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Oryza sativa
cluster # 6266 cluster # 6266       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6266#0 length = 1320 sequences # 3  
consensus_6266#1 length = 553 sequences # 1  

consensusID : consensus_6266#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1320
fasta sequence
                              [ACAAACAGACCGCACAACCCGACGGCGCAGACGCCACGCCGGGGGGCGCCGCCGCCGCCGCCGCCGCCGCCAACGCGACGAACCGCGGGTACAAGAAGGCAGGGAAGCCGAGACGAGGGGCTCCAATGGCGCTCCGCCGCGTGCTCCTCTTCGTCAAGCCCTTCGACGTCTACCCTCCCCGCCCGCTCGCCGCCGCCGCCTCCTCGCCTCCGCCCCCGCCGCCGCCGCTGCGTGTATCCAATCCCAAGGTCTTGAATTATCTGGATGATAGGTGCAGAGTTCACAAGGAAACAATCAATCTCTGCAAAAGCGTACTGCAGCGTAAATCCATTGACTGGATTTCAGTGCAGCGAAATGATATGTCTAATCCAATACATGATGTGGATCTTGTGATTTCTGTTGGTGGTGATGGCACTCTTCTACGGGCTAGCCATTTTTTGAATAGCTCAATTCCCGTTTTAGGTGTTAATTCAGACCCTACTTGTCCTGATGAGGTTGATGAATTAACTGATGAATTTGATGCAAGGAGAAGCACAGGACATCTTTGTGCAGCTACGGCTGCAAACTTTGAGCAGATACTTGATGCAACCCTTGATGGTAGTAGGCAACCTTCAGAGTTGTCAAGGATCTCAGTGAAACTAAATGGACTTCAGCTACCAACTTATGCTCTGAATGATATATTGGTCTCACACCCCTGTCCAGCAAGTGTATCACGATTCTCATTTAGGAAGAGAAGCAACACTGGAGAGAGCTCGCATTTAATTAATTGCAGGTCAAGTGGTCTCAGGGTTGCAACGCCTGCTGGATCAACTGCTGCTATGCTATCGGCAGGAGGATTCGTGATGCCAATATCAAGCCATGAGCTTCAGTATATGATAAGGGAGCCCATTTCTCCAAGGGATGCTGACAAGCCACTGCTGCATGGGTTAGTTAAGCAAGGTCAACACATACTTGTCGTTTGGTACAATGAGGAAGGCGCTGTTTATTTTGATGGTTCACATGTAATGCATTCAATTCAGCATGGAGATACACTGGAGATCTCCTCTGATGCTCCAATCTTGAAAGTTATTTTGCCAGAAAATCTGTTAAAGCAGGGATCTTAGTAATGCAATAACATTATCATCGTTATTGTGCTTGTTAATATGGTATGATGTTTGACACTTGAGTTTCTGAGAACTGTCTGATATAGATGCGTATTTATGTAATGACAGAGTTAACTTATGCTATGAAATAAAATAGTGGATGCTAATTTTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK073719             [  AAACAGACCGCACAACCCGACGGCGCAGACGCCACGCCGGGGGGCGCCGCCGCCGCCGCCGCCGCCGCCAACGCGACGAACCGCGGGTACAAGAAGGCAGGGAAGCCGAGACGAGGGGCTCCAATGGCGCTCCGCCGCGTGCTCCTCTTCGTCAAGCCCTTCGACGTCTACCCTCCCCGCCCGCTCGCCGCCGCCGCCTCCTCGCCTCCGCCCCCGCCGCCGCCGCTGCGTGTATCCAATCCCAAGGTCTTGAATTATCTGGATGATAGGTGCAGAGTTCACAAGGAAACAATCAATCTCTGCAAAAGCGTACTGCAGCGTAAATCCATTGACTGGATTTCAGTGCAGCGAAATGATATGTCTAATCCAATACATGATGTGGATCTTGTGATTTCTGTTGGTGGTGATGGCACTCTTCTACGGGCTAGCCATTTTTTGAATAGCTCAATTCCCGTTTTAGGTGTTAATTCAGACCCTACTTGTCCTGATGAGGTTGATGAATTAACTGATGAATTTGATGCAAGGAGAAGCACAGGACATCTTTGTGCAGCTACGGCTGCAAACTTTGAGCAGATACTTGATGCAACCCTTGATGGTAGTAGGCAACCTTCAGAGTTGTCAAGGATCTCAGTGAAACTAAATGGACTTCAGCTACCAACTTATGCTCTGAATGATATATTGGTCTCACACCCCTGTCCAGCAAGTGTATCACGATTCTCATTTAGGAAGAGAAGCAACACTGGAGAGAGCTCGCATTTAATTAATTGCAGGTCAAGTGGTCTCAGGGTTGCAACGCCTGCTGGATCAACTGCTGCTATGCTATCGGCAGGAGGATTCGTGATGCCAATATCAAGCCATGAGCTTCAGTATATGATAAGGGAGCCCATTTCTCCAAGGGATGCTGACAAGCCACTGCTGCATGGGTTAGTTAAGCAAGGTCAACACATACTTGTCGTTTGGTACAATGAGGAAGGCGCTGTTTATTTTGATGGTTCACATGTAATGCATTCAATTCAGCATGGAGATACACTGGAGATCTCCTCTGATGCTCCAATCTTGAAAGTTATTTTGCCAGAAAATCTGTTAAAGCAGGGATCTTAGTAATGCAATAACATTATCATCGTTATTGTGCTTGTTAATATGGTATGATGTTTGACACTTGAGTTTCTGAGAACTGTCTGATATAGATGCGTATTTATGTAATGACAGAGTTAACTTATGCTATGAAATAAAATAGTGGATGC                                                                          ]
[+] EMBL BP185052             [acgaggAGACCGCACAACCCGACGGCGCAGACGCCACGCCGGGGGGCGCCGCCGCCGCCGCCGCCGCCGCCAACGCGACGAACCGCGGGTACAAGAAGGCAGGGAAGCCGAGACGAGGGGCTCCAATGGCGCTCCGCCGCGTGCTCCTCTTCGTCAAGCCCTTCGACGTCTACCCTCCCCGCCCGCTCGCCGCCGCCGCCTCCTCGCCTCCGCCCCCGCCGCCGCCGCTGCGTGTATCCAATCCCAAGGTCTTGAATTATCTGGATGATAGGTGCAGAGTTCACAAGGAAACAATCAATCTCTGCAAAAGCGTACTGCAGCGTAAATCCATTGACTGGATTTCAGTGCAGCGAAATGATATGTCTAATCCAATACATGATGTGGATCTTGTGATTTCTGTTGGTGGTGATGGCACTCTTCTACGGGCTAGCCATTTTTTGAATAGCTCAATTCCCGTTTTAGGTGTTAATTCAGACCCTACTTGTCCTGATGAGGTTGATGAATTAACTGATGAATTTGATGCAAGGAGAAGCACAGGACATCTTTGTGCAGCTACGGCTGCAAACTTTGAGCAGATACTTGATGCACCCCTTGATGGTAGTAGGCAACCTTCAGAGTTGTCAAGGATCTCAGTGAAACTAAATGGACTTCAGCTACCAACTTATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CF320309             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GCTTGTTAATATGGTATGATGTTTGACACTTGAGTTTCTGAGAACTGTCTGATATAGATGCGTATTTATGTAATGACAGAGTTAACTTATGCTATGAAATAAAATAGTGGATGCTAATTTTTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_6266#0 ACAAACAGACCGCACAACCCGACGGCGCAGACGCCACGCCGGGGGGCGCCGCCGCCGCCG CCGCCGCCGCCAACGCGACGAACCGCGGGTACAAGAAGGCAGGGAAGCCGAGACGAGGGG CTCCAATGGCGCTCCGCCGCGTGCTCCTCTTCGTCAAGCCCTTCGACGTCTACCCTCCCC GCCCGCTCGCCGCCGCCGCCTCCTCGCCTCCGCCCCCGCCGCCGCCGCTGCGTGTATCCA ATCCCAAGGTCTTGAATTATCTGGATGATAGGTGCAGAGTTCACAAGGAAACAATCAATC TCTGCAAAAGCGTACTGCAGCGTAAATCCATTGACTGGATTTCAGTGCAGCGAAATGATA TGTCTAATCCAATACATGATGTGGATCTTGTGATTTCTGTTGGTGGTGATGGCACTCTTC TACGGGCTAGCCATTTTTTGAATAGCTCAATTCCCGTTTTAGGTGTTAATTCAGACCCTA CTTGTCCTGATGAGGTTGATGAATTAACTGATGAATTTGATGCAAGGAGAAGCACAGGAC ATCTTTGTGCAGCTACGGCTGCAAACTTTGAGCAGATACTTGATGCAACCCTTGATGGTA GTAGGCAACCTTCAGAGTTGTCAAGGATCTCAGTGAAACTAAATGGACTTCAGCTACCAA CTTATGCTCTGAATGATATATTGGTCTCACACCCCTGTCCAGCAAGTGTATCACGATTCT CATTTAGGAAGAGAAGCAACACTGGAGAGAGCTCGCATTTAATTAATTGCAGGTCAAGTG GTCTCAGGGTTGCAACGCCTGCTGGATCAACTGCTGCTATGCTATCGGCAGGAGGATTCG TGATGCCAATATCAAGCCATGAGCTTCAGTATATGATAAGGGAGCCCATTTCTCCAAGGG ATGCTGACAAGCCACTGCTGCATGGGTTAGTTAAGCAAGGTCAACACATACTTGTCGTTT GGTACAATGAGGAAGGCGCTGTTTATTTTGATGGTTCACATGTAATGCATTCAATTCAGC ATGGAGATACACTGGAGATCTCCTCTGATGCTCCAATCTTGAAAGTTATTTTGCCAGAAA ATCTGTTAAAGCAGGGATCTTAGTAATGCAATAACATTATCATCGTTATTGTGCTTGTTA ATATGGTATGATGTTTGACACTTGAGTTTCTGAGAACTGTCTGATATAGATGCGTATTTA TGTAATGACAGAGTTAACTTATGCTATGAAATAAAATAGTGGATGCTAATTTTTGTAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_6266#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 553
fasta sequence
                              [TCCTGATGAGGTTAGTTCTTCAGATTATTGTCAAGAACCATATGATCCATGTTTGTCAAGTTGCTTTTGGCATGCTTCCAAGCAGACTGATGCTTACCTGTATGCTTGGTTAGGTTTATATATAGATTATTCCTTTGCAGGTTGATGAATTAACTGATGAATTTGATGCAAGGAGAAGCACAGGACATCTTTGTGCAGCTACGGCTGCAAACTTTGAGCAGATACTTGATGCAACCCTTGATGGTAGTAGGCAACCTTCAGAGTTGTCAAGGATCTCAGTGAAACTAAATGGACTTCAGCTACCAACTTATGCTCTGAATGATATATTGGTCTCACACCCCTGTCCAGCAAGTGTATCACGATTCTCATTTAGGAAGAGAAGCAACACTGGAGAGAGCTCGCATTTAATTAATTGCAGGTCAAGTGGTCTCAGGGTTGCAACGCCTGCTGGATCAACTGCTGCTATGCTATCGGCAGGAGGATTCGTGATGCCAATATCAAGCCATGAGCTTCAGTATATGATAAGGGAGCCCATTTCTCCAAGGGATGCTGA]

[+] EMBL CF323256             [TCCTGATGAGGTTAGTTCTTCAGATTATTGTCAAGAACCATATGATCCATGTTTGTCAAGTTGCTTTTGGCATGCTTCCAAGCAGACTGATGCTTACCTGTATGCTTGGTTAGGTTTATATATAGATTATTCCTTTGCAGGTTGATGAATTAACTGATGAATTTGATGCAAGGAGAAGCACAGGACATCTTTGTGCAGCTACGGCTGCAAACTTTGAGCAGATACTTGATGCAACCCTTGATGGTAGTAGGCAACCTTCAGAGTTGTCAAGGATCTCAGTGAAACTAAATGGACTTCAGCTACCAACTTATGCTCTGAATGATATATTGGTCTCACACCCCTGTCCAGCAAGTGTATCACGATTCTCATTTAGGAAGAGAAGCAACACTGGAGAGAGCTCGCATTTAATTAATTGCAGGTCAAGTGGTCTCAGGGTTGCAACGCCTGCTGGATCAACTGCTGCTATGCTATCGGCAGGAGGATTCGTGATGCCAATATCAAGCCATGAGCTTCAGTATATGATAAGGGAGCCCATTTCTCCAAGGGATGCTGA]


>consensus_6266#1 TCCTGATGAGGTTAGTTCTTCAGATTATTGTCAAGAACCATATGATCCATGTTTGTCAAG TTGCTTTTGGCATGCTTCCAAGCAGACTGATGCTTACCTGTATGCTTGGTTAGGTTTATA TATAGATTATTCCTTTGCAGGTTGATGAATTAACTGATGAATTTGATGCAAGGAGAAGCA CAGGACATCTTTGTGCAGCTACGGCTGCAAACTTTGAGCAGATACTTGATGCAACCCTTG ATGGTAGTAGGCAACCTTCAGAGTTGTCAAGGATCTCAGTGAAACTAAATGGACTTCAGC TACCAACTTATGCTCTGAATGATATATTGGTCTCACACCCCTGTCCAGCAAGTGTATCAC GATTCTCATTTAGGAAGAGAAGCAACACTGGAGAGAGCTCGCATTTAATTAATTGCAGGT CAAGTGGTCTCAGGGTTGCAACGCCTGCTGGATCAACTGCTGCTATGCTATCGGCAGGAG GATTCGTGATGCCAATATCAAGCCATGAGCTTCAGTATATGATAAGGGAGCCCATTTCTC CAAGGGATGCTGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6266#0      ACAAACAGACCGCACAACCCGACGGCGCAGACGCCACGCCGGGGGGCGCCGCCGCCGCCG 60
consensus_6266#1      ------------------------------------------------------------
                                                                                  

consensus_6266#0      CCGCCGCCGCCAACGCGACGAACCGCGGGTACAAGAAGGCAGGGAAGCCGAGACGAGGGG 120
consensus_6266#1      ------------------------------------------------------------
                                                                                  

consensus_6266#0      CTCCAATGGCGCTCCGCCGCGTGCTCCTCTTCGTCAAGCCCTTCGACGTCTACCCTCCCC 180
consensus_6266#1      ------------------------------------------------------------
                                                                                  

consensus_6266#0      GCCCGCTCGCCGCCGCCGCCTCCTCGCCTCCGCCCCCGCCGCCGCCGCTGCGTGTATCCA 240
consensus_6266#1      ------------------------------------------------------------
                                                                                  

consensus_6266#0      ATCCCAAGGTCTTGAATTATCTGGATGATAGGTGCAGAGTTCACAAGGAAACAATCAATC 300
consensus_6266#1      ------------------------------------------------------------
                                                                                  

consensus_6266#0      TCTGCAAAAGCGTACTGCAGCGTAAATCCATTGACTGGATTTCAGTGCAGCGAAATGATA 360
consensus_6266#1      -------------------------------------------------TCCTGATGAGG 11
                                                                        *   ****  

consensus_6266#0      TGTCTAATCCAATACATGAT-GTGGATCTTGTGATTTCTGTTGGTGGTGATGGCACTCTT 419
consensus_6266#1      TTAGTTCTTCAGATTATTGTCAAGAACCATATGATCCATGTTTGTCAAGTTGCTTTTGGC 71
                      *   *  * **    **  *   * * * * ****   **** **   * **    *   

consensus_6266#0      CTACGGGCTAGCCATTTTTTGAATAGCTCAATTCCCGTTTTAGGTGTTAATTCAGACCCT 479
consensus_6266#1      ATGCTTCCAAGCAGACTGATGCTTACCTGTATGCTTGGTT-AGGTTTATATATAGATTAT 130
                       * *   * ***    *  **  ** **  ** *  * ** **** *  **  ***   *

consensus_6266#0      ACTTGTCCTGATGAGGTTGATGAATTAACTGATGAATTTGATGCAAGGAGAAGCACAGGA 539
consensus_6266#1      TCCTTTGC-----AGGTTGATGAATTAACTGATGAATTTGATGCAAGGAGAAGCACAGGA 185
                       * * * *     ***********************************************

consensus_6266#0      CATCTTTGTGCAGCTACGGCTGCAAACTTTGAGCAGATACTTGATGCAACCCTTGATGGT 599
consensus_6266#1      CATCTTTGTGCAGCTACGGCTGCAAACTTTGAGCAGATACTTGATGCAACCCTTGATGGT 245
                      ************************************************************

consensus_6266#0      AGTAGGCAACCTTCAGAGTTGTCAAGGATCTCAGTGAAACTAAATGGACTTCAGCTACCA 659
consensus_6266#1      AGTAGGCAACCTTCAGAGTTGTCAAGGATCTCAGTGAAACTAAATGGACTTCAGCTACCA 305
                      ************************************************************

consensus_6266#0      ACTTATGCTCTGAATGATATATTGGTCTCACACCCCTGTCCAGCAAGTGTATCACGATTC 719
consensus_6266#1      ACTTATGCTCTGAATGATATATTGGTCTCACACCCCTGTCCAGCAAGTGTATCACGATTC 365
                      ************************************************************

consensus_6266#0      TCATTTAGGAAGAGAAGCAACACTGGAGAGAGCTCGCATTTAATTAATTGCAGGTCAAGT 779
consensus_6266#1      TCATTTAGGAAGAGAAGCAACACTGGAGAGAGCTCGCATTTAATTAATTGCAGGTCAAGT 425
                      ************************************************************

consensus_6266#0      GGTCTCAGGGTTGCAACGCCTGCTGGATCAACTGCTGCTATGCTATCGGCAGGAGGATTC 839
consensus_6266#1      GGTCTCAGGGTTGCAACGCCTGCTGGATCAACTGCTGCTATGCTATCGGCAGGAGGATTC 485
                      ************************************************************

consensus_6266#0      GTGATGCCAATATCAAGCCATGAGCTTCAGTATATGATAAGGGAGCCCATTTCTCCAAGG 899
consensus_6266#1      GTGATGCCAATATCAAGCCATGAGCTTCAGTATATGATAAGGGAGCCCATTTCTCCAAGG 545
                      ************************************************************

consensus_6266#0      GATGCTGACAAGCCACTGCTGCATGGGTTAGTTAAGCAAGGTCAACACATACTTGTCGTT 959
consensus_6266#1      GATGCTGA---------------------------------------------------- 553
                      ********                                                    

consensus_6266#0      TGGTACAATGAGGAAGGCGCTGTTTATTTTGATGGTTCACATGTAATGCATTCAATTCAG 1019
consensus_6266#1      ------------------------------------------------------------
                                                                                  

consensus_6266#0      CATGGAGATACACTGGAGATCTCCTCTGATGCTCCAATCTTGAAAGTTATTTTGCCAGAA 1079
consensus_6266#1      ------------------------------------------------------------
                                                                                  

consensus_6266#0      AATCTGTTAAAGCAGGGATCTTAGTAATGCAATAACATTATCATCGTTATTGTGCTTGTT 1139
consensus_6266#1      ------------------------------------------------------------
                                                                                  

consensus_6266#0      AATATGGTATGATGTTTGACACTTGAGTTTCTGAGAACTGTCTGATATAGATGCGTATTT 1199
consensus_6266#1      ------------------------------------------------------------
                                                                                  

consensus_6266#0      ATGTAATGACAGAGTTAACTTATGCTATGAAATAAAATAGTGGATGCTAATTTTTGTAAA 1259
consensus_6266#1      ------------------------------------------------------------
                                                                                  

consensus_6266#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1319
consensus_6266#1      ------------------------------------------------------------
                                                                                  

consensus_6266#0      A 1320
consensus_6266#1      -
                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)