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Oryza sativa
cluster # 6253 cluster # 6253       Sequences # 4       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6253#0 length = 1720 sequences # 1  
consensus_6253#1 length = 1515 sequences # 1  
consensus_6253#2 length = 677 sequences # 1  
consensus_6253#3 length = 633 sequences # 1  

consensusID : consensus_6253#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1720
fasta sequence
                              [ACAGAAATATAATCTGGCTTTGCCATGGCTCTCTTCCTCCTCCAACTCTGCCTCCCCTAATTTCTATTTCTCTAATCCTAGTCTCATGCTTCTGCCTTCTCTATGTTGCTCTTCCCAATCCCTGATTCTACTCTCTTGATTGTATCCCTGGGCACTTGTATTCTTGAGTGGATTTGCAATATATTGGTGGCACTGTGTGTGAGAGATTTGGTGTGATTGTGTTGGTTCGTGACAGATCGGGGCGACGTGGGGGTGGGAGGAGAGAGCGCCGCCCAACCCGAGACGGTGGAGGACGCCGGCGGCGAGGGCATCATGGCGGGCGCCGCCGCCGCCGCCGCCAAGGGTTCCAGATATAAGCTGCATGGCAAGAAGAGCAAAGTTGACAATCAACCTCAAATTAAGGAAATCCACGATAAATGTGGAACAATTAATACATGTAAGACTAAGGCAGATACTAAACTTCATGGGGGGAAAAACTGCATATATCAAGGTCTGTTCTACAATCTACATAACATCTAAAGTTCTCTCCCCAAAAATGACAAAAGTACAAAATCTTCATTGTGTCCGTTTTTGAAACCTTTATTTTGAAGAAGTTTGATGGAACGGTGGGAGTGCCAATATTGAGATCCAAAAGGGTTCCACCATCAGAGGTATGCTTTGATTATTGATTGAATTATATTGTGGAAAACCAATGTTAGAAACTTAAAAGGCTCCATGACATAATATTTATTTTGATTGGCTGATAGGACTAAATGGCCAAGACAATATTTTTGAATTTCAAAACTTTTACATCCTTGATCCTGGATGTATCGAATACACCATGCGAAGGTAGATGGTCAAAGTTGTGCCTAACTGCCTATGACCCCTCGCTGGTAACCTCAATGCACTTTCAGTAATTTTACTGTACAAAATGAAGTGAATATCTTTTGCTTAACTTATAGCATACTCCCTCTGTCAAAAAAAAAAAATCAACCTGACAATGTATCTGGACATAGGGTATGTTCAGATACATTGTCCTATAAGAGGTTACATCCCTTTATAGGTTGATTATTTTTTTGGGACGGAGGGAGTATATGGTATCTCTAAGAGTAGCTAGTTTATCATTGACGTTTATGCCTTACGTACCAGTGCTTTTTTACTGCCTCTTACAGAGAGCAGTGCGCATCAACTGTATTTGTCCCTTTTTGCTGACCTTTGGCACTCTTTGGTGTTCTACTTGAGGGATGCAGTTAGCATGATACTCCTGATATAAGGTAGAGAAAGGGTTCTAGGTTCATAATTTAAAACATGGGTAAATTATTTAAATTTAAGGTGAAACCATTCTACTTTAGAATTTTCAATATGCAGAGGGATTAAAGCCAATCCCTTTTTGGAACTTTCAATTCATTTAACTGTTCATCCAAAGGGGCTGTGCCAAATACACATGCCCAAGCAAATGCTTAGAGATTTGGATAACCTGAAAGCAAAGGAGAATCTTTCATTTTCACATCAATTAAGATTGAAACCAATGGACATGCAAGGATGGTTGAATTTTGGGGCACTTTTTTCATGCACATTGTTCATTTGTTTCTTTTGAATGCGTTATTGCAGGAGGATTCAGATGCGATGGAGTCGTAATACATCAAGAGAATCGTTTGTTGTCCTTGTGGCAGAATTCGCAAGTCAAGGCTAACCATATAATGCTTATTTGTTCTGGTTTTTAAGAGCCTGTTCTTTATGG]

[+] EMBL AK068242             [ACAGAAATATAATCTGGCTTTGCCATGGCTCTCTTCCTCCTCCAACTCTGCCTCCCCTAATTTCTATTTCTCTAATCCTAGTCTCATGCTTCTGCCTTCTCTATGTTGCTCTTCCCAATCCCTGATTCTACTCTCTTGATTGTATCCCTGGGCACTTGTATTCTTGAGTGGATTTGCAATATATTGGTGGCACTGTGTGTGAGAGATTTGGTGTGATTGTGTTGGTTCGTGACAGATCGGGGCGACGTGGGGGTGGGAGGAGAGAGCGCCGCCCAACCCGAGACGGTGGAGGACGCCGGCGGCGAGGGCATCATGGCGGGCGCCGCCGCCGCCGCCGCCAAGGGTTCCAGATATAAGCTGCATGGCAAGAAGAGCAAAGTTGACAATCAACCTCAAATTAAGGAAATCCACGATAAATGTGGAACAATTAATACATGTAAGACTAAGGCAGATACTAAACTTCATGGGGGGAAAAACTGCATATATCAAGGTCTGTTCTACAATCTACATAACATCTAAAGTTCTCTCCCCAAAAATGACAAAAGTACAAAATCTTCATTGTGTCCGTTTTTGAAACCTTTATTTTGAAGAAGTTTGATGGAACGGTGGGAGTGCCAATATTGAGATCCAAAAGGGTTCCACCATCAGAGGTATGCTTTGATTATTGATTGAATTATATTGTGGAAAACCAATGTTAGAAACTTAAAAGGCTCCATGACATAATATTTATTTTGATTGGCTGATAGGACTAAATGGCCAAGACAATATTTTTGAATTTCAAAACTTTTACATCCTTGATCCTGGATGTATCGAATACACCATGCGAAGGTAGATGGTCAAAGTTGTGCCTAACTGCCTATGACCCCTCGCTGGTAACCTCAATGCACTTTCAGTAATTTTACTGTACAAAATGAAGTGAATATCTTTTGCTTAACTTATAGCATACTCCCTCTGTCAAAAAAAAAAAATCAACCTGACAATGTATCTGGACATAGGGTATGTTCAGATACATTGTCCTATAAGAGGTTACATCCCTTTATAGGTTGATTATTTTTTTGGGACGGAGGGAGTATATGGTATCTCTAAGAGTAGCTAGTTTATCATTGACGTTTATGCCTTACGTACCAGTGCTTTTTTACTGCCTCTTACAGAGAGCAGTGCGCATCAACTGTATTTGTCCCTTTTTGCTGACCTTTGGCACTCTTTGGTGTTCTACTTGAGGGATGCAGTTAGCATGATACTCCTGATATAAGGTAGAGAAAGGGTTCTAGGTTCATAATTTAAAACATGGGTAAATTATTTAAATTTAAGGTGAAACCATTCTACTTTAGAATTTTCAATATGCAGAGGGATTAAAGCCAATCCCTTTTTGGAACTTTCAATTCATTTAACTGTTCATCCAAAGGGGCTGTGCCAAATACACATGCCCAAGCAAATGCTTAGAGATTTGGATAACCTGAAAGCAAAGGAGAATCTTTCATTTTCACATCAATTAAGATTGAAACCAATGGACATGCAAGGATGGTTGAATTTTGGGGCACTTTTTTCATGCACATTGTTCATTTGTTTCTTTTGAATGCGTTATTGCAGGAGGATTCAGATGCGATGGAGTCGTAATACATCAAGAGAATCGTTTGTTGTCCTTGTGGCAGAATTCGCAAGTCAAGGCTAACCATATAATGCTTATTTGTTCTGGTTTTTAAGAGCCTGTTCTTTATGG]


>consensus_6253#0 ACAGAAATATAATCTGGCTTTGCCATGGCTCTCTTCCTCCTCCAACTCTGCCTCCCCTAA TTTCTATTTCTCTAATCCTAGTCTCATGCTTCTGCCTTCTCTATGTTGCTCTTCCCAATC CCTGATTCTACTCTCTTGATTGTATCCCTGGGCACTTGTATTCTTGAGTGGATTTGCAAT ATATTGGTGGCACTGTGTGTGAGAGATTTGGTGTGATTGTGTTGGTTCGTGACAGATCGG GGCGACGTGGGGGTGGGAGGAGAGAGCGCCGCCCAACCCGAGACGGTGGAGGACGCCGGC GGCGAGGGCATCATGGCGGGCGCCGCCGCCGCCGCCGCCAAGGGTTCCAGATATAAGCTG CATGGCAAGAAGAGCAAAGTTGACAATCAACCTCAAATTAAGGAAATCCACGATAAATGT GGAACAATTAATACATGTAAGACTAAGGCAGATACTAAACTTCATGGGGGGAAAAACTGC ATATATCAAGGTCTGTTCTACAATCTACATAACATCTAAAGTTCTCTCCCCAAAAATGAC AAAAGTACAAAATCTTCATTGTGTCCGTTTTTGAAACCTTTATTTTGAAGAAGTTTGATG GAACGGTGGGAGTGCCAATATTGAGATCCAAAAGGGTTCCACCATCAGAGGTATGCTTTG ATTATTGATTGAATTATATTGTGGAAAACCAATGTTAGAAACTTAAAAGGCTCCATGACA TAATATTTATTTTGATTGGCTGATAGGACTAAATGGCCAAGACAATATTTTTGAATTTCA AAACTTTTACATCCTTGATCCTGGATGTATCGAATACACCATGCGAAGGTAGATGGTCAA AGTTGTGCCTAACTGCCTATGACCCCTCGCTGGTAACCTCAATGCACTTTCAGTAATTTT ACTGTACAAAATGAAGTGAATATCTTTTGCTTAACTTATAGCATACTCCCTCTGTCAAAA AAAAAAAATCAACCTGACAATGTATCTGGACATAGGGTATGTTCAGATACATTGTCCTAT AAGAGGTTACATCCCTTTATAGGTTGATTATTTTTTTGGGACGGAGGGAGTATATGGTAT CTCTAAGAGTAGCTAGTTTATCATTGACGTTTATGCCTTACGTACCAGTGCTTTTTTACT GCCTCTTACAGAGAGCAGTGCGCATCAACTGTATTTGTCCCTTTTTGCTGACCTTTGGCA CTCTTTGGTGTTCTACTTGAGGGATGCAGTTAGCATGATACTCCTGATATAAGGTAGAGA AAGGGTTCTAGGTTCATAATTTAAAACATGGGTAAATTATTTAAATTTAAGGTGAAACCA TTCTACTTTAGAATTTTCAATATGCAGAGGGATTAAAGCCAATCCCTTTTTGGAACTTTC AATTCATTTAACTGTTCATCCAAAGGGGCTGTGCCAAATACACATGCCCAAGCAAATGCT TAGAGATTTGGATAACCTGAAAGCAAAGGAGAATCTTTCATTTTCACATCAATTAAGATT GAAACCAATGGACATGCAAGGATGGTTGAATTTTGGGGCACTTTTTTCATGCACATTGTT CATTTGTTTCTTTTGAATGCGTTATTGCAGGAGGATTCAGATGCGATGGAGTCGTAATAC ATCAAGAGAATCGTTTGTTGTCCTTGTGGCAGAATTCGCAAGTCAAGGCTAACCATATAA TGCTTATTTGTTCTGGTTTTTAAGAGCCTGTTCTTTATGG



consensusID : consensus_6253#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1515
fasta sequence
                              [ACAGAAATATAATCTGGCTTTGCCATGGCTCTCTTCCTCCTCCAACTCTGCCTCCCCTAATTTCTATTTCTCTAATCCTAGTCTCATGCTTCTGCCTTCTCTATGTTGCTCTTCCCAATCCCTGATTCTACTCTCTTGATTGTATCCCTGGGCACTTGTATTCTTGAGTGGATTTGCAATATATTGGTGGCACTGTGTGTGAGAGATTTGGTGTGATTGTGTTGGTTCGTGACAGATCGGGGCGACGTGGGGGTGGGAGGAGAGAGCGCCGCCCAACCCGAGACGGTGGAGGACGCCGGCGGCGAGGGCATCATGGCGGGCGCCGCCGCCGCCGCCGCCAAGGGTTCCAGATATAAGCTGCATGGCAAGAAGAGCAAAGTTGACAATCAACCTCAAATTAAGGAAATCCACGATAAATGTGGAACAATTAATACATGTAAGACTAAGGCAGATACTAAACTTCATGGGGGGAAAAACTGCATATATCAAGTTTGATGGAACGGTGGGAGTGCCAATATTGAGATCCAAAAGGGTTCCACCATCAGAGGACTAAATGGCCAAGACAATATTTTTGAATTTCAAAACTTTTACATCCTTGATCCTGGATGTATCGAATACACCATGCGAAGGTAGATGGTCAAAGTTGTGCCTAACTGCCTATGACCCCTCGCTGGAGGATTCAGATGCGATGGAGTCGTAATACATCAAGAGAATCGTTTGTTGTCCTTGTGGCAGAATTCGCAAGTCAAGGCTAACCATATAATGCTTATTTGTTCTGGTTTTTAAGAGCCTGTTCTTTATGGTGCAAACTTCAAAAAAAAAAAAAAAAAAAAAAAACTTTGCCTCAAAAAGAACTTCAGAAAATGCATCTCCAACTTCAATGGTCAAGCTAAGAAGCTAGGAGCTAGAGGTTGGAGCCGTGCCAAAGAGTCCTAACTTTCGTTGGGCCTGGCTTATGATACAAGATTAACATGATTTTATCTGGTTCATTTATTTGATGTATTTTTTGGTGTGGTTCTTGTTGGAAAAAGAGATGAACCGCAGAGTGCCTTGTTCTCTCGCAGTACTTTGTGGTAGCTGAGAACAGTACTGAGTACGACTGCTGATTACTTAATTGGATGCTGACAGCACTTGGTTATTCTCTTGGTTTGCACTAATATGAATGTTTTTCTTTGGACGTTTTTGGGCAGATGATGGACATTGGTGGTGAAGGAGATCCGTAGGTGCAAGATGAGGACCATATGAATTTGGTGAGACAGTTTTAGCTTTATCATCTTAGCATCAGTCAAGTCTACAGAGTGGAGTTGAGGTGGTGATTGATGTTTGACCATCAAGCAGGTGGTGCTTTTCGCAACTTCACCTGACCTTTTTTTTTTTGTCCAATTGCTGAGTGAAAACATATGTGATGTCTCAAGTCTCTCTACCAATGCCAGCTTTCAATCCAGAACTTGAACATGAATTGCAAAACTGTAAATGAATTTGCTAGGAATTTACCATTTCAAGAAATCTTGGAGT]

[+] EMBL AK102513             [ACAGAAATATAATCTGGCTTTGCCATGGCTCTCTTCCTCCTCCAACTCTGCCTCCCCTAATTTCTATTTCTCTAATCCTAGTCTCATGCTTCTGCCTTCTCTATGTTGCTCTTCCCAATCCCTGATTCTACTCTCTTGATTGTATCCCTGGGCACTTGTATTCTTGAGTGGATTTGCAATATATTGGTGGCACTGTGTGTGAGAGATTTGGTGTGATTGTGTTGGTTCGTGACAGATCGGGGCGACGTGGGGGTGGGAGGAGAGAGCGCCGCCCAACCCGAGACGGTGGAGGACGCCGGCGGCGAGGGCATCATGGCGGGCGCCGCCGCCGCCGCCGCCAAGGGTTCCAGATATAAGCTGCATGGCAAGAAGAGCAAAGTTGACAATCAACCTCAAATTAAGGAAATCCACGATAAATGTGGAACAATTAATACATGTAAGACTAAGGCAGATACTAAACTTCATGGGGGGAAAAACTGCATATATCAAGTTTGATGGAACGGTGGGAGTGCCAATATTGAGATCCAAAAGGGTTCCACCATCAGAGGACTAAATGGCCAAGACAATATTTTTGAATTTCAAAACTTTTACATCCTTGATCCTGGATGTATCGAATACACCATGCGAAGGTAGATGGTCAAAGTTGTGCCTAACTGCCTATGACCCCTCGCTGGAGGATTCAGATGCGATGGAGTCGTAATACATCAAGAGAATCGTTTGTTGTCCTTGTGGCAGAATTCGCAAGTCAAGGCTAACCATATAATGCTTATTTGTTCTGGTTTTTAAGAGCCTGTTCTTTATGGTGCAAACTTCAAAAAAAAAAAAAAAAAAAAAAAACTTTGCCTCAAAAAGAACTTCAGAAAATGCATCTCCAACTTCAATGGTCAAGCTAAGAAGCTAGGAGCTAGAGGTTGGAGCCGTGCCAAAGAGTCCTAACTTTCGTTGGGCCTGGCTTATGATACAAGATTAACATGATTTTATCTGGTTCATTTATTTGATGTATTTTTTGGTGTGGTTCTTGTTGGAAAAAGAGATGAACCGCAGAGTGCCTTGTTCTCTCGCAGTACTTTGTGGTAGCTGAGAACAGTACTGAGTACGACTGCTGATTACTTAATTGGATGCTGACAGCACTTGGTTATTCTCTTGGTTTGCACTAATATGAATGTTTTTCTTTGGACGTTTTTGGGCAGATGATGGACATTGGTGGTGAAGGAGATCCGTAGGTGCAAGATGAGGACCATATGAATTTGGTGAGACAGTTTTAGCTTTATCATCTTAGCATCAGTCAAGTCTACAGAGTGGAGTTGAGGTGGTGATTGATGTTTGACCATCAAGCAGGTGGTGCTTTTCGCAACTTCACCTGACCTTTTTTTTTTTGTCCAATTGCTGAGTGAAAACATATGTGATGTCTCAAGTCTCTCTACCAATGCCAGCTTTCAATCCAGAACTTGAACATGAATTGCAAAACTGTAAATGAATTTGCTAGGAATTTACCATTTCAAGAAATCTTGGAGT]


>consensus_6253#1 ACAGAAATATAATCTGGCTTTGCCATGGCTCTCTTCCTCCTCCAACTCTGCCTCCCCTAA TTTCTATTTCTCTAATCCTAGTCTCATGCTTCTGCCTTCTCTATGTTGCTCTTCCCAATC CCTGATTCTACTCTCTTGATTGTATCCCTGGGCACTTGTATTCTTGAGTGGATTTGCAAT ATATTGGTGGCACTGTGTGTGAGAGATTTGGTGTGATTGTGTTGGTTCGTGACAGATCGG GGCGACGTGGGGGTGGGAGGAGAGAGCGCCGCCCAACCCGAGACGGTGGAGGACGCCGGC GGCGAGGGCATCATGGCGGGCGCCGCCGCCGCCGCCGCCAAGGGTTCCAGATATAAGCTG CATGGCAAGAAGAGCAAAGTTGACAATCAACCTCAAATTAAGGAAATCCACGATAAATGT GGAACAATTAATACATGTAAGACTAAGGCAGATACTAAACTTCATGGGGGGAAAAACTGC ATATATCAAGTTTGATGGAACGGTGGGAGTGCCAATATTGAGATCCAAAAGGGTTCCACC ATCAGAGGACTAAATGGCCAAGACAATATTTTTGAATTTCAAAACTTTTACATCCTTGAT CCTGGATGTATCGAATACACCATGCGAAGGTAGATGGTCAAAGTTGTGCCTAACTGCCTA TGACCCCTCGCTGGAGGATTCAGATGCGATGGAGTCGTAATACATCAAGAGAATCGTTTG TTGTCCTTGTGGCAGAATTCGCAAGTCAAGGCTAACCATATAATGCTTATTTGTTCTGGT TTTTAAGAGCCTGTTCTTTATGGTGCAAACTTCAAAAAAAAAAAAAAAAAAAAAAAACTT TGCCTCAAAAAGAACTTCAGAAAATGCATCTCCAACTTCAATGGTCAAGCTAAGAAGCTA GGAGCTAGAGGTTGGAGCCGTGCCAAAGAGTCCTAACTTTCGTTGGGCCTGGCTTATGAT ACAAGATTAACATGATTTTATCTGGTTCATTTATTTGATGTATTTTTTGGTGTGGTTCTT GTTGGAAAAAGAGATGAACCGCAGAGTGCCTTGTTCTCTCGCAGTACTTTGTGGTAGCTG AGAACAGTACTGAGTACGACTGCTGATTACTTAATTGGATGCTGACAGCACTTGGTTATT CTCTTGGTTTGCACTAATATGAATGTTTTTCTTTGGACGTTTTTGGGCAGATGATGGACA TTGGTGGTGAAGGAGATCCGTAGGTGCAAGATGAGGACCATATGAATTTGGTGAGACAGT TTTAGCTTTATCATCTTAGCATCAGTCAAGTCTACAGAGTGGAGTTGAGGTGGTGATTGA TGTTTGACCATCAAGCAGGTGGTGCTTTTCGCAACTTCACCTGACCTTTTTTTTTTTGTC CAATTGCTGAGTGAAAACATATGTGATGTCTCAAGTCTCTCTACCAATGCCAGCTTTCAA TCCAGAACTTGAACATGAATTGCAAAACTGTAAATGAATTTGCTAGGAATTTACCATTTC AAGAAATCTTGGAGT



consensusID : consensus_6253#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 677
fasta sequence
                              [TTCGAGAAGCGTAAATTTTCATCCATCCTTCTCCCAATTTTTAAACAAGTCTGGGGCACAGGGGCAATCCCAATATGAGATCCAGAAGGGTTCACCCATCAGAGCCCTAAAGGGCCAAGACAATATTTTTGAATTTCAAAACTTTTACATCCTTGATCCCAGATGTATGGAATACACCATGGGAAGGTAGATGGTCAAGTTGTGCCCAACTGCCTATGTCCCTCACTGTTTATCATTGACGGGAGTTATGCCTTATGTACCAGTGCTTTTTTACTGCCTAGGGAGTATTACAGAGAGCAGTGCGCATCACTGTATTTGTGACTGATGATGGTCATTGGTGATGAAGGAGATCCGTAGCAAGATGATGACCATATGAATTTGGTGAGACAGTTTTAGCTTTATCATTTTAACATCAGTCAAGTCTAAAGAGTTGAGGTGGTGATTGATGTCTGACCATCAAGCAGGTGGTGCTTTTCGCAATTTCACCTGACCTTTTTTTTTTTGTTCAATTGCTGAGGGAAATCATATGTGATGCCTCAAGTCTCTCTCCACCAATGCCAGATTTCAATCCAGAACTTGAACATGAATAGCAAAATTGTAAATGAATTTGCTAGGAATTTACCATTTCAAGAAATCTTGGAATATTAACAGGCACAAATTGCGGAGTAAAAAAAAAA]

[-] EMBL CA760721             [TTCGAGAAGCGTAAATTTTCATCCATCCTTCTCCCAATTTTTAAACAAGTCTGGGGCACAGGGGCAATCCCAATATGAGATCCAGAAGGGTTCACCCATCAGAGCCCTAAAGGGCCAAGACAATATTTTTGAATTTCAAAACTTTTACATCCTTGATCCCAGATGTATGGAATACACCATGGGAAGGTAGATGGTCAAGTTGTGCCCAACTGCCTATGTCCCTCACTGTTTATCATTGACGGGAGTTATGCCTTATGTACCAGTGCTTTTTTACTGCCTAGGGAGTATTACAGAGAGCAGTGCGCATCACTGTATTTGTGACTGATGATGGTCATTGGTGATGAAGGAGATCCGTAGCAAGATGATGACCATATGAATTTGGTGAGACAGTTTTAGCTTTATCATTTTAACATCAGTCAAGTCTAAAGAGTTGAGGTGGTGATTGATGTCTGACCATCAAGCAGGTGGTGCTTTTCGCAATTTCACCTGACCTTTTTTTTTTTGTTCAATTGCTGAGGGAAATCATATGTGATGCCTCAAGTCTCTCTCCACCAATGCCAGATTTCAATCCAGAACTTGAACATGAATAGCAAAATTGTAAATGAATTTGCTAGGAATTTACCATTTCAAGAAATCTTGGAATATTAACAGGCACAAATTGCGGAGTAAAAAAAAAA]


>consensus_6253#2 TTCGAGAAGCGTAAATTTTCATCCATCCTTCTCCCAATTTTTAAACAAGTCTGGGGCACA GGGGCAATCCCAATATGAGATCCAGAAGGGTTCACCCATCAGAGCCCTAAAGGGCCAAGA CAATATTTTTGAATTTCAAAACTTTTACATCCTTGATCCCAGATGTATGGAATACACCAT GGGAAGGTAGATGGTCAAGTTGTGCCCAACTGCCTATGTCCCTCACTGTTTATCATTGAC GGGAGTTATGCCTTATGTACCAGTGCTTTTTTACTGCCTAGGGAGTATTACAGAGAGCAG TGCGCATCACTGTATTTGTGACTGATGATGGTCATTGGTGATGAAGGAGATCCGTAGCAA GATGATGACCATATGAATTTGGTGAGACAGTTTTAGCTTTATCATTTTAACATCAGTCAA GTCTAAAGAGTTGAGGTGGTGATTGATGTCTGACCATCAAGCAGGTGGTGCTTTTCGCAA TTTCACCTGACCTTTTTTTTTTTGTTCAATTGCTGAGGGAAATCATATGTGATGCCTCAA GTCTCTCTCCACCAATGCCAGATTTCAATCCAGAACTTGAACATGAATAGCAAAATTGTA AATGAATTTGCTAGGAATTTACCATTTCAAGAAATCTTGGAATATTAACAGGCACAAATT GCGGAGTAAAAAAAAAA



consensusID : consensus_6253#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 633
fasta sequence
                              [GACGTCGGGGTGGGAGGAGAGAGCGCCGCCCGACCCGAGACGGTGGAGGACGCCGGCGGTGAGGACATCATGGCGGGATGGATGCACCGCCGCCGCCATCGCCAAGGGTTCCAGGTCAGCTTTTCCAGTCTCCTCCTTCCCCTCTTCTTCCTCGGTCCTCTGATTCTTTCCGCCATGAGTTCTTGTTGTTCTACCAGCAGCAAGTGTTATGTGCAAAACACAGGGCGAGGAGCAAACAAGATGCAGATCCAGCGCCATCGATGGCTGTGTCGGAAGAATTAATTAATCCTGGTTTGGATAAATCTTCCCAAGCAAACCGAATTAATCTTGGTTAAATTGAGGAGTTTAGCGCTAGACAATCTTAATACCATTGGATGGTCTCTCCTAGGACAGCCATTCCGGATAAAAAGGAGTTTAGCAGGCAGTAGGCTAAAGAATTTGATGCAAACTCTCCAAAATGTGATCCTGGTTTGGAAGGGACAATATTTGATCATTTCAATCTTCTTGAATGTATAAGGTTAAGTATTAGTAACATTTAGGAGGGAGCATCAACTAANACAGAGCCTGAAAAATTATTGCTGGCCCATAACATTCATTTCATTATTGGTATGTATTCCGGCCTTATTTATGCTT]

[+] EMBL CF322723             [GACGTCGGGGTGGGAGGAGAGAGCGCCGCCCGACCCGAGACGGTGGAGGACGCCGGCGGTGAGGACATCATGGCGGGATGGATGCACCGCCGCCGCCATCGCCAAGGGTTCCAGGTCAGCTTTTCCAGTCTCCTCCTTCCCCTCTTCTTCCTCGGTCCTCTGATTCTTTCCGCCATGAGTTCTTGTTGTTCTACCAGCAGCAAGTGTTATGTGCAAAACACAGGGCGAGGAGCAAACAAGATGCAGATCCAGCGCCATCGATGGCTGTGTCGGAAGAATTAATTAATCCTGGTTTGGATAAATCTTCCCAAGCAAACCGAATTAATCTTGGTTAAATTGAGGAGTTTAGCGCTAGACAATCTTAATACCATTGGATGGTCTCTCCTAGGACAGCCATTCCGGATAAAAAGGAGTTTAGCAGGCAGTAGGCTAAAGAATTTGATGCAAACTCTCCAAAATGTGATCCTGGTTTGGAAGGGACAATATTTGATCATTTCAATCTTCTTGAATGTATAAGGTTAAGTATTAGTAACATTTAGGAGGGAGCATCAACTAANACAGAGCCTGAAAAATTATTGCTGGCCCATAACATTCATTTCATTATTGGTATGTATTCCGGCCTTATTTATGCTT]


>consensus_6253#3 GACGTCGGGGTGGGAGGAGAGAGCGCCGCCCGACCCGAGACGGTGGAGGACGCCGGCGGT GAGGACATCATGGCGGGATGGATGCACCGCCGCCGCCATCGCCAAGGGTTCCAGGTCAGC TTTTCCAGTCTCCTCCTTCCCCTCTTCTTCCTCGGTCCTCTGATTCTTTCCGCCATGAGT TCTTGTTGTTCTACCAGCAGCAAGTGTTATGTGCAAAACACAGGGCGAGGAGCAAACAAG ATGCAGATCCAGCGCCATCGATGGCTGTGTCGGAAGAATTAATTAATCCTGGTTTGGATA AATCTTCCCAAGCAAACCGAATTAATCTTGGTTAAATTGAGGAGTTTAGCGCTAGACAAT CTTAATACCATTGGATGGTCTCTCCTAGGACAGCCATTCCGGATAAAAAGGAGTTTAGCA GGCAGTAGGCTAAAGAATTTGATGCAAACTCTCCAAAATGTGATCCTGGTTTGGAAGGGA CAATATTTGATCATTTCAATCTTCTTGAATGTATAAGGTTAAGTATTAGTAACATTTAGG AGGGAGCATCAACTAANACAGAGCCTGAAAAATTATTGCTGGCCCATAACATTCATTTCA TTATTGGTATGTATTCCGGCCTTATTTATGCTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6253#1      ACAGAAATATAATCTGGCTTTGCCATGGCTCTCTTCCTCCTCCAACTCTGCCTCCCCTAA 60
consensus_6253#2      ------------------------------------------------------------
consensus_6253#0      ACAGAAATATAATCTGGCTTTGCCATGGCTCTCTTCCTCCTCCAACTCTGCCTCCCCTAA 60
consensus_6253#3      ------------------------------------------------------------
                                                                                  

consensus_6253#1      TTTCTATTTCTCTAATCCTAGTCTCATGCTTCTGCCTTCTCTATGTTGCTCTTCCCAATC 120
consensus_6253#2      ------------------------------------------------------------
consensus_6253#0      TTTCTATTTCTCTAATCCTAGTCTCATGCTTCTGCCTTCTCTATGTTGCTCTTCCCAATC 120
consensus_6253#3      ------------------------------------------------------------
                                                                                  

consensus_6253#1      CCTGATTCTACTCTCTTGATTGTATCCCTGGGCACTTGTATTCTTGAGTGGATTTGCAAT 180
consensus_6253#2      ------------------------------------------------------------
consensus_6253#0      CCTGATTCTACTCTCTTGATTGTATCCCTGGGCACTTGTATTCTTGAGTGGATTTGCAAT 180
consensus_6253#3      ------------------------------------------------------------
                                                                                  

consensus_6253#1      ATATTGGTGGCACTGTGTGTGAGAGATTTGGTGTGATTGTGTTGGTTCGTGACAGATCGG 240
consensus_6253#2      ------------------------------------------------------------
consensus_6253#0      ATATTGGTGGCACTGTGTGTGAGAGATTTGGTGTGATTGTGTTGGTTCGTGACAGATCGG 240
consensus_6253#3      ------------------------------------------------------------
                                                                                  

consensus_6253#1      GGCGACGTGGGGGTGGGAGGAGAGAGCGCCGCCCAACCCGAGACGGTGGAGGACGCCGGC 300
consensus_6253#2      ------------------------------------------------------------
consensus_6253#0      GGCGACGTGGGGGTGGGAGGAGAGAGCGCCGCCCAACCCGAGACGGTGGAGGACGCCGGC 300
consensus_6253#3      ---GACGTCGGGGTGGGAGGAGAGAGCGCCGCCCGACCCGAGACGGTGGAGGACGCCGGC 57
                                                                                  

consensus_6253#1      GGCGAGGGCATCATGGCGGG-------CGCCGCCGCCGCCGCCGCCAAGGGTTCCAGATA 353
consensus_6253#2      ------------------------------------------------------------
consensus_6253#0      GGCGAGGGCATCATGGCGGG-------CGCCGCCGCCGCCGCCGCCAAGGGTTCCAGATA 353
consensus_6253#3      GGTGAGGACATCATGGCGGGATGGATGCACCGCCGCCGCCATCGCCAAGGGTTCCAGGT- 116
                                                                                  

consensus_6253#1      TAAGCTGCATGGCAAGAAGAGCAAAGTTGACAATCAACCTCAAATTAAGGAAATCCACGA 413
consensus_6253#2      ------------------------------------------------------------
consensus_6253#0      TAAGCTGCATGGCAAGAAGAGCAAAGTTGACAATCAACCTCAAATTAAGGAAATCCACGA 413
consensus_6253#3      ----CAGCTTTTCCAG---------TCTCCTCCTTCCCCTCTTCTTCCTCGGTCCTCTGA 163
                                                                                  

consensus_6253#1      TAAATGTGGAACAATTAATACATGTAAGACTAAGGCAGATACTAAACTTCATGGGGGGAA 473
consensus_6253#2      ------------------------------------------------------------
consensus_6253#0      TAAATGTGGAACAATTAATACATGTAAGACTAAGGCAGATACTAAACTTCATGGGGGGAA 473
consensus_6253#3      TTCTTTCCG--CCATGAGTTCTTGTTGTTCTA---CCAGCAGCAAGTGTTATGTGCAAAA 218
                                                                                  

consensus_6253#1      AAACTGCATATATCAAGTTTGATGGAACGGTGGGAGTGCCAATATTGAGATCCAAAAGGG 533
consensus_6253#2      ------------------------------------------------------------
consensus_6253#0      AAACTGCATATATCAAGGTCTGTTCTACAATCTACATAACAT--CTAAAGTTCTCTCCCC 531
consensus_6253#3      ------CACAGGGCGAGGAGCAAACAA-GATGCAGAT-CCAGCGCCATCGATGGCTGTGT 270
                                                                                  

consensus_6253#1      TTCCACCATCAGAGGACTAAATGGCCAAGACAATATTTTTGAATTTCAAAACTTTTACAT 593
consensus_6253#2      ------------------------------------------------------------
consensus_6253#0      AAAAATGACAAAAGTACAAAATCTTCATTGTGTCCGTTTTTGAAACCTTTATTTTGAAGA 591
consensus_6253#3      CGGAAGAATTAATTAATCCTGGTTTGGATAAATCTTCCCAAGCAAACCGAATTAATCTTG 330
                                                                                  

consensus_6253#1      CCTTGATCCTGGATGTATCGAATACACCATGCGAAGGTAGATGGTCAAAGTTGTGCCTAA 653
consensus_6253#2      ------------------------------------------------------------
consensus_6253#0      AGTTTGATGGAACGGTGGGAGTGCCAATATTGAGATCCAAAAGGGTTCCACCATCAGAGG 651
consensus_6253#3      GTTAAATTGAGGAGTTTAGCGCTAGACAATCTTAATACCATTGGATGGTCTCTCCTAGGA 390
                                                                                  

consensus_6253#1      CTGCCTATGACCCCTCGCTGGAGGATTCAGATGCGATGGAGTCGTAATACATCAAGAGAA 713
consensus_6253#2      ------------------------------------------------------------
consensus_6253#0      TATGCTTTGATTATTGATTGAATTATATTGTGGAAAACCAATGTTAGAAACTTAAAAGGC 711
consensus_6253#3      CAGCC----ATTCCGGATAAAAAGGAGTTTAGCAGGCAGTAGGCTAAAGAATTTGATGCA 446
                                                                                  

consensus_6253#1      TCGTTTGTTGTCCTTGTGGCAGAATTCGCAAGTCAAGGCTAACCATATAATGCTTATTTG 773
consensus_6253#2      ------------------------------------------------------------
consensus_6253#0      TCCATGACATAATATTTATTTTGATTGGCTGATAGGACTAAATGGCCAAGACAATATTTT 771
consensus_6253#3      AACTCTCCAAAATGTG-ATCCTGGTTTGGAAGGGACAATATTTGATCATTTCAATCTTCT 505
                                                                                  

consensus_6253#1      TTCTGGTTTTTAAGAGCCTGTTCTTTATGGTGCAAACTTCAAAAAAAAAAAAAAAAAAAA 833
consensus_6253#2      ------------------------------------------------------------
consensus_6253#0      TGAATTTCAAAACTTTTACATCCTTGATCCTGGATGTATCGAATACACCATGCGAAGGTA 831
consensus_6253#3      TGAATGTATAAGGTTAAGTATTAGTAACATTTAGGAGGGAGCATCAACTAANACAGAGCC 565
                                                                                  

consensus_6253#1      AAAACTTTGCCTCAAAAAGAACTTCAGAAAATGCATCTCCAACTTCAATGGTCAAGCTAA 893
consensus_6253#2      -----TTCGAGAAGCGTAAATTTTCATCCATCCTTCTCCCAATTTT--TAAACAAGTCTG 53
consensus_6253#0      GATGGTCAAAGTTGTGCCTAACTGCCTATGACCCCTCGCTGGTAACCTCAATGCACTTTC 891
consensus_6253#3      TGAAAAATTATTGCTGGCCCATAACATTCATTTCATTATTGGTATG--TATTCCGGCCTT 623
                                              *                                   

consensus_6253#1      GAAGCTAGGAGCTAGAGGTTGGAGCCGTGCCAAAGAGTCCTAACTTTCGTTGGGCCTGGC 953
consensus_6253#2      GGGCACAGGGGC-AATCCCAATATGAGATCCAGAAGGGTTCACCCATCA--GAGCCC--- 107
consensus_6253#0      AGTAATTTTACTGTACAAAATGAAGTGAATATCTTTTGCTTAACTTATAGCATACTCCCT 951
consensus_6253#3      ATTTATGCTT-------------------------------------------------- 633
                                                                                  

consensus_6253#1      TTATGATACAAGATTAACATGATTTTATCTGGTTCATTTATTTGATGTATTTTTTGGTGT 1013
consensus_6253#2      ------TAAAGGGCCAAGACAATATT-TTTGAATTTCAAAACTTTTACATCCTT------ 154
consensus_6253#0      CTGTC-AAAAAAAAAAAATCAACCTGACAATGTATCTGGACATAGGGTATGTTCAGATAC 1010
consensus_6253#3      ------------------------------------------------------------
                                                                                  

consensus_6253#1      GGT-TCTTGTTGGAAAAAGAGATGAACCGCAGAGTGCCTTGTTCTCTCGCA-----GTAC 1067
consensus_6253#2      GAT-CCCAGATGTA---TGGAATACACCATGGGAAGGTAGATGGTCAAGTT-----GTGC 205
consensus_6253#0      ATTGTCCTATAAGAGGTTACATCCCTTTATAGGTTGATTATTTTTTTGGGACGGAGGGAG 1070
consensus_6253#3      ------------------------------------------------------------
                                                                                  

consensus_6253#1      TTTGTGGTAGCTGAGAACAGTACT-GAGTACGACTGCTGATTACTTAATTGGATGCTGAC 1126
consensus_6253#2      CCAAC--TGCCTATGTCCCTCACT-GTTTATCATTGACGGGAGTTATGCCTTATG-TACC 261
consensus_6253#0      TATATGGTATCTCTAAGAGTAGCTAGTTTATCATTGACG---TTTATGCCTTACG-TACC 1126
consensus_6253#3      ------------------------------------------------------------
                                                                                  

consensus_6253#1      AGCACTTGGTTATTCTCTT----GGTTTGCACTAAT-ATGAATGTTTTTCTTTGGACGTT 1181
consensus_6253#2      AGTGCTTTTTTACTGCCTA----GGGA-GTATTACA-GAGAGCAGTGCGCATCACTGTAT 315
consensus_6253#0      AGTGCTTTTTTACTGCCTCTTACAGAGAGCAGTGCGCATCAACTGTATTTGTCCCT-TTT 1185
consensus_6253#3      ------------------------------------------------------------
                                                                                  

consensus_6253#1      TTTGGGCAGATGATGGACATTGGTGGTGAAG--GAGATCCGTAGGT-GCAAGATGAGGAC 1238
consensus_6253#2      TTGTGACTGATGATGGTCATTGGTGATGAAG--GAGATCCGTAG----CAAGATGATGAC 369
consensus_6253#0      TGCTGACCTTTGGCACTCTTTGGTGTTCTACTTGAGGGATGCAGTTAGCATGATACTCCT 1245
consensus_6253#3      ------------------------------------------------------------
                                                                                  

consensus_6253#1      CATATGAATTTGGTGAGACAGTTTTAGCTTTATCATCTTAG-CATCAGTCAAGTCTACAG 1297
consensus_6253#2      CATATGAATTTGGTGAGACAGTTTTAGCTTTATCATTTTAA-CATCAGTCAAGTCTAAA- 427
consensus_6253#0      GATATAAGGT-AGAGAAAGGGTTCTAGGTTCATAATTTAAAACATGGGTAAATTATTTAA 1304
consensus_6253#3      ------------------------------------------------------------
                                                                                  

consensus_6253#1      AGTGGAGTTGAGGTGGTGATTGATGTTTGACCATCAAGCAGGTGGTGCTTTTCG---CAA 1354
consensus_6253#2      ----GAGTTGAGGTGGTGATTGATGTCTGACCATCAAGCAGGTGGTGCTTTTCG---CAA 480
consensus_6253#0      ATTTAAGGTGAAACCAT--TCTACTTTAGAATTTTCAATATGCAGAGGGATTAAAGCCAA 1362
consensus_6253#3      ------------------------------------------------------------
                                                                                  

consensus_6253#1      CTTCACCTGACCTTTTTTTTTTTGTCCAATTGCTGAGTGAAAACATATGTGATGTCTCAA 1414
consensus_6253#2      TTTCACCTGACCTTTTTTTTTTTGTTCAATTGCTGAGGGAAATCATATGTGATGCCTCAA 540
consensus_6253#0      TCCCTTTTTGGAACTTTCAATTCATTTAACTGTTCATCCAAAGGGGCTGTGCCAAAT-AC 1421
consensus_6253#3      ------------------------------------------------------------
                                                                                  

consensus_6253#1      GTCTCTCT--ACCAATGCC---AGCTTTCAAT--CCAGAACTTGAACATGAATTGCAAAA 1467
consensus_6253#2      GTCTCTCTCCACCAATGCC---AGATTTCAAT--CCAGAACTTGAACATGAATAGCAAAA 595
consensus_6253#0      ACATGCCCAAGCAAATGCTTAGAGATTTGGATAACCTGAAAGCAAAGGAGAATCTTTCAT 1481
consensus_6253#3      ------------------------------------------------------------
                                                                                  

consensus_6253#1      CTGTAAATGAATTT-GCTAGGAATTTACC-ATTTCAAGAAATCTTGGAGT---------- 1515
consensus_6253#2      TTGTAAATGAATTT-GCTAGGAATTTACC-ATTTCAAGAAATCTTGGAATATTAACAGGC 653
consensus_6253#0      TTTCACATCAATTAAGATTGAAACCAATGGACATGCAAGGATGGTTGAATTTTGGGGCAC 1541
consensus_6253#3      ------------------------------------------------------------
                                                                                  

consensus_6253#1      ------------------------------------------------------------
consensus_6253#2      ACAAATTGCGGAGTAAAAAAAAAA------------------------------------ 677
consensus_6253#0      TTTTTTCATGCACATTGTTCATTTGTTTCTTTTGAATGCGTTATTGCAGGAGGATTCAGA 1601
consensus_6253#3      ------------------------------------------------------------
                                                                                  

consensus_6253#1      ------------------------------------------------------------
consensus_6253#2      ------------------------------------------------------------
consensus_6253#0      TGCGATGGAGTCGTAATACATCAAGAGAATCGTTTGTTGTCCTTGTGGCAGAATTCGCAA 1661
consensus_6253#3      ------------------------------------------------------------
                                                                                  

consensus_6253#1      -----------------------------------------------------------
consensus_6253#2      -----------------------------------------------------------
consensus_6253#0      GTCAAGGCTAACCATATAATGCTTATTTGTTCTGGTTTTTAAGAGCCTGTTCTTTATGG 1720
consensus_6253#3      -----------------------------------------------------------
                                                                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)