cluster # 623

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Oryza sativa
cluster # 623 cluster # 623 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_623#0 length = 590 sequences # 1

consensus_623#1 length = 377 sequences # 1

consensusID : consensus_623#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 590
fasta sequence

                              [TCCCCCAAATTTGATACGCGCCGGCGGCGGCGACGACGGGGGCTGCGGCGGCGGCGGCGGCTCTTCTTCTCCGCCCTATCCCGTTCTCGGAGATGGGCTAGGGACGGGATGGGATGGGATGGCGTCTCCTGCTGCGCTCGCCGGAGATGGCTCCGCCTCGCCGAGCAGGAGTTAGTTGATGGATATATAATGCCTTGATCAAATCTTTGAGTACCTACTTCCTAGGAGCTTTGGAGATCTGCAGCGAATTCATACTTTTAACAAATACTCCCTCCCGTCTCAAATAGCTGTCACTGTTAACCAGTATAATTTTAGCTTTGATTATCAGTAAGTTTTGAATGGTTTTATAATGATGGATGGAAGTTTCATGATTATATTTAGGATACATCACACGTCTATAATATAGAATGCTCTTAAGTATTTATACATCTTCTTCCAATAAGAAGAGCTGTCAAAGTTTAAAGATGAACAGTACCCTGTGATAGGTATTTGAGGACAGATGGAGTATGCATGCTTTCATTTTATTTTCCCTAACTGCTAATACTTGTATGTATATGTTGATAACCTTCACACTCAATCATTTTGAACTG]

[+] EMBL CA765350             [TCCCCCAAATTTGATACGCGCCGGCGGCGGCGACGACGGGGGCTGCGGCGGCGGCGGCGGCTCTTCTTCTCCGCCCTATCCCGTTCTCGGAGATGGGCTAGGGACGGGATGGGATGGGATGGCGTCTCCTGCTGCGCTCGCCGGAGATGGCTCCGCCTCGCCGAGCAGGAGTTAGTTGATGGATATATAATGCCTTGATCAAATCTTTGAGTACCTACTTCCTAGGAGCTTTGGAGATCTGCAGCGAATTCATACTTTTAACAAATACTCCCTCCCGTCTCAAATAGCTGTCACTGTTAACCAGTATAATTTTAGCTTTGATTATCAGTAAGTTTTGAATGGTTTTATAATGATGGATGGAAGTTTCATGATTATATTTAGGATACATCACACGTCTATAATATAGAATGCTCTTAAGTATTTATACATCTTCTTCCAATAAGAAGAGCTGTCAAAGTTTAAAGATGAACAGTACCCTGTGATAGGTATTTGAGGACAGATGGAGTATGCATGCTTTCATTTTATTTTCCCTAACTGCTAATACTTGTATGTATATGTTGATAACCTTCACACTCAATCATTTTGAACTG]




>consensus_623#0
TCCCCCAAATTTGATACGCGCCGGCGGCGGCGACGACGGGGGCTGCGGCGGCGGCGGCGG
CTCTTCTTCTCCGCCCTATCCCGTTCTCGGAGATGGGCTAGGGACGGGATGGGATGGGAT
GGCGTCTCCTGCTGCGCTCGCCGGAGATGGCTCCGCCTCGCCGAGCAGGAGTTAGTTGAT
GGATATATAATGCCTTGATCAAATCTTTGAGTACCTACTTCCTAGGAGCTTTGGAGATCT
GCAGCGAATTCATACTTTTAACAAATACTCCCTCCCGTCTCAAATAGCTGTCACTGTTAA
CCAGTATAATTTTAGCTTTGATTATCAGTAAGTTTTGAATGGTTTTATAATGATGGATGG
AAGTTTCATGATTATATTTAGGATACATCACACGTCTATAATATAGAATGCTCTTAAGTA
TTTATACATCTTCTTCCAATAAGAAGAGCTGTCAAAGTTTAAAGATGAACAGTACCCTGT
GATAGGTATTTGAGGACAGATGGAGTATGCATGCTTTCATTTTATTTTCCCTAACTGCTA
ATACTTGTATGTATATGTTGATAACCTTCACACTCAATCATTTTGAACTG

consensusID : consensus_623#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 377
fasta sequence

                              [CTCCATGGCCAACGCCCAACGGAAACAAATCCCCCAAATTTGATACGCGCCGGCGGCGGCGACGACGGGGGCTGCGGCGGCGGCGGCGGCTCTTCTTCTCCGCCCTATCCCGTTCTCGGAGATGGGCTAGGGACGGGATGGGATGGGATGGCGTCTCCTGCTGCGCTCGCCGGAGATGGCTCCGCCTCGCCGAGCAGCAAACAGTTATCCAAGGTTGTTTTGGAGTGAAGGCAGATAACCACCTAGGTCACAAAAACAGATGGTATGGAGAGAGTTCTACAAAGTGACATACATCGTAACAATTTCTACCAATATGGCACAGGGTGGCGAATCCTATTTAGACAGCCTCAGAAGCTTGCTTCAGATGATGTAAAGTC]

[+] EMBL CB638794             [CTCCATGGCCAACGCCCAACGGAAACAAATCCCCCAAATTTGATACGCGCCGGCGGCGGCGACGACGGGGGCTGCGGCGGCGGCGGCGGCTCTTCTTCTCCGCCCTATCCCGTTCTCGGAGATGGGCTAGGGACGGGATGGGATGGGATGGCGTCTCCTGCTGCGCTCGCCGGAGATGGCTCCGCCTCGCCGAGCAGCAAACAGTTATCCAAGGTTGTTTTGGAGTGAAGGCAGATAACCACCTAGGTCACAAAAACAGATGGTATGGAGAGAGTTCTACAAAGTGACATACATCGTAACAATTTCTACCAATATGGCACAGGGTGGCGAATCCTATTTAGACAGCCTCAGAAGCTTGCTTCAGATGATGTAAAGTC]




>consensus_623#1
CTCCATGGCCAACGCCCAACGGAAACAAATCCCCCAAATTTGATACGCGCCGGCGGCGGC
GACGACGGGGGCTGCGGCGGCGGCGGCGGCTCTTCTTCTCCGCCCTATCCCGTTCTCGGA
GATGGGCTAGGGACGGGATGGGATGGGATGGCGTCTCCTGCTGCGCTCGCCGGAGATGGC
TCCGCCTCGCCGAGCAGCAAACAGTTATCCAAGGTTGTTTTGGAGTGAAGGCAGATAACC
ACCTAGGTCACAAAAACAGATGGTATGGAGAGAGTTCTACAAAGTGACATACATCGTAAC
AATTTCTACCAATATGGCACAGGGTGGCGAATCCTATTTAGACAGCCTCAGAAGCTTGCT
TCAGATGATGTAAAGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_623#0      -----------------------------TCCCCCAAATTTGATACGCGCCGGCGGCGGC 31
consensus_623#1      CTCCATGGCCAACGCCCAACGGAAACAAATCCCCCAAATTTGATACGCGCCGGCGGCGGC 60
                                                  *******************************

consensus_623#0      GACGACGGGGGCTGCGGCGGCGGCGGCGGCTCTTCTTCTCCGCCCTATCCCGTTCTCGGA 91
consensus_623#1      GACGACGGGGGCTGCGGCGGCGGCGGCGGCTCTTCTTCTCCGCCCTATCCCGTTCTCGGA 120
                     ************************************************************

consensus_623#0      GATGGGCTAGGGACGGGATGGGATGGGATGGCGTCTCCTGCTGCGCTCGCCGGAGATGGC 151
consensus_623#1      GATGGGCTAGGGACGGGATGGGATGGGATGGCGTCTCCTGCTGCGCTCGCCGGAGATGGC 180
                     ************************************************************

consensus_623#0      TCCGCCTCGCCGAGCAGGAGTTAGTTGATGGATAT-ATAATGCCTTGATCAAATCTTTGA 210
consensus_623#1      TCCGCCTCGCCGAGCAGCAAACAGTTATCCAAGGTTGTTTTGGAGTGA--AGGCAGATAA 238
                     ***************** *   ****     *  *  *  **   ***  *      * *

consensus_623#0      GTACCTACTTCCTAGGAGCTTTGGAGATCTGCAGCGAATTCATACTTTTAACAAATACTC 270
consensus_623#1      CCACCTAGGTCACAAAAACA--GATGGTATGGAGAGAGTTCTACAAAGTGACATACA-TC 295
                       *****  **  *  * *   *  * * ** ** ** ***       * *** * * **

consensus_623#0      CCTCCCGTCTCAAATAGC-TGTCACTGT-TAACCAGTATAATTTTAGCTTTGATTATCAG 328
consensus_623#1      GTAACAATTTCTACCAATATGGCACAGGGTGGCGAATCCTATTT-AGACAGCCTCAGAAG 354
                         *  * ** *  *   ** *** *  *  * * *   **** **      * *  **

consensus_623#0      TAAGTTTTGAATGGTTTTATAATGATGGATGGAAGTTTCATGATTATATTTAGGATACAT 388
consensus_623#1      CTTGCTTCAGATGATGTAAAGTC------------------------------------- 377
                        * **   *** * * *                                         

consensus_623#0      CACACGTCTATAATATAGAATGCTCTTAAGTATTTATACATCTTCTTCCAATAAGAAGAG 448
consensus_623#1      ------------------------------------------------------------
                                                                                 

consensus_623#0      CTGTCAAAGTTTAAAGATGAACAGTACCCTGTGATAGGTATTTGAGGACAGATGGAGTAT 508
consensus_623#1      ------------------------------------------------------------
                                                                                 

consensus_623#0      GCATGCTTTCATTTTATTTTCCCTAACTGCTAATACTTGTATGTATATGTTGATAACCTT 568
consensus_623#1      ------------------------------------------------------------
                                                                                 

consensus_623#0      CACACTCAATCATTTTGAACTG 590
consensus_623#1      ----------------------