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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6257#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1120 fasta sequence
[GATTCAATCTTCAGTGTCACTGGTAACAAGATCAATTGAGTGCCTGCAAGCTTGTGAAAACACTTCAGTTTCAGCTGAAGGACAACTTGAGAGAGCAATGGGATGGGCTTGTGCTGGTCCAAATACTTCTGGAGCAGGCAGTTCAACCACAAAGGCTTCAGGAATCCCATCTGAATTTCATGATCATCTGTTAAAAAGGAGGAAATTGCTTTGGGTCATCCAAGAACAGGCATCTGATCTTGCTAACATCTGCACATCTGTTTTGGAGTTTGAAGGATCGAGAGACGGAATTTACCTTATTCCTGAGGATAAATCTTCCGGACAATCTACTGACAGAGGCAGGACATGGCAGCAAACTTTCTTGAATCTCCTGACACGTCTAGATGCAGCATATCGTTCTTTCACATGTGCAGAACAAGAGTGGAAACTCAGTCAGTTCAACATGGAAAGTGCTGGGAAAAGCTTGTATTCAGTAACCAATCAGCTCTCTGTAGTCTCTTCGAGAGCAAAATCTGCTTTAGTTAATCTACAGGATACTCTTGTGTCCATGTATGAACGAGCTTCTGAAGTCACTGCATCATTATCTGGGTTCAAACATGTTTCACAGGATCGCACTGCTTTGACTTCTGAATGTGGTTCGTTACTAGAGGAGGTTTTGGCAATAGCAGAGGGGTTGCATGATGTATATATCGTGGGAAAGGAAGCTGCTGTTATGCACAATTCAATTATGTCCAATCTTTCAAAGGCAAACACAATTTTACTTCCACTCGAAGCCTCATTGTCTGCTGATTTAGCTGTTATGTCTGAAGCAATCTCAAAGGAAAGAGAGAAGAATAATACCAGCATGCCTCTTATTCATGGAAAGGCATTATACCAATCTTACATTATTAGAATACGGGATGCTTACAAAAATTTAGAACCTCTGGTGCCCCCACTTGCTGACGATGCGAAGGAGTTGCACTCCTTGATGACTAAGCTTGGACGCCTTTCTAGTATTCATGCAGGGAGCCTTCATAAGGCTCTAGAAGTTCTTGGTGAAAGTGAAACTGTGAAGTCACAGGATATGCCTTCAACACATGCAGATATTTTGCAGAGTGATTCATNCATTGAGAAGGATAAA]
[+] EMBL CB640317 [GATTCAATCTTCAGTGTCACTGGTAACAAGATCAATTGAGTGCCTGCAAGCTTGTGAAAACACTTCAGTTTCAGCTGAAGGACAACTTGAGAGAGCAATGGGATGGGCTTGTGCTGGTCCAAATACTTCTGGAGCAGGCAGTTCAACCACAAAGGCTTCAGGAATCCCATCTGAATTTCATGATCATCTGTTAAAAAGGAGGAAATTGCTTTGGGTCATCCAAGAACAGGCATCTGATCTTGCTAACATCTGCACATCTGTTTTGGAGTTTGAAGGATCGAGAGACGGAATTTACCTTATTCCTGAGGATAAATCTTCCGGACAATCTACTGACAGAGGCAGGACATGGCAGCAAACTTTCTTGAATCTCCTGACACGTCTAGATGCAGCATATCGTTCTTTCACATGTGCAGAACAAGAGTGGAAACTCAGTCAGTTCAACATGGAAAGTGCTGGGAAAAGCTTGTATTCAGTAACCAATCAGCTCTCTGTAGTCTCTTCGAGAGCAAAATCTGCTTTAGTTAATCTACAGGATACTCTTGTGTCCATGTATGAACGAGCTTCTGAAGTCACTGCATCATTATCTGGGTTCAAACATGTTTCACAGGATCGCACTGCTTTGAC ]
[+] EMBL CB666951 [ CGTCTAGATGCAGCATATCGTTCTTTCACATGTGCAGAACAAGAGTGGAAACTCAGTCAGTTCAACATGGAAAGTGCTGGGAAAAGCTTGTATTCAGTAACCAATCAGCTCTCTGTAGTCTCTTCGAGAGCAAAATCTGCTTTAGTTAATCTACAGGATACTCTTGTGTCCATGTATGAACGAGCTTCTGAAGTCACTGCATCATTATCTGGGTTCAAACATGTTTCACAGGATCGCACTGCTTTGACTTCTGAATGTGGTTCGTTACTAGAGGAGGTTTTGGCAATAGCAGAGGGGTTGCATGATGTATATATCGTGGGAAAGGAAGCTGCTGTTATGCACAATTCAATTATGTCCAATCTTTCAAAGGCAAACACAATTTTACTTCCACTCGAAGCCTCATTGTCTGCTGATTTAGCTGTTATGTCTGAAGCAATCTCAAAGGAAAGAGAGAAGAATAATACCAGCATGCCTCTTATTCATGGAAAGGCATTATACCAATCTTACATTATTAGAATACGGGATGCTTACAAAAATTTAGAACCTCTGGTGCCCCCACTTGCTGACGATGCGAAGGAGTTGCACTCCTTGATGACTAAGCTTGGACGCCTTTCTAGTATTCATGCAGGGAGCCTTCATAAGGCTCTAGAAGTTCTTGGTGAAAGTGAAACTGTGAAGTCACAGGATATGCCTTCAACACATGCAGATATTTTGCAGAGTGATTCATNCATTGAGAAGGATAAA]
consensusID : consensus_6257#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence
[AATTTGAACGATACAAGGCTCTAGAAGTTCTTGGTGAAAGTGAAACTGTAAGTCACAGGATATGCCTTCAACACATGCAGATATTTTGCAGAGTGATTCATCAATTGAGAAGGATAAAGGTTCTTCTGGGAGCAGGGAAGGTGGATCTCAGGATTTAGTAACGACCACTGATCTTTCTTTACAAGATGAATGCTGGATTTCTCCTCCCGAACACTCATATACNAGCAGTTCTGGATATACCACAGAGTTAACCCAGATTACTTCTTCTGAGAACATAGAGAATATGGATCCCTTATTGGTTGACAGGCCTGTGATAGAAGCTCCTGGTGCTAATGATCAGGANAGAGGGGCTGATTCGGAATCAGATTCAAGTAGCAATAAGCAGTTGTTCATAAACNATGTTACATTGACGAATGTTAATAGTGTTGATGAGGTTGAAATCTCATTGTCAAAGGAGAGGAAATCTGAANATGAGAATACAAATTTGCCATTCANACAGATTAGAGGACAAGAATGTGATAACAGTGATCCTAAATCCTATCCAGATTCTGTGACTCGATTGACAAGAGGTAAAAATCCTTTTGCTNTGTCCATACTGAAAGCAGTGGAGCA]
[+] EMBL CA754455 [AATTTGAACGATACAAGGCTCTAGAAGTTCTTGGTGAAAGTGAAACTGTAAGTCACAGGATATGCCTTCAACACATGCAGATATTTTGCAGAGTGATTCATCAATTGAGAAGGATAAAGGTTCTTCTGGGAGCAGGGAAGGTGGATCTCAGGATTTAGTAACGACCACTGATCTTTCTTTACAAGATGAATGCTGGATTTCTCCTCCCGAACACTCATATACNAGCAGTTCTGGATATACCACAGAGTTAACCCAGATTACTTCTTCTGAGAACATAGAGAATATGGATCCCTTATTGGTTGACAGGCCTGTGATAGAAGCTCCTGGTGCTAATGATCAGGANAGAGGGGCTGATTCGGAATCAGATTCAAGTAGCAATAAGCAGTTGTTCATAAACNATGTTACATTGACGAATGTTAATAGTGTTGATGAGGTTGAAATCTCATTGTCAAAGGAGAGGAAATCTGAANATGAGAATACAAATTTGCCATTCANACAGATTAGAGGACAAGAATGTGATAACAGTGATCCTAAATCCTATCCAGATTCTGTGACTCGATTGACAAGAGGTAAAAATCCTTTTGCTNTGTCCATACTGAAAGCAGTGGAGCA]
consensusID : consensus_6257#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 318 fasta sequence
[AATACTTCTGGAGCAGGCAGTTCAACCACAAAGGCTTCAGGAATCCCATCTGAATTTCATGATCATCTGTTAATACTTCTGGAGCAGGCAGTTCAACCACAAAGGCTTCAGGAATCCCATCTGAATTTCATGATCATCTGTTAAAAAGGAGGAAATTGCTTTGGGTCATCCAAGAACAGGCATCTGATCTTGCTAACATCTGCACATCTGTTTTGGAGTTTGAAGGATCGAGAGACGGAATTTACCTTATTCCTGAGGATAAATCTTCCGGACAATCTACTGACAGAGGCAGGACATGGCAGCAAACTTTCTTGAATC]
[+] EMBL D43403 [AATACTTCTGGAGCAGGCAGTTCAACCACAAAGGCTTCAGGAATCCCATCTGAATTTCATGATCATCTGTTAATACTTCTGGAGCAGGCAGTTCAACCACAAAGGCTTCAGGAATCCCATCTGAATTTCATGATCATCTGTTAAAAAGGAGGAAATTGCTTTGGGTCATCCAAGAACAGGCATCTGATCTTGCTAACATCTGCACATCTGTTTTGGAGTTTGAAGGATCGAGAGACGGAATTTACCTTATTCCTGAGGATAAATCTTCCGGACAATCTACTGACAGAGGCAGGACATGGCAGCAAACTTTCTTGAATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6257#0 GATTCAATCTTCAGTGTCACTGGTAACAAGATCAATTGAGTGCCTGCAAGCTTGTGA--- 57
consensus_6257#2 ----------------------------------------------AATACTTCTGG--- 11
consensus_6257#1 ------AATTTGAACGATACAAGGCTCTAGAAGTTCTTGGTGAAAGTGAAACTGTAAGTC 54
* *
consensus_6257#0 AAACACTTCAGTTTCAGCTGAAGGACA-ACTTGAGAGAGCAATGGGATGGGCTTGTGCTG 116
consensus_6257#2 AGCAGG--CAGTTCAACCACAAAGGC---TTCAGGAATCCCATCTGAATTTCATGATCAT 66
consensus_6257#1 ACAGGATATGCCTTCAACACATGCAGATATTTTGCAGAGTGAT-TCATCAATTGAGAAGG 113
* * * * * * * ** *
consensus_6257#0 GTCCAAATACTTCTGG-AGCAGGCA-GTTCAACCACAAAGGCTTCAGGAATCCCATCTGA 174
consensus_6257#2 CTGTTAATACTTCTGG-AGCAGGCA-GTTCAACCACAAAGGCTTCAGGAATCCCATCTGA 124
consensus_6257#1 ATAAAGGTTCTTCTGGGAGCAGGGAAGGTGGATCTC--AGGATTTAGTAACGACCACTGA 171
* * ******* ****** * * * * * * *** ** ** ** * ****
consensus_6257#0 ATTTCATGATCATCTGTTAAAAAGGAGGAAATTGCTTTGGGTCATCCAAGAACAGGCA-- 232
consensus_6257#2 ATTTCATGATCATCTGTTAAAAAGGAGGAAATTGCTTTGGGTCATCCAAGAACAGGCA-- 182
consensus_6257#1 TCTTTCT--TTACAAGATGAATGCTGGATTTCTCCTCCCGAACACTCATATACNAGCAGT 229
** * * * * * ** * * ** * ** ** ** ***
consensus_6257#0 TCTGATCTTGCTAACATCTGCACATCTGTTTTGGAGTTTGAAGGATCGAGAGACGGAATT 292
consensus_6257#2 TCTGATCTTGCTAACATCTGCACATCTGTTTTGGAGTTTGAAGGATCGAGAGACGGAATT 242
consensus_6257#1 TCTGGATATACCA-CAGAGTTAACCCAGATTACTTCTTCTGAGAACATAGAGAATATGGA 288
**** * * * ** * * * ** ** ** * *****
consensus_6257#0 TACCTTATTCCTGAGGATAAATCTTCCGGACAATCTACTGAC----AGAGGCAGGACATG 348
consensus_6257#2 TACCTTATTCCTGAGGATAAATCTTCCGGACAATCTACTGAC----AGAGGCAGGACATG 298
consensus_6257#1 TCCCTTATT--GGTTGACAGGCCTGTGATAGAAGCTCCTGGTGCTAATGATCAGGANAGA 346
* ******* * ** * ** * ** ** *** * ***** *
consensus_6257#0 GCAGCAAACTTT---CTTGAATCTCCTGACA-CGTCTAGATGCAGCATATCGTTCTTTCA 404
consensus_6257#2 GCAGCAAACTTT---CTTGAATC------------------------------------- 318
consensus_6257#1 GGGGCTGATTCGGAATCAGATTCAAGTAGCAATAAGCAGTTGTTCATAAACNATGTTACA 406
* ** * * ** **
consensus_6257#0 CATGTGCAGAACAAGAGTGGAAACTCAGTCAGTTCAACATGGAAAGTGCTGGGAAAAGCT 464
consensus_6257#2 ------------------------------------------------------------
consensus_6257#1 TTGACGAATGTTAATAGTGTTGATGAGGTTGAAATCTCATTGTCAAAGGAGAGGAAATCT 466
consensus_6257#0 TGTATTCAGTA-ACCAATCAGCTCTCTGTAGTCTCTTCGAGAGCAAAATCTGCTTTAGTT 523
consensus_6257#2 ------------------------------------------------------------
consensus_6257#1 GAANATGAGAATACAAATTTGCCATTCANACAGATTAGAGGACAAGAATGTGATAACAGT 526
consensus_6257#0 AATCTACAGGATACTCTTGTGTCCATGTATGAACGAGCTTCTGAAGTCACTGCATCATTA 583
consensus_6257#2 ------------------------------------------------------------
consensus_6257#1 GATCCTAAATCCTATCCAGATTCTGTGACT---CGATTGACAAGAGGTAAAAATCCTTTT 583
consensus_6257#0 TCTGGGTTCAAACATGTTTCACAGGATCGCACTGCTTTGACTTCTGAATGTGGTTCGTTA 643
consensus_6257#2 ------------------------------------------------------------
consensus_6257#1 GCTNTGTCCATACTGAAAGCAGTGGAGCA------------------------------- 612
consensus_6257#0 CTAGAGGAGGTTTTGGCAATAGCAGAGGGGTTGCATGATGTATATATCGTGGGAAAGGAA 703
consensus_6257#2 ------------------------------------------------------------
consensus_6257#1 ------------------------------------------------------------
consensus_6257#0 GCTGCTGTTATGCACAATTCAATTATGTCCAATCTTTCAAAGGCAAACACAATTTTACTT 763
consensus_6257#2 ------------------------------------------------------------
consensus_6257#1 ------------------------------------------------------------
consensus_6257#0 CCACTCGAAGCCTCATTGTCTGCTGATTTAGCTGTTATGTCTGAAGCAATCTCAAAGGAA 823
consensus_6257#2 ------------------------------------------------------------
consensus_6257#1 ------------------------------------------------------------
consensus_6257#0 AGAGAGAAGAATAATACCAGCATGCCTCTTATTCATGGAAAGGCATTATACCAATCTTAC 883
consensus_6257#2 ------------------------------------------------------------
consensus_6257#1 ------------------------------------------------------------
consensus_6257#0 ATTATTAGAATACGGGATGCTTACAAAAATTTAGAACCTCTGGTGCCCCCACTTGCTGAC 943
consensus_6257#2 ------------------------------------------------------------
consensus_6257#1 ------------------------------------------------------------
consensus_6257#0 GATGCGAAGGAGTTGCACTCCTTGATGACTAAGCTTGGACGCCTTTCTAGTATTCATGCA 1003
consensus_6257#2 ------------------------------------------------------------
consensus_6257#1 ------------------------------------------------------------
consensus_6257#0 GGGAGCCTTCATAAGGCTCTAGAAGTTCTTGGTGAAAGTGAAACTGTGAAGTCACAGGAT 1063
consensus_6257#2 ------------------------------------------------------------
consensus_6257#1 ------------------------------------------------------------
consensus_6257#0 ATGCCTTCAACACATGCAGATATTTTGCAGAGTGATTCATNCATTGAGAAGGATAAA 1120
consensus_6257#2 ---------------------------------------------------------
consensus_6257#1 ---------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||