|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6235#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1677 fasta sequence
[TAGATCTCCTGGTAGGAATATTTATCATGGTTTGCATATATATTTTTATCTCATATTATCCCTATCTTGCAACTAAATCTTCATTCTATATCTACTGGAGGTTCATGGCAATTGACATGTTTGATACTGATGAGTATTATGATAGTTATTGGGGAATGATGGGCATGACAATGATAGTAGAGATAACATGCTGGATGCCGCAGACCCAAGAATGGTAGTAACTGCGTTGCCATCTAATCCAATAATATATTTATTTGCTGTTTGGTGTTCTAAATCAGCTCATGAAGAACACAGCAGATTCTAACAGTTCGAATTTCCCATATAAAACTATACCTTCCATAAGAAGTGTCACAATTTGCTAAGTTTCGTTTTGATTTTCCATGGTAATTAGGTATTTCATTTATTGTAACACCCCAGCCTCTGTATTGTTCCCTGTCTCTTCCATGGGGTCAGGTTCACATGCGGATAGCACTCGAGTACTCGACTTTCTCTTTTGTCCTTTCTTCATGTGAAAAAAGTTGTTAACCCAGAAGTGCTATTGTTGGAGGCTTGCAGCACTCTCCGTATGGCACTAATCCCATCATGTAGCACATAAGTTTTCACTCTAATGGGCGATGATACTACATGTTAATGAAAGTGTTTACCCTTCAACTCTTTCTAGAGTAGCAATCATTTTCACTAGGTATTAGATGCACATGCTTTTAAAGATGCACACTACTATGTTGTATATGTATTCTATTGTTCTATTATGTTTCAGGGTAATGATGGAGCTAGACGAGCAAACTCTTTCCACCACTTGGGCTGTCTACTCCTTGCTGAGCATAATATTATATCTGAAGCATTCCTTACTGCGTCATCCTGGTCTAGATGTGTCATCATGATTCAGCGATACAAGGAAGTTCTTGTATACTCAGTCCTCTTAGCAAAATTTGAACCCAGCCAGAGTGGGAAAGCAAATACACACATTATGCATGGTGCCTCACACGTCTATTTTCTAATAGACAGTTTGTGAAGAATGTTCATGATGTGGCGAAGACATGGGAAGGGCAGCTCAAAAGGAGAGCAGAAGAGTCTCATGCAATCCAAATGCCTGATAAATACTCAGTTCCTTCAATGTGTACATGCCCTCTGGAATCGAGATATTACTTATGATCTATCAAAAAAGTTTGCAAAAGCTAAAAGACTTGGGATGAGGAGGAAGGTTTCCAAGAAATTGAGATGAGACAATGGCTACAGGATATCCGAGAGATTGGAAAATGTATTAAATTGCAGCAGGCGCACAAGGGCAAGATTTGTACATGGAATTGGGAGTTTGAAGATGAATTTGAAGATATCTTCCAGTTTATTTTGAGATGATGCAAGAAGTGGATACAATGGTTGGGTGTTTTGAGGTTGATTTTTTTGGACCGGGAAGTTCTATATAAGAAATTGAGGCCTGAATTTAGATCCATGTATGCCATTGACAGTAGCAAGTACCCTCATCTAAGGATCATCTCAAATATGTGAGAAGTATGCACTTGCTATGATTTCTAATAATCAGCTTGTAGGGTTCCCCGTAAGGAAAAAAGAGTACAACAACTATTTTACATTTTAGCATCAATTACTTCGGATCGACTATTTTACCCCTATTTTGATCTTCAATTTTGATTTTGCCCCTGTATTTTTTTAAAAAAAAAA]
[+] EMBL AK100272 [TAGATCTCCTGGTAGGAATATTTATCATGGTTTGCATATATATTTTTATCTCATATTATCCCTATCTTGCAACTAAATCTTCATTCTATATCTACTGGAGGTTCATGGCAATTGACATGTTTGATACTGATGAGTATTATGATAGTTATTGGGGAATGATGGGCATGACAATGATAGTAGAGATAACATGCTGGATGCCGCAGACCCAAGAATGGTAGTAACTGCGTTGCCATCTAATCCAATAATATATTTATTTGCTGTTTGGTGTTCTAAATCAGCTCATGAAGAACACAGCAGATTCTAACAGTTCGAATTTCCCATATAAAACTATACCTTCCATAAGAAGTGTCACAATTTGCTAAGTTTCGTTTTGATTTTCCATGGTAATTAGGTATTTCATTTATTGTAACACCCCAGCCTCTGTATTGTTCCCTGTCTCTTCCATGGGGTCAGGTTCACATGCGGATAGCACTCGAGTACTCGACTTTCTCTTTTGTCCTTTCTTCATGTGAAAAAAGTTGTTAACCCAGAAGTGCTATTGTTGGAGGCTTGCAGCACTCTCCGTATGGCACTAATCCCATCATGTAGCACATAAGTTTTCACTCTAATGGGCGATGATACTACATGTTAATGAAAGTGTTTACCCTTCAACTCTTTCTAGAGTAGCAATCATTTTCACTAGGTATTAGATGCACATGCTTTTAAAGATGCACACTACTATGTTGTATATGTATTCTATTGTTCTATTATGTTTCAGGGTAATGATGGAGCTAGACGAGCAAACTCTTTCCACCACTTGGGCTGTCTACTCCTTGCTGAGCATAATATTATATCTGAAGCATTCCTTACTGCGTCATCCTGGTCTAGATGTGTCATCATGATTCAGCGATACAAGGAAGTTCTTGTATACTCAGTCCTCTTAGCAAAATTTGAACCCAGCCAGAGTGGGAAAGCAAATACACACATTATGCATGGTGCCTCACACGTCTATTTTCTAATAGACAGTTTGTGAAGAATGTTCATGATGTGGCGAAGACATGGGAAGGGCAGCTCAAAAGGAGAGCAGAAGAGTCTCATGCAATCCAAATGCCTGATAAATACTCAGTTCCTTCAATGTGTACATGCCCTCTGGAATCGAGATATTACTTATGATCTATCAAAAAAGTTTGCAAAAGCTAAAAGACTTGGGATGAGGAGGAAGGTTTCCAAGAAATTGAGATGAGACAATGGCTACAGGATATCCGAGAGATTGGAAAATGTATTAAATTGCAGCAGGCGCACAAGGGCAAGATTTGTACATGGAATTGGGAGTTTGAAGATGAATTTGAAGATATCTTCCAGTTTATTTTGAGATGATGCAAGAAGTGGATACAATGGTTGGGTGTTTTGAGGTTGATTTTTTTGGACCGGGAAGTTCTATATAAGAAATTGAGGCCTGAATTTAGATCCATGTATGCCATTGACAGTAGCAAGTACCCTCATCTAAGGATCATCTCAAATATGTGAGAAGTATGCACTTGCTATGATTTCTAATAATCAGCTTGTAGGGTTCCCCGTAAGGAAAAAAGAGTACAACAACTATTTTACATTTTAGCATCAATTACTTCGGATCGACTATTTTACCCCTATTTTGATCTTCAATTTTGATT ]
[+] EMBL AU166486 [ TACAGGATATCCGAGAGATTGGAAAATGTATTAAATTGCAGCAGGCGCACAAGGGCAAGATTTGTACATGGAATTGGGAGTTTGAAGATGAATTTGAAGATATCTTCCAGTTTATTTTGAGATGATGCAAGAAGTGGATACAATGGTTGGGTGTTTTGAGGTTGATTTTTTTGGACCGGGAAGTTCTATATAAGAAATTGAGGCCTGAATTTAGATCCATGTATGCCATTGACAGTAGCAAGTACCCTCATCTAAGGATCATCTCAAATATGTGAGAAGTATGCACTTGCTATGATTTCTAATAATCAGCTTGTAGGGTTCCCCGTAAGGAAAAAAGAGTACAACAACTATTTTACATTTTAGCATCAATTACTTCGGATCGACTATTTTACCCCTATTTTGATCTTCAATTTTGATTTTGCCCCTGTATTTTTTTAAAAAAAAAA]
consensusID : consensus_6235#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 652 fasta sequence
[AAAAGGAGAGCAGAAGGGTCTCATGCAATCCAAATGCCTGATAAATGCTCGGGTAGTCTATTAGGGTTGATCCCCCCATTGCTCCTAAGGTTCCTTCAACGTGTTCATGCCCTCGGGAGTCGAGATATTACTTATGATCTATCGACAAAGTGTGCAATAGCTAAAAGCCTTGGGATCGATGAGGAGGAAGGTTTCCAAGAAAGTATGATGAGTCAATGGGCACAGGCTATCCGATAGATTGGAAAATGTATTAAATTGCAGCTGGCGCACAAGGGCAAGTTTCGTACACGGAACTGGGAGTTTGAAGATGAATGGGAAGATATCTTGCAGCATATTCTCAGTTGATGCCAGAAGTGGATACAACGTAAGGGTGGTATGAGTTTGATTTTCTTGGACCAGGAAGTCCTTTCTAAGAAATTCAGGCCTCAAATTAAATTCCCGTTTCCCGTCGCCGGTAACTAGTCTCCTTCATTTACAGGATCCTCTCCAACATATGTCAGAATGTATAGCGTCCTAGCTATGATTTTTTAATATTCTAGGGTGTAGGGTTTTTCCGTAAGGAAAAAAAGAGACTAACAACTATTTTGCTCTTTAGCATCAAATATCTTCGGATCGGATATTTTTCCCCTCTTCTGATTTTCAAAAAAAAAAA]
[-] EMBL CA761130 [AAAAGGAGAGCAGAAGGGTCTCATGCAATCCAAATGCCTGATAAATGCTCGGGTAGTCTATTAGGGTTGATCCCCCCATTGCTCCTAAGGTTCCTTCAACGTGTTCATGCCCTCGGGAGTCGAGATATTACTTATGATCTATCGACAAAGTGTGCAATAGCTAAAAGCCTTGGGATCGATGAGGAGGAAGGTTTCCAAGAAAGTATGATGAGTCAATGGGCACAGGCTATCCGATAGATTGGAAAATGTATTAAATTGCAGCTGGCGCACAAGGGCAAGTTTCGTACACGGAACTGGGAGTTTGAAGATGAATGGGAAGATATCTTGCAGCATATTCTCAGTTGATGCCAGAAGTGGATACAACGTAAGGGTGGTATGAGTTTGATTTTCTTGGACCAGGAAGTCCTTTCTAAGAAATTCAGGCCTCAAATTAAATTCCCGTTTCCCGTCGCCGGTAACTAGTCTCCTTCATTTACAGGATCCTCTCCAACATATGTCAGAATGTATAGCGTCCTAGCTATGATTTTTTAATATTCTAGGGTGTAGGGTTTTTCCGTAAGGAAAAAAAGAGACTAACAACTATTTTGCTCTTTAGCATCAAATATCTTCGGATCGGATATTTTTCCCCTCTTCTGATTTTCAAAAAAAAAAA]
consensusID : consensus_6235#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence
[TCAAAAGGAGAGCAGAAGAGTCTCATGCAATCCAAATGCCTGATAAATACTCGGGTAGTCTCTTAGGGTTGATCCTTCCATTGCTCCTAAGGTTCCTTCAATGTGTACATGCCCTCTGGAATCGAGATATTACTTATGATCTATCAAAAAAGTTTGCAAAAGCTAAAAGACTTGGGATCGATGAGGAGGAAGGTTTCCAAGAAATTGAGATGAGACAATGGCTACAGGATATCCGAGAGATTGGAAAATGTATTAAATTGCAGCAGGCGCACAAGGGCAAGATTTGTACATGGAATTGGGAGTTTGAAGATGAATTTGAAGATATCTTCCAGTTTATTTTGAGATGATGCAAGAAGTGGATACAATGGTTGGGCGTTTTGAGGTTGATTTTTTTGGACCGGGAAGTTCTATATAAGAAATTGAGGCCTGAATTTAGATCCATGTATGCCATTGACAGTAGCAAGTACCCTCATCTAAGGATCATCTCAAATATGTGAGAAGTATGCACTTGCTATGATTTCTAATAATCAGCTTGTAGGGTTCCCCGTAAGGAAAAAGAGTACAACAACTATTTTACATTTTAGCATCAATTGCTTCGGATCGACTATTTTACCCCTATTTTGATCTTCAATTTTGATTT]
[+] EMBL CA765110 [TCAAAAGGAGAGCAGAAGAGTCTCATGCAATCCAAATGCCTGATAAATACTCGGGTAGTCTCTTAGGGTTGATCCTTCCATTGCTCCTAAGGTTCCTTCAATGTGTACATGCCCTCTGGAATCGAGATATTACTTATGATCTATCAAAAAAGTTTGCAAAAGCTAAAAGACTTGGGATCGATGAGGAGGAAGGTTTCCAAGAAATTGAGATGAGACAATGGCTACAGGATATCCGAGAGATTGGAAAATGTATTAAATTGCAGCAGGCGCACAAGGGCAAGATTTGTACATGGAATTGGGAGTTTGAAGATGAATTTGAAGATATCTTCCAGTTTATTTTGAGATGATGCAAGAAGTGGATACAATGGTTGGGCGTTTTGAGGTTGATTTTTTTGGACCGGGAAGTTCTATATAAGAAATTGAGGCCTGAATTTAGATCCATGTATGCCATTGACAGTAGCAAGTACCCTCATCTAAGGATCATCTCAAATATGTGAGAAGTATGCACTTGCTATGATTTCTAATAATCAGCTTGTAGGGTTCCCCGTAAGGAAAAAGAGTACAACAACTATTTTACATTTTAGCATCAATTGCTTCGGATCGACTATTTTACCCCTATTTTGATCTTCAATTTTGATTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6235#0 TAGATCTCCTGGTAGGAATATTTATCATGGTTTGCATATATATTTTTATCTCATATTATC 60
consensus_6235#2 ------------------------------------------------------------
consensus_6235#1 ------------------------------------------------------------
consensus_6235#0 CCTATCTTGCAACTAAATCTTCATTCTATATCTACTGGAGGTTCATGGCAATTGACATGT 120
consensus_6235#2 ------------------------------------------------------------
consensus_6235#1 ------------------------------------------------------------
consensus_6235#0 TTGATACTGATGAGTATTATGATAGTTATTGGGGAATGATGGGCATGACAATGATAGTAG 180
consensus_6235#2 ------------------------------------------------------------
consensus_6235#1 ------------------------------------------------------------
consensus_6235#0 AGATAACATGCTGGATGCCGCAGACCCAAGAATGGTAGTAACTGCGTTGCCATCTAATCC 240
consensus_6235#2 ------------------------------------------------------------
consensus_6235#1 ------------------------------------------------------------
consensus_6235#0 AATAATATATTTATTTGCTGTTTGGTGTTCTAAATCAGCTCATGAAGAACACAGCAGATT 300
consensus_6235#2 ------------------------------------------------------------
consensus_6235#1 ------------------------------------------------------------
consensus_6235#0 CTAACAGTTCGAATTTCCCATATAAAACTATACCTTCCATAAGAAGTGTCACAATTTGCT 360
consensus_6235#2 ------------------------------------------------------------
consensus_6235#1 ------------------------------------------------------------
consensus_6235#0 AAGTTTCGTTTTGATTTTCCATGGTAATTAGGTATTTCATTTATTGTAACACCCCAGCCT 420
consensus_6235#2 ------------------------------------------------------------
consensus_6235#1 ------------------------------------------------------------
consensus_6235#0 CTGTATTGTTCCCTGTCTCTTCCATGGGGTCAGGTTCACATGCGGATAGCACTCGAGTAC 480
consensus_6235#2 ------------------------------------------------------------
consensus_6235#1 ------------------------------------------------------------
consensus_6235#0 TCGACTTTCTCTTTTGTCCTTTCTTCATGTGAAAAAAGTTGTTAACCCAGAAGTGCTATT 540
consensus_6235#2 ------------------------------------------------------------
consensus_6235#1 ------------------------------------------------------------
consensus_6235#0 GTTGGAGGCTTGCAGCACTCTCCGTATGGCACTAATCCCATCATGTAGCACATAAGTTTT 600
consensus_6235#2 ------------------------------------------------------------
consensus_6235#1 ------------------------------------------------------------
consensus_6235#0 CACTCTAATGGGCGATGATACTACATGTTAATGAAAGTGTTTACCCTTCAACTCTTTCTA 660
consensus_6235#2 ------------------------------------------------------------
consensus_6235#1 ------------------------------------------------------------
consensus_6235#0 GAGTAGCAATCATTTTCACTAGGTATTAGATGCACATGCTTTTAAAGATGCACACTACTA 720
consensus_6235#2 ------------------------------------------------------------
consensus_6235#1 ------------------------------------------------------------
consensus_6235#0 TGTTGTATATGTATTCTATTGTTCTATTATGTTTCAGGGTAATGATGGAGCTAGACGAGC 780
consensus_6235#2 ------------------------------------------------------------
consensus_6235#1 ------------------------------------------------------------
consensus_6235#0 AAACTCTTTCCACCACTTGGGCTGTCTACTCCTTGCTGAGCATAATATTATATCTGAAGC 840
consensus_6235#2 ------------------------------------------------------------
consensus_6235#1 ------------------------------------------------------------
consensus_6235#0 ATTCCTTACTGCGTCATCCTGGTCTAGATGTGTCATCATGATTCAGCGATACAAGGAAGT 900
consensus_6235#2 ------------------------------------------------------------
consensus_6235#1 ------------------------------------------------------------
consensus_6235#0 TCTTGTATACTCAGTCCTCTTAGCAAAATTTGAACCCAGCCAGAGTGGGAAAGCAAATAC 960
consensus_6235#2 ------------------------------------------------------------
consensus_6235#1 ------------------------------------------------------------
consensus_6235#0 ACACATTATGCATGGTGCCTCACACGTCTATTTTCTAATAGACAGTTTGTGAAGAATGTT 1020
consensus_6235#2 ------------------------------------------------TCAAAAGGAGAG 12
consensus_6235#1 --------------------------------------------------AAAAGGAGAG 10
** *
consensus_6235#0 CATGATGTGGCGAAGACATGGGAAGGGCAGCTCAAAAGGAGAGCAGAAGAGTCTCATGCA 1080
consensus_6235#2 CA-GAAGAGTCTCATGCAATCCAAATGC----CTGATAAATACTCGGGTAGTCTCTTAGG 67
consensus_6235#1 CA-GAAGGGTCTCATGCAATCCAAATGC----CTGATAAATGCTCGGGTAGTCTATTAGG 65
** ** * * * * ** ** ** * * * * ***** *
consensus_6235#0 ATCCAAATGCCTGATAAATACTCAGTTCCTTCAATGTGTACATGCCCTCTGGAATCGAGA 1140
consensus_6235#2 GTTGATCCTTCCATTGCTCCTAAGGTTCCTTCAATGTGTACATGCCCTCTGGAATCGAGA 127
consensus_6235#1 GTTGATCCCCCCATTGCTCCTAAGGTTCCTTCAACGTGTTCATGCCCTCGGGAGTCGAGA 125
* * * * ********** **** ********* *** ******
consensus_6235#0 TATTACTTATGATCTATCAAAAAAGTTTGCAAAAGCTAAAAGACTTGGGAT----GAGGA 1196
consensus_6235#2 TATTACTTATGATCTATCAAAAAAGTTTGCAAAAGCTAAAAGACTTGGGATCGATGAGGA 187
consensus_6235#1 TATTACTTATGATCTATCGACAAAGTGTGCAATAGCTAAAAGCCTTGGGATCGATGAGGA 185
****************** * ***** ***** ********* ******** *****
consensus_6235#0 GGAAGGTTTCCAAGAAATTGAGATGAGACAATGGCTACAGGATATCCGAGAGATTGGAAA 1256
consensus_6235#2 GGAAGGTTTCCAAGAAATTGAGATGAGACAATGGCTACAGGATATCCGAGAGATTGGAAA 247
consensus_6235#1 GGAAGGTTTCCAAGAAAGTATGATGAGTCAATGGGCACAGGCTATCCGATAGATTGGAAA 245
***************** * ****** ****** ***** ******* **********
consensus_6235#0 ATGTATTAAATTGCAGCAGGCGCACAAGGGCAAGATTTGTACATGGAATTGGGAGTTTGA 1316
consensus_6235#2 ATGTATTAAATTGCAGCAGGCGCACAAGGGCAAGATTTGTACATGGAATTGGGAGTTTGA 307
consensus_6235#1 ATGTATTAAATTGCAGCTGGCGCACAAGGGCAAGTTTCGTACACGGAACTGGGAGTTTGA 305
***************** **************** ** ***** **** ***********
consensus_6235#0 AGATGAATTTGAAGATATCTTCCAGTTTATTTTGAGATGATGCAAGAAGTGGATACAATG 1376
consensus_6235#2 AGATGAATTTGAAGATATCTTCCAGTTTATTTTGAGATGATGCAAGAAGTGGATACAATG 367
consensus_6235#1 AGATGAATGGGAAGATATCTTGCAGCATATTCTCAGTTGATGCCAGAAGTGGATACAACG 365
******** *********** *** **** * ** ****** ************** *
consensus_6235#0 GTTGGGTGTTTTGAGGTTGATTTTTTTGGACCGGGAAGTTCTATATAAGAAATTGAGGCC 1436
consensus_6235#2 GTTGGGCGTTTTGAGGTTGATTTTTTTGGACCGGGAAGTTCTATATAAGAAATTGAGGCC 427
consensus_6235#1 TAAGGGTGGTATGAGTTTGATTTTCTTGGACCAGGAAGTCCTTTCTAAGAAATTCAGGCC 425
*** * * **** ******** ******* ****** ** * ********* *****
consensus_6235#0 TGAATTTAGATCCATGTATGCCATTGACAGTAGCAAGTACCCT-CATCTA-AGGATCATC 1494
consensus_6235#2 TGAATTTAGATCCATGTATGCCATTGACAGTAGCAAGTACCCT-CATCTA-AGGATCATC 485
consensus_6235#1 TCAAATTAAATTCCCGTTTCCCGTCGCCGGTAACTAGTCTCCTTCATTTACAGGATCCTC 485
* ** *** ** * ** * ** * * * *** * *** *** *** ** ****** **
consensus_6235#0 TCAAATATGTG--AGAA-GTAT---GCACTTGCTATGATTTCT-AATAATC-AGCTTGTA 1546
consensus_6235#2 TCAAATATGTG--AGAA-GTAT---GCACTTGCTATGATTTCT-AATAATC-AGCTTGTA 537
consensus_6235#1 TCCAACATATGTCAGAATGTATAGCGTCCTAGCTATGATTTTTTAATATTCTAGGGTGTA 545
** ** ** ** **** **** * ** ********** * **** ** ** ****
consensus_6235#0 GGGTTCC-CCGTAAGGAAAAAA-GAGTACAACAACTATTTTACATTTTAGCATCAATTA- 1603
consensus_6235#2 GGGTTCC-CCGTAAGGAAAAA--GAGTACAACAACTATTTTACATTTTAGCATCAATTG- 593
consensus_6235#1 GGGTTTTTCCGTAAGGAAAAAAAGAGACTAACAACTATTTTGCTCTTTAGCATCAAATAT 605
***** ************* *** ************ * *********** *
consensus_6235#0 CTTCGGATCGACTATTTTACCCCTATTTTGATCTTCAATTTTGATTTTGCCCCTGTATTT 1663
consensus_6235#2 CTTCGGATCGACTATTTTACCCCTATTTTGATCTTCAATTTTGATTT------------- 640
consensus_6235#1 CTTCGGATCGGATATTTTTCCCCTCTTCTGATTTTCAAAAAAAAAAA------------- 652
********** ****** ***** ** **** ***** *
consensus_6235#0 TTTTAAAAAAAAAA 1677
consensus_6235#2 --------------
consensus_6235#1 --------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||