAAAATCGTGCTTGTATAGGAGATGCTGGTGCTATTCCTATTCTTGTTAGCCTGCTATCTATAACTGATGTTAGCACTCAAGAGCATGTAGTTACTGCTCTCTTGAATCTTTCGATATATGAAGAGAACAAGGCAAGAATAATCACCTCTGGAGCTGTTCCTGGAGTAGTTCATGTGTTGAAGAGGGGAAGCATGGAGGCTCGGGAGAATTCAGCTGCCACACTGTTCAGTCTT] [+] EMBL CA758916 [ TGTGAAGCAAATGGTATGGAGCCACCAAAACGTGCTGCTCAACATCATAATGCACCAGCATCATGTACCGCTGCTGAACATAGCAACGTCGTTGAGCTTCTTCAGAAATTATTGTCACAAAACCTAGAAGACCAGCGTGAGGCTGCAGGTATGCTTCGTCAGCTTGCCAAGCGCAGTCCTGAAAATCGTGCTTGTATAGGAGATGCTGGTGCTATTCCTATTCTTGTTAGCCTGCT ] consensusID : consensus_6217#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 776 fasta sequence [TACACTTCTCCAAATCCCCCCACGGCGCATCGCCCGCTCGCCCTCGCCGCCACCACCACCCGCCTCCGGCCACCGCACACTAGGGCGGCTTGAGCCCCAGCGCCGCCGCCATGGACGAGGAAGCGAAGCCGAACCCTAACGCCGACGCGGCGCCTGCTGCAGCGGAGGCAGCAGCGTCTTCTCCGCCGCCGCTTTCGAGCTCGGAGTCGGCGGAGGGGAAGGATAAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGCGGGGGATTTGGTGGAGAAGCTGGTGGAGTTGGTGGAAGAGATCGCCGCCATCTCGGACTTCAGGAATGCATACCGGCGGCAGTTCTGCAACCTGTCGCGGCGGATCCGGCTGCTCGCGCCCATGCTGGAGGAGGCCAAGGAGGGGCCGCGGCCGCTGCCGGATGTGTCGTATTCCGCTCTCCGGCGGCTCAGGGAGGCGCTCGCTGACTCCAGGGAGCTCCTCCGGCTCGGCGTCAGCGGTAGCAAGATCTCCCTGGTGCGTTTCTCGCTTGAGGCTCGTTGTTTTGTTGCCATATTTGGTCGTTAAAAGATTACATTTCTTCTGCTTATGGCCTTTCGAGTTTATTTAGGATTTAATAGGAGAATTTGCCTCAAGAATTGGAGCGGATTTTAGTGCGTTCATACTCCAAACTTCGTATTAGCACTTCCAATTGTCCCCTGTGATATGACCATTTTAGATAACTCTTTGACATGATCTACTGTATCTCTACATTTTTAAAATATTTTGTTGTTT] [+] EMBL AK109303 [TACACTTCTCCAAATCCCCCCACGGCGCATCGCCCGCTCGCCCTCGCCGCCACCACCACCCGCCTCCGGCCACCGCACACTAGGGCGGCTTGAGCCCCAGCGCCGCCGCCATGGACGAGGAAGCGAAGCCGAACCCTAACGCCGACGCGGCGCCTGCTGCAGCGGAGGCAGCAGCGTCTTCTCCGCCGCCGCTTTCGAGCTCGGAGTCGGCGGAGGGGAAGGATAAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGCGGGGGATTTGGTGGAGAAGCTGGTGGAGTTGGTGGAAGAGATCGCCGCCATCTCGGACTTCAGGAATGCATACCGGCGGCAGTTCTGCAACCTGTCGCGGCGGATCCGGCTGCTCGCGCCCATGCTGGAGGAGGCCAAGGAGGGGCCGCGGCCGCTGCCGGATGTGTCGTATTCCGCTCTCCGGCGGCTCAGGGAGGCGCTCGCTGACTCCAGGGAGCTCCTCCGGCTCGGCGTCAGCGGTAGCAAGATCTCCCTGGTGCGTTTCTCGCTTGAGGCTCGTTGTTTTGTTGCCATATTTGGTCGTTAAAAGATTACATTTCTTCTGCTTATGGCCTTTCGAGTTTATTTAGGATTTAATAGGAGAATTTGCCTCAAGAATTGGAGCGGATTTTAGTGCGTTCATACTCCAAACTTCGTATTAGCACTTCCAATTGTCCCCTGTGATATGACCATTTTAGATAACTCTTTGACATGATCTACTGTATCTCTACATTTTTAAAATATTTTGTTGTTT] [+] EMBL CB636818 [ CCGGCCACCGCACACTAGGGCGGCTTGAGCCCCAGCGCCGCCGCCATGGACGAGGAAGCGAAGCCGAACCCTAACGCCGACGCGGCGCCTGCTGCAGCGGAGGCAGCAGCGTCTTCTCCGCCGCCGCTTTCGAGCTCGGAGTCGGCGGAGGGGAAGGATAAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6217#0 ACCTCGTCTACACTTCTCCAAATCCCCCCACGGCGCATCGCCCGCTCGCCCTCGCCGCCA 60 consensus_6217#1 --------TACACTTCTCCAAATCCCCCCACGGCGCATCGCCCGCTCGCCCTCGCCGCCA 52 **************************************************** consensus_6217#0 CCACCACCCGCCTCCGGCCACCGCACACTAGGGCGGCTTGAGCCCCAGCGCCGCCGCCAT 120 consensus_6217#1 CCACCACCCGCCTCCGGCCACCGCACACTAGGGCGGCTTGAGCCCCAGCGCCGCCGCCAT 112 ************************************************************ consensus_6217#0 GGACGAGGAAGCGAAGCCGAACCCTAACGCCGACGCGGCGCCTGCTGCAGCGGAGGCAGC 180 consensus_6217#1 GGACGAGGAAGCGAAGCCGAACCCTAACGCCGACGCGGCGCCTGCTGCAGCGGAGGCAGC 172 ************************************************************ consensus_6217#0 AGCGTCTTCTCCGCCGCCGCTTTCGAGCTCGGAGTCGGCGGAGGGGAAGGATAAGGAGGA 240 consensus_6217#1 AGCGTCTTCTCCGCCGCCGCTTTCGAGCTCGGAGTCGGCGGAGGGGAAGGATAAGGAGGA 232 ************************************************************ consensus_6217#0 GGAGAAGGAGGAGGAGGAGGAGGAGGAGGCGGGGGATTTGGTGGAGAAGCTGGTGGAGTT 300 consensus_6217#1 GGAGAAGGAGGAGGAGGAGGAGGAGGAGGCGGGGGATTTGGTGGAGAAGCTGGTGGAGTT 292 ************************************************************ consensus_6217#0 GGTGGAAGAGATCGCCGCCATCTCGGACTTCAGGAATGCATACCGGCGGCAGTTCTGCAA 360 consensus_6217#1 GGTGGAAGAGATCGCCGCCATCTCGGACTTCAGGAATGCATACCGGCGGCAGTTCTGCAA 352 ************************************************************ consensus_6217#0 CCTGTCGCGGCGGATCCGGCTGCTCGCGCCCATGCTGGAGGAGGCCAAGGAGGGGCCGCG 420 consensus_6217#1 CCTGTCGCGGCGGATCCGGCTGCTCGCGCCCATGCTGGAGGAGGCCAAGGAGGGGCCGCG 412 ************************************************************ consensus_6217#0 GCCGCTGCCGGATGTGTCGTATTCCGCTCTCCGGCGGCTCAGGGAGGCGCTCGCTGACTC 480 consensus_6217#1 GCCGCTGCCGGATGTGTCGTATTCCGCTCTCCGGCGGCTCAGGGAGGCGCTCGCTGACTC 472 ************************************************************ consensus_6217#0 CAGGGAGCTCCTCCGGCTCGGCGTCAGCGGTAGCAAGATCTCCCTGGTTC-TTGAGAGAG 539 consensus_6217#1 CAGGGAGCTCCTCCGGCTCGGCGTCAGCGGTAGCAAGATCTCCCTGGTGCGTTTCTCGCT 532 ************************************************ * ** * consensus_6217#0 AGAAAATAATGAAGTCTTTCCAGGATATTACTGCAAGGCTTGAACAAGCCTTAGGTTTAA 599 consensus_6217#1 TGAGGCTCGTTGTTTTGTTGCCATATTTGGTCGTTAAAAGATTACATTTCTTCTGCTTAT 592 ** * * * ** * ** * * * *** *** * *** consensus_6217#0 TCTCATTTGA-TGAACTT--GACATATCAGATGAAGTAAGAGAACAGGTTGAATTGGTAC 656 consensus_6217#1 GGCCTTTCGAGTTTATTTAGGATTTAATAGGAGAATTTGCCTCAAGAATTGGAGCGGATT 652 * ** ** * * ** ** ** ** *** * * *** * ** consensus_6217#0 ATGCTCAGTTCAAAAGAGCTAAAGAACGATCTGATCCATCTGATGATGATCTCTTTAATG 716 consensus_6217#1 TTAGTGCGTTCATACT--CCAAACTTCGTATTAGCACTTCCAAT-----TGTCCCCTGTG 705 * * ***** * * *** ** * * ** ** * ** ** consensus_6217#0 ATTTGGTGTCCGTCTACAACTCAAGCACCAGTGCTAATGTTGACCCAGATATTCTCCAGA 776 consensus_6217#1 ATATGACCATTTTAGATAACTCTTTGACATGATCTACTGT--ATCTCTACATTTTTAAAA 763 ** ** * * ***** ** * *** *** * * * *** * * * consensus_6217#0 GGTTATCTGACAAGTTGCAGCTTGCCACTATATCAGACCTCAATCAAGAATCATTGATCT 836 consensus_6217#1 TATTTTGTTGTTT----------------------------------------------- 776 ** * * consensus_6217#0 TGCACGAGATGGCTAGTGGCGGTGATCCTGGTGCCGTTGTTGAGAAGATGTCAATGCTGC 896 consensus_6217#1 ------------------------------------------------------------ consensus_6217#0 TAAAAAGAATCAAGGATTTTGTGCAGAGTCGAGATCCTGAAATGGGAACCCCAGTAAATA 956 consensus_6217#1 ------------------------------------------------------------ consensus_6217#0 CGACAGAACTTTCGGGAAAAGACAACATGGCATCTCTGATTGTTCCGGATGATTTCCGTT 1016 consensus_6217#1 ------------------------------------------------------------ consensus_6217#0 GCCCCATATCGCTGGATTTAATGAAAGATCCAGTTATTGTTGCCACTGGACAGACTTATG 1076 consensus_6217#1 ------------------------------------------------------------ consensus_6217#0 AGCGAGGATGCATAGAGAGATGGTTGGAGGCTGGGCATGACACCTGTCCAAAGACACAGC 1136 consensus_6217#1 ------------------------------------------------------------ consensus_6217#0 AGAAGCTTCCCAATAAATCTCTAACCCCAAATTATGTCTTACGCAGCCTTATAGCTCAAT 1196 consensus_6217#1 ------------------------------------------------------------ consensus_6217#0 GGTGTGAAGCAAATGGTATGGAGCCACCAAAACGTGCTGCTCAACATCATAATGCACCAG 1256 consensus_6217#1 ------------------------------------------------------------ consensus_6217#0 CATCATGTACCGCTGCTGAACATAGCAACGTCGTTGAGCTTCTTCAGAAATTATTGTCAC 1316 consensus_6217#1 ------------------------------------------------------------ consensus_6217#0 AAAACCTAGAAGACCAGCGTGAGGCTGCAGGTATGCTTCGTCAGCTTGCCAAGCGCAGTC 1376 consensus_6217#1 ------------------------------------------------------------ consensus_6217#0 CTGAAAATCGTGCTTGTATAGGAGATGCTGGTGCTATTCCTATTCTTGTTAGCCTGCTAT 1436 consensus_6217#1 ------------------------------------------------------------ consensus_6217#0 CTATAACTGATGTTAGCACTCAAGAGCATGTAGTTACTGCTCTCTTGAATCTTTCGATAT 1496 consensus_6217#1 ------------------------------------------------------------ consensus_6217#0 ATGAAGAGAACAAGGCAAGAATAATCACCTCTGGAGCTGTTCCTGGAGTAGTTCATGTGT 1556 consensus_6217#1 ------------------------------------------------------------ consensus_6217#0 TGAAGAGGGGAAGCATGGAGGCTCGGGAGAATTCAGCTGCCACACTGTTCAGTCTT 1612 consensus_6217#1 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||