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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6267#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1114 fasta sequence
[TTTTTTTTTTTAACAAACGTTGTTTGCCAATATATATATATATATAATATAATTATATATCCATTCACTAGCAAAGCAGGAGCAACGCCATCAGTCCCAGACAGCCCAGGCTCAGAGTAAAAAAAAAATCAGAAGATCACGATACTGGCGTATCAGCTACTACTATCTGCTATGGTAGCCAGCCGTCATGTGACACCACCACTGCCCAAGACATTTTCTGTGGCCTATCACCTGTACAACTAATCTGCGCGTTACTTATGCGTGCAGATTACCAGCAAAAACAAAACCCGTAATTAGTAGTATTGGATGCTCCCGCTCAGTAATAAAAGGTTCCTTCCTTCCTTCCGTATGTCTACCTATGATCCTTTCTCCTTTGTCGTACTAGTATGCTACGAGCTACTACTAACTAACACTGATGACAGTACTTGGCAACAAGGAGTTGCTGAAGATTAGTGGAATCTAATGCGCTTCTTCCTGGGAGTGTCATGAACTTGTGTCTTCTCACCATACATCCTCAGTTGTAGGTTCTCGAAGGCTTCTGACACCGCTTCAACCAGCTCGTGCTTCTTGGCGTAGACCCGGACAATTCTGTCCTGGTTGTACGCAGGTAGCAGGTGGCTGACCCGCTCATCTGTGATGGGGAACTTCTCATCGCAACCAAAATCCTTAAAGAACTTGATGCTTTCAAGGGGATTATCTTTTCCACGGGTCAAATCAATCTTAACATTGCTAACAGCAACATCTTCTTCCTTCAGCAGCACCTTGGAAGATTTCTGTGAACAAACTATGTCTTGTGCGGTTATATTCTTAAAGTGCTCCAGCTTGTCCTTTGGAAC-AGAATATTCATTGCAGAACTTATAGAGCTCTCTTCGGCGAATACGTTGAATGATCCCTTTTGCTTTGTTCAGTTCATCGTTGGGAGCAGTTTCAATGCTTTTAATGATCGTGTCATCTNACTTCCAGAAGTCCGCTGGATCTTGTGCATGCAAAGCTATTCCCAAGTATTCGTTAGCCTCAACAAGTGCATCCACAAGCATCAGTTCAACAGCCTTNACTTTCGCATGTGTATAGACAGTGCGGTGAAGATCAGCACGTGTCGTAAACAATTTATGGA]
[+] EMBL CF325787 [TTTTTTTTTTTAACAAACGTTGTTTGCCAATATATATATATATATAATATAATTATATATCCATTCACTAGCAAAGCAGGAGCAACGCCATCAGTCCCAGACAGCCCAGGCTCAGAGTAAAAAAAAAATCAGAAGATCACGATACTGGCGTATCAGCTACTACTATCTGCTATGGTAGCCAGCCGTCATGTGACACCACCACTGCCCAAGACATTTTCTGTGGCCTATCACCTGTACAACTAATCTGCGCGTTACTTATGCGTGCAGATTACCAGCAAAAACAAAACCCGTAATTAGTAGTATTGGATGCTCCCGCTCAGTAATAAAAGGTTCCTTCCTTCCTTCCGTATGTCTACCTATGATCCTTTCTCCTTTGTCGTACTAGTATGCTACGAGCTACTACTAACTAACACTGATGACAGTACTTGGCAACAAGGAGTTGCTGAAGATTAGTGGAATCTAATGCGCTTCTTCCTGGGAGTGTCATGAACTTGTGTCTTCTCACCATACATCCTCAGTTGTAGGTTCTCGAAGGCTTCTGACACCGCTTCAACCAGCTCGTGCTTCTTGGCGTAGACCCGGA ]
[-] EMBL CF323282 [ TATGCTACGAGCTACTACTAACTAACACTGATGACAGTACTTGGCAACAAGGAGTTGCTGAAGATTAGTGGAATCTAATGCGCTTCTTCCTGGGAGTGTCATGAACTTGTGTCTTCTCACCATACATCCTCAGTTGTAGGTTCTCGAAGGCTTCTGACACCGCTTCAACCAGCTCGTGCTTCTTGGCGTAGACCCGGACAATTCTGTCCTGGTTGTACGCAGGTAGCAGGTGGCTGACCCGCTCATCTGTGATGGGGAACTTCTCATCGCAACCAAAATCCTTAAAGAACTTGATGCTTTCAAGGGGATTATCTTTTCCACGGGTCAAATCAATCTTAACATTGCTAACAGCAACATCTTCTTCCTTCAGCAGCACCTTGGAAGATTTCTGTGAACAAACTATGTCTTGTGCGGTTATATTCTTAAAGTGCTCCAGCTTGTCCTTTGGAAC AGAATATTCATTGCAGAACTTATAGAGCTCTCTTCGGCGAATACGTTGAATGATCCCTTTTGCTTTGTTCAGTTCATCGTTGGGAGCAGTTTCAATGCTTTTAATGATCGTG ]
[-] EMBL D43345 [ nCTTAAAGTGCCCCAGCNTGNCCTTTGGAACAAGAATATTCATTGCAGAACTTATAGAGCTCTCTTCGGCGAATACGTTGAATGATCCCNTTTGCTTTGTTCAGTTCANCGTTGGGAGCAGTTTCAATGCTTTTAATGATCGTGTCATCTNACTTCCAGAAGTCCGCTGGATCTTGTGCATGCAAAGCTATTCCCAAGTATTCGTTAGCCTCAACAAGTGCATCCACAAGCATCAGTTCAACAGCCTTNACTTTCGCATGTGTATAGACAGTGCGGTGAAGATCAGCACGTGTCGTAAACAATTTATGGA]
consensusID : consensus_6267#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence
[ACCCCGGACAATTCTGTCCTGGTTGTACGCAGGTAGCAGGTGGCTGACCCGCTCCATCTGTGATGGGGAACTTCTCATCGGCAACCAAAATCCTTAAAGAACTTGATGCTGGGGATAGTAGATATGCAGACCAACAAAAGTAACAGGTCAGAATCTGATATGTCGCCCTAAGAAATATAAGAGTCTGAAAAGTGGGTTTATAAATCAAAAACCTTTCAAGGGGATTATCTTTTCCACGGGTCAAATCAATCTTAACATTGCTAACAGCAACATCTTCTTCCTTCAGCAGCACCTTGGAAGATTTCTGTGAACAAACTATGTCTTGTGCGGTTATATTCTTAAAGTGCTCCAGCTTGTCCTTTGGAACAGAATATTCATTGCAGA]
[-] EMBL OSC29031 [ACCCCGGACAATTCTGTCCTGGTTGTACGCAGGTAGCAGGTGGCTGACCCGCTCCATCTGTGATGGGGAACTTCTCATCGGCAACCAAAATCCTTAAAGAACTTGATGCTGGGGATAGTAGATATGCAGACCAACAAAAGTAACAGGTCAGAATCTGATATGTCGCCCTAAGAAATATAAGAGTCTGAAAAGTGGGTTTATAAATCAAAAACCTTTCAAGGGGATTATCTTTTCCACGGGTCAAATCAATCTTAACATTGCTAACAGCAACATCTTCTTCCTTCAGCAGCACCTTGGAAGATTTCTGTGAACAAACTATGTCTTGTGCGGTTATATTCTTAAAGTGCTCCAGCTTGTCCTTTGGAACAGAATATTCATTGCAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6267#0 TTTTTTTTTTTAACAAACGTTGTTTGCCAATATATATATATATATAATATAATTATATAT 60
consensus_6267#1 ------------------------------------------------------------
consensus_6267#0 CCATTCACTAGCAAAGCAGGAGCAACGCCATCAGTCCCAGACAGCCCAGGCTCAGAGTAA 120
consensus_6267#1 ------------------------------------------------------------
consensus_6267#0 AAAAAAAATCAGAAGATCACGATACTGGCGTATCAGCTACTACTATCTGCTATGGTAGCC 180
consensus_6267#1 ------------------------------------------------------------
consensus_6267#0 AGCCGTCATGTGACACCACCACTGCCCAAGACATTTTCTGTGGCCTATCACCTGTACAAC 240
consensus_6267#1 ------------------------------------------------------------
consensus_6267#0 TAATCTGCGCGTTACTTATGCGTGCAGATTACCAGCAAAAACAAAACCCGTAATTAGTAG 300
consensus_6267#1 ------------------------------------------------------------
consensus_6267#0 TATTGGATGCTCCCGCTCAGTAATAAAAGGTTCCTTCCTTCCTTCCGTATGTCTACCTAT 360
consensus_6267#1 ------------------------------------------------------------
consensus_6267#0 GATCCTTTCTCCTTTGTCGTACTAGTATGCTACGAGCTACTACTAACTAACACTGATGAC 420
consensus_6267#1 ------------------------------------------------------------
consensus_6267#0 AGTACTTGGCAACAAGGAGTTGCTGAAGATTAGTGGAATCTAATGCGCTTCT-TCCTGGG 479
consensus_6267#1 -------------------------------------ACCCCGGACAATTCTGTCCTGGT 23
* * * **** ******
consensus_6267#0 AGTGT-CATG-AACTTGTGTCTTCTCACCATACATCCTCAGTTGTAGG-TTCTCGAAGGC 536
consensus_6267#1 TGTACGCAGGTAGCAGGTGGCTGACC-CGCTCCATCTGTGATGGGGAACTTCTCATCGGC 82
** ** * * * *** ** * * * **** * * ***** ***
consensus_6267#0 TTCTGACACCGCTTCAACCAGCTCGTGCTTCTTGGCGTAGACCCGGACAATTCTGTCCTG 596
consensus_6267#1 AACCAAAATC--CTTAAAGAACT--TGATGCTGGGGATAG---TAGATA------TGCAG 129
* * * * * ** * ** ** * ** ** *** ** * * * *
consensus_6267#0 GTTGTACGCAGGTAGCAGGTGGCTGACCCGCTCATCTGTGATGGGGAACTTCTCATCGCA 656
consensus_6267#1 ACCA-ACAAAAGTAACAGGTCAG-AATCTGATATGTCGCCCTAAGAAATATAAGAGTCTG 187
** * *** ***** * * * * * * * ** * *
consensus_6267#0 ACCAAAATCCTTAAAGAACTTGATGCTTTCAAGGGGATTATCTTTTCCACGGGTCAAATC 716
consensus_6267#1 AAAAGTGGGTTTATAAATCAAAAACCTTTCAAGGGGATTATCTTTTCCACGGGTCAAATC 247
* * *** * * * * ***********************************
consensus_6267#0 AATCTTAACATTGCTAACAGCAACATCTTCTTCCTTCAGCAGCACCTTGGAAGATTTCTG 776
consensus_6267#1 AATCTTAACATTGCTAACAGCAACATCTTCTTCCTTCAGCAGCACCTTGGAAGATTTCTG 307
************************************************************
consensus_6267#0 TGAACAAACTATGTCTTGTGCGGTTATATTCTTAAAGTGCTCCAGCTTGTCCTTTGGAAC 836
consensus_6267#1 TGAACAAACTATGTCTTGTGCGGTTATATTCTTAAAGTGCTCCAGCTTGTCCTTTGGAAC 367
************************************************************
consensus_6267#0 AGAATATTCATTGCAGAACTTATAGAGCTCTCTTCGGCGAATACGTTGAATGATCCCTTT 896
consensus_6267#1 AGAATATTCATTGCAGA------------------------------------------- 384
*****************
consensus_6267#0 TGCTTTGTTCAGTTCATCGTTGGGAGCAGTTTCAATGCTTTTAATGATCGTGTCATCTNA 956
consensus_6267#1 ------------------------------------------------------------
consensus_6267#0 CTTCCAGAAGTCCGCTGGATCTTGTGCATGCAAAGCTATTCCCAAGTATTCGTTAGCCTC 1016
consensus_6267#1 ------------------------------------------------------------
consensus_6267#0 AACAAGTGCATCCACAAGCATCAGTTCAACAGCCTTNACTTTCGCATGTGTATAGACAGT 1076
consensus_6267#1 ------------------------------------------------------------
consensus_6267#0 GCGGTGAAGATCAGCACGTGTCGTAAACAATTTATGGA 1114
consensus_6267#1 --------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||