cluster # 626

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Oryza sativa
cluster # 626 cluster # 626 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_626#0 length = 588 sequences # 1

consensus_626#1 length = 390 sequences # 1

consensusID : consensus_626#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 588
fasta sequence

                              [AAGGAAGGGGGGTGGTGTGAGCTCGCTGATCCATCCATATATAACGCATGTCCAGAGCATAAGGTATTGAGATGCATTCATGTCGGCCTGATGTGCGTACAGGAGAGTCCCATCAATCGGCCTACCATGACCGAGATAATTTCAGCGCTTGATAACGAAAGCACCACCCTGCCTGAACCGAAGCAGCCTGCCTTCGTCTCCGCTGGGATTTGGACTGAAGCTGGTGTTCACGGAGGAACACACTCCATAAACGGAATGACAATTTCCGACACGCAAGGTAGATAGTATCATGTCAATTAATTGGTGCCTCTTAATTGAACCTTCCTGATGTGAAACTCTAAAGAACTTAGCAACCGGGTATGCTTTGCAAGGGTGGTCAGAGGTGTATCTATACGGTATCTACATAGAGCTTAGGGGGGTAGGGGGGTGGATACAATTTTCCCGAAAACAGCACACCGAACCGAAACAACGGTTTCCTCAGTGTTTGGAGTGACGTTCGGTTTTCCTTTTTACATACTTGGGTGATCGGTGTGTGGCTCGGCTTTTGTTAAATTGAAACCGATAATAACGTATAAATCGAGGTACTAT]

[+] EMBL CA765415             [AAGGAAGGGGGGTGGTGTGAGCTCGCTGATCCATCCATATATAACGCATGTCCAGAGCATAAGGTATTGAGATGCATTCATGTCGGCCTGATGTGCGTACAGGAGAGTCCCATCAATCGGCCTACCATGACCGAGATAATTTCAGCGCTTGATAACGAAAGCACCACCCTGCCTGAACCGAAGCAGCCTGCCTTCGTCTCCGCTGGGATTTGGACTGAAGCTGGTGTTCACGGAGGAACACACTCCATAAACGGAATGACAATTTCCGACACGCAAGGTAGATAGTATCATGTCAATTAATTGGTGCCTCTTAATTGAACCTTCCTGATGTGAAACTCTAAAGAACTTAGCAACCGGGTATGCTTTGCAAGGGTGGTCAGAGGTGTATCTATACGGTATCTACATAGAGCTTAGGGGGGTAGGGGGGTGGATACAATTTTCCCGAAAACAGCACACCGAACCGAAACAACGGTTTCCTCAGTGTTTGGAGTGACGTTCGGTTTTCCTTTTTACATACTTGGGTGATCGGTGTGTGGCTCGGCTTTTGTTAAATTGAAACCGATAATAACGTATAAATCGAGGTACTAT]




>consensus_626#0
AAGGAAGGGGGGTGGTGTGAGCTCGCTGATCCATCCATATATAACGCATGTCCAGAGCAT
AAGGTATTGAGATGCATTCATGTCGGCCTGATGTGCGTACAGGAGAGTCCCATCAATCGG
CCTACCATGACCGAGATAATTTCAGCGCTTGATAACGAAAGCACCACCCTGCCTGAACCG
AAGCAGCCTGCCTTCGTCTCCGCTGGGATTTGGACTGAAGCTGGTGTTCACGGAGGAACA
CACTCCATAAACGGAATGACAATTTCCGACACGCAAGGTAGATAGTATCATGTCAATTAA
TTGGTGCCTCTTAATTGAACCTTCCTGATGTGAAACTCTAAAGAACTTAGCAACCGGGTA
TGCTTTGCAAGGGTGGTCAGAGGTGTATCTATACGGTATCTACATAGAGCTTAGGGGGGT
AGGGGGGTGGATACAATTTTCCCGAAAACAGCACACCGAACCGAAACAACGGTTTCCTCA
GTGTTTGGAGTGACGTTCGGTTTTCCTTTTTACATACTTGGGTGATCGGTGTGTGGCTCG
GCTTTTGTTAAATTGAAACCGATAATAACGTATAAATCGAGGTACTAT

consensusID : consensus_626#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 390
fasta sequence

                              [GAGGAACACACTCCAGACGGAATGACAANTTCCGACACGCAAGTTAGANTAGTATCATGGTCAAGTTTATTGAGGCCTCTGTAATTGAACCTTCCTGATGTGAAACTTTATATAGAACTTATCATACCGGGTATGGTGTTTGCAAGGTCGGTCAGAGTGTGTATCATATACGGNATCTACATAGAGCTTAGAGGGGTAGGTACCGTAGGGTGTGGGTTACAATTTTCCCGAATAACCGCACACCGATACCGAAACAACAGGTTTCTCGGTGTTTGGAGTGACGTTCGGTNTTCCTTTTTACATACTTGGGTGATCGGTGTGTGGCTCGTTTTGNATATACCGTATAAACCGAGGTCTATATTGTAACCTNGCACATCAACAAAAAAAAAA]

[+] EMBL BI806210             [GAGGAACACACTCCAGACGGAATGACAANTTCCGACACGCAAGTTAGANTAGTATCATGGTCAAGTTTATTGAGGCCTCTGTAATTGAACCTTCCTGATGTGAAACTTTATATAGAACTTATCATACCGGGTATGGTGTTTGCAAGGTCGGTCAGAGTGTGTATCATATACGGNATCTACATAGAGCTTAGAGGGGTAGGTACCGTAGGGTGTGGGTTACAATTTTCCCGAATAACCGCACACCGATACCGAAACAACAGGTTTCTCGGTGTTTGGAGTGACGTTCGGTNTTCCTTTTTACATACTTGGGTGATCGGTGTGTGGCTCGTTTTGNATATACCGTATAAACCGAGGTCTATATTGTAACCTNGCACATCAACAAAAAAAAAA]




>consensus_626#1
GAGGAACACACTCCAGACGGAATGACAANTTCCGACACGCAAGTTAGANTAGTATCATGG
TCAAGTTTATTGAGGCCTCTGTAATTGAACCTTCCTGATGTGAAACTTTATATAGAACTT
ATCATACCGGGTATGGTGTTTGCAAGGTCGGTCAGAGTGTGTATCATATACGGNATCTAC
ATAGAGCTTAGAGGGGTAGGTACCGTAGGGTGTGGGTTACAATTTTCCCGAATAACCGCA
CACCGATACCGAAACAACAGGTTTCTCGGTGTTTGGAGTGACGTTCGGTNTTCCTTTTTA
CATACTTGGGTGATCGGTGTGTGGCTCGTTTTGNATATACCGTATAAACCGAGGTCTATA
TTGTAACCTNGCACATCAACAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_626#0      AAGGAAGGGGGGTGGTGTGAGCTCGCTGATCCATCCATATATAACGCATGTCCAGAGCAT 60
consensus_626#1      ------------------------------------------------------------
                                                                                 

consensus_626#0      AAGGTATTGAGATGCATTCATGTCGGCCTGATGTGCGTACAGGAGAGTCCCATCAATCGG 120
consensus_626#1      ------------------------------------------------------------
                                                                                 

consensus_626#0      CCTACCATGACCGAGATAATTTCAGCGCTTGATAACGAAAGCACCACCCTGCCTGAACCG 180
consensus_626#1      ------------------------------------------------------------
                                                                                 

consensus_626#0      AAGCAGCCTGCCTTCGTCTCCGCTGGGATTTGGACTGAAGCTGGTGTTCACGGAGGAACA 240
consensus_626#1      ----------------------------------------------------GAGGAACA 8
                                                                         ********

consensus_626#0      CACTCCATAAACGGAATGACAATTTCCGACACGCAAGGTAGAT-AGTATCATG-TCAA-T 297
consensus_626#1      CACTCCA--GACGGAATGACAANTTCCGACACGCAAGTTAGANTAGTATCATGGTCAAGT 66
                     *******   ************ ************** ****  ********* **** *

consensus_626#0      TAATTGGTGCCTCT-TAATTGAACCTTCCTGATGTGAAACTCTAAA--GAACTTAGCA-A 353
consensus_626#1      TTATTGAGGCCTCTGTAATTGAACCTTCCTGATGTGAAACTTTATATAGAACTTATCATA 126
                     * ****  ****** ************************** ** *  ******* ** *

consensus_626#0      CCGGGTATGCT--TTGCAAGGGTGGTCAGAG-GTGTATC-TATACGGTATCTACATAGAG 409
consensus_626#1      CCGGGTATGGTGTTTGCAAGGTCGGTCAGAGTGTGTATCATATACGGNATCTACATAGAG 186
                     ********* *  ********  ******** ******* ******* ************

consensus_626#0      CTTAGGGGGGTAGG--------GGGGTGGAT-ACAATTTTCCCGAA-AACAGCACACCGA 459
consensus_626#1      CTTAGAGGGGTAGGTACCGTAGGGTGTGGGTTACAATTTTCCCGAATAACCGCACACCGA 246
                     ***** ********        ** **** * ************** *** *********

consensus_626#0      -ACCGAAACAACGGTTTCCTCAGTGTTTGGAGTGACGTTCGGTTTTCCTTTTTACATACT 518
consensus_626#1      TACCGAAACAACAGGTTTCTCGGTGTTTGGAGTGACGTTCGGTNTTCCTTTTTACATACT 306
                      *********** * ** *** ********************* ****************

consensus_626#0      TGGGTGATCGGTGTGTGGCTCGGCTTTTGTTAA--ATTGAAACCGATAATAACGT-ATAA 575
consensus_626#1      TGGGTGATCGGTGTGTGGCTCGTTTTGNATATACCGTATAAACCGAGGTCTATATTGTAA 366
                     **********************  **   *  *   *  *******     *  *  ***

consensus_626#0      ATCGAGGTACTAT----------- 588
consensus_626#1      CCTNGCACATCAACAAAAAAAAAA 390
                             *  *