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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6230#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 674 fasta sequence
[CCCCAACTTCACGGTGGCGCTCGCGGCGGCGATCACGTCCATCATAGGCGGCCAGCACGCGGCGGCAGCTGGCAACAGCAACGCGAACAACACCAACACCAACACCACGAGCAACACCAACAACACAAGCAGCAACAACACGACGAGCAACAACACCAACAGCGAGACGCAGTAAAAACGAGTTCGGATCAGTAATTTTCACATAGATTTCCAAGTTTTTACTCTTCTTTGTTCAGGATAGGTTCTTGATTTCTCTCCTTTGGTTTCGATAGCTCGGCCGAGCTGTGCAGTGGGCACATGGTATACACTTTCTTTTTTCTTCTCCACTTTCCTGGTTTTGCAGCAGCAAAAAGTTGTATTAATTCATTGCTTTTTCTTAGTTCTTTTTCTACCGCANAAACAGCTGTTGATACTTCGCAGTAAGTAATAATCAGTACAATAATAAGTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]
[+] EMBL CF303295 [CCCCAACTTCACGGTGGCGCTCGCGGCGGCGATCACGTCCATCATAGGCGGCCAGCACGCGGCGGCAGCTGGCAACAGCAACGCGAACAACACCAACACCAACACCACGAGCAACACCAACAACACAAGCAGCAACAACACGACGAGCAACAACACCAACAGCGAGACGCAGTAAAAACGAGTTCGGATCAGTAATTTTCACATAGATTTCCAAGTTTTTA ]
[+] EMBL CA756133 [ AGCTGGCAACAGCAACGCGAACAACACCAACACCAACACCACGAGCAACACCAACAACACAAGCAGCAACAACACGACGAGCAACAACACCAACAGCGAGACGCAGTAAAAACGAGTTCGGATCAGTAATTTTCACATAGATTTCCAAGTTTTTACTCTTCTTTGTTCAGGATAGGTTCTTGATTTCTCTCCTTTGGTTTCGATAGCTCGGCCGAGCTGTGCAGTGGGCACATGGTATACACTTTCTTTTTTCTTCTCCACTTTCCTGGTTTTGCAGCAGCAAAAAGTTGTATTAATTCATTGCTTTTTCTTAGTTCTTTTTCTACCGCANAAACAGCTGTTGATACTTCGCAGTAAGTAATAATCAGTACAATAATAAGTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]
consensusID : consensus_6230#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 565 fasta sequence
[CGATCACCGCTGACCCCTACGTTCTACGGTGGCGCTCGCGGCGGCGATCACGTCCATCATAGGCGGCCAGCACGCGGCGGCAGCTGGCAACAGCAACGCGAACAACACCTAACACCAACACCACGAGCAACACCAACAACACAACAGCAACAACACGACGAGCAACAACAC-CACAGCGAGACNCAGTAAAAACGAGTTCGGATCAGTAATTTTCACATAGATTTCCAAGTTTTTACTCTTCTTTGTTCAGGATAGGTTCTTGATTTCTCTCCTTTGGTTTCGATAGCTCGGCCGAGCTGTGCAGTGGGCACATGGTATACACTTTCTTTTTTCTTCTCCACTTTCCTGGTTTTGCAGCAGCAAAAAGTTGTATTAATTCATTGCTTTTTCTTAGTTCTTTTTCTACCGC-AAAACAGCTGTTGATACTTCGCAGTAAGTAATAATCAGTACAATAATAAGTATAATAAAAAAAACTTCCTGAGAATTATGTACACTTGTCAAAGCAACAAAACAAAAGAAACAATGACAGCTTACTAGATCCCTCTTTTNTAAAAAAAAAAAAAAA]
[+] EMBL BQ907265 [CGATCACCGCTGACCCCTACGTTCTACGGTGGCGCTCGCGGCGGCGATCACGTCCATCATAGGCGGCCAGCACGCGGCGGCAGCTGGCAACAGCAACGCGAACAACACCTAACACCAACACCACGAGCAACACCAACAACACAACAGCAACAACACGACGAGCAACAACAC CACAGCGAGACNCAGTAAAAACGAGTTCGGATCAGTAATTTTCACATAGATTTCCAAGTTTTTACTCTTCTTTGTTCAGGATAGGTTCTTGATTTCTCTCCTTTGGTTTCGATAGCTCGGCCGAGCTGTGCAGTGGGCACATGGTATACACTTTCTTTTTTCTTCTCCACTTTCCTGGTTTTGCAGCAGCAAAAAGTTGTATTAATTCATTGCTTTTTCTTAGTTCTTTTTCTACCGC AAAACAGCTGTTGATACTTCGCAGTAAGTAATAATCAGTACAATAATAAGTATAATAAAAAAAA ]
[+] EMBL AU166480 [ AGCAACAACNCGGCGAGCAACAACACNAACAGCGAGACGCAGTAAAAACGAGTTCGGATCAGTAATTTTCACATAGATTTCCAAGTTTTTACTCTTCTTTGTTCAGGATAGGTTCTTGATTTCTCTCCTTTGGTTTCGATAGCTCGGCCGAGCTGTGCAGTGGGCACATGGTATACACTTTCTTTTTTCTTCTCCACTTTCCTGGTTTTGCAGCAGCAAAAAGTTGTATTAATTCATTGCTTTTTCTTAGTTCTTTTTCTACCGCAAAAACAGCTGTTGATACTTCGCAGTAAGTAATAATCAGTACAATAATAAGTATAATAATAGCATCTTCCTGAGAATTATGTACACTTGTCAAAGCAACAAAACAAAAGAAACAATGACAGCTTACTAGATCCCTCTTTTNTAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6230#0 -------------CCCCAAC--TTCACGGTGGCGCTCGCGGCGGCGATCACGTCCATCAT 45
consensus_6230#1 CGATCACCGCTGACCCCTACGTTCTACGGTGGCGCTCGCGGCGGCGATCACGTCCATCAT 60
**** ** * ***********************************
consensus_6230#0 AGGCGGCCAGCACGCGGCGGCAGCTGGCAACAGCAACGCGAACAACACC-AACACCAACA 104
consensus_6230#1 AGGCGGCCAGCACGCGGCGGCAGCTGGCAACAGCAACGCGAACAACACCTAACACCAACA 120
************************************************* **********
consensus_6230#0 CCACGAGCAACACCAACAACACAAGCAGCAACAACACGACGAGCAACAACACCAACAGCG 164
consensus_6230#1 CCACGAGCAACACCAACAACACAA-CAGCAACAACACGACGAGCAACAACACCA-CAGCG 178
************************ ***************************** *****
consensus_6230#0 AGACGCAGTAAAAACGAGTTCGGATCAGTAATTTTCACATAGATTTCCAAGTTTTTACTC 224
consensus_6230#1 AGACNCAGTAAAAACGAGTTCGGATCAGTAATTTTCACATAGATTTCCAAGTTTTTACTC 238
**** *******************************************************
consensus_6230#0 TTCTTTGTTCAGGATAGGTTCTTGATTTCTCTCCTTTGGTTTCGATAGCTCGGCCGAGCT 284
consensus_6230#1 TTCTTTGTTCAGGATAGGTTCTTGATTTCTCTCCTTTGGTTTCGATAGCTCGGCCGAGCT 298
************************************************************
consensus_6230#0 GTGCAGTGGGCACATGGTATACACTTTCTTTTTTCTTCTCCACTTTCCTGGTTTTGCAGC 344
consensus_6230#1 GTGCAGTGGGCACATGGTATACACTTTCTTTTTTCTTCTCCACTTTCCTGGTTTTGCAGC 358
************************************************************
consensus_6230#0 AGCAAAAAGTTGTATTAATTCATTGCTTTTTCTTAGTTCTTTTTCTACCGCANAAACAGC 404
consensus_6230#1 AGCAAAAAGTTGTATTAATTCATTGCTTTTTCTTAGTTCTTTTTCTACCGCAAAA-CAGC 417
**************************************************** ** ****
consensus_6230#0 TGTTGATACTTCGCAGTAAGTAATAATCAGTACAATAATAAGTAAANNNNNNNNNNNNNN 464
consensus_6230#1 TGTTGATACTTCGCAGTAAGTAATAATCAGTACAATAATAAGTATAATAAAAAAAACTTC 477
******************************************** *
consensus_6230#0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 524
consensus_6230#1 CTGAGAATTATGTACACTTGTCAAAGCAACAAAACAAAAGAAACAATGACAGCTTACTAG 537
consensus_6230#0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 584
consensus_6230#1 ATCCCTCTTTTNTAAAAAAAAAAAAAAA-------------------------------- 565
*
consensus_6230#0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 644
consensus_6230#1 ------------------------------------------------------------
consensus_6230#0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 674
consensus_6230#1 ------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||