cluster # 6269

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Oryza sativa
cluster # 6269 cluster # 6269 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6269#0 length = 582 sequences # 2

consensus_6269#1 length = 483 sequences # 1
consensus_6269#2 length = 217 sequences # 1

consensusID : consensus_6269#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 582
fasta sequence

                              [GGCGGAATTGTAGCACCAGCTTTTGGCGACAAGTGGGACGAAGAAGCGTGTGCTGTTCTTCAGAAGGCATTTCCTGATCATGAGGTGGTGATGGTGGAAGGCGCAAGAGAGATCGTGCTGGCAGGGGGAAACATACACTGCATCACGCAGCAGCAGCCTGTACGCCCGTCGTAGATGATACTGCGTATATAGTATTATGAATTTGGACATGGGACTAGTCCAGATTCGTAGTACTATATGTCCAGGGAGTAGATGGCACTATAGCAGCCATGCCCTATCGTGAATTCGTGATAAGCTACATCATTTGCTACCCAAAATGGCGACCCGATCATACACCATTGATTACCCAAAACCAAATGAATGAATTGATAGATTACCCAAAACCAAATGAATGAGTTGATAGAATAAGGCCGCAGACAAACATTGTGATTTGTGAGCTTGTGTGTAGGGGATGTGGTTGCACCAGCGTGATGGATATGGTTGTAAGTTGCAGTAGTGTAAGCACGTTGGAAACTGCCTTATGGCCTTTGCCACGTTGACCAGGCGAATGGAAATGAAAATGGCTTTGAGGCAAAAAAAAAA]

[+] EMBL CF323296             [GGCGGAATTGTAGCACCAGCTTTTGGCGACAAGTGGGACGAAGAAGCGTGTGCTGTTCTTCAGAAGGCATTTCCTGATCATGAGGTGGTGATGGTGGAAGGCGCAAGAGAGATCGTGCTGGCAGGGGGAAACATACACTGCATCACGCAGCAGCAGCCTGTACGCCCGTCGTAGATGATACTGCGTATATAGTATTATGAATTTGGACATGGGACTAGTCCAGATTCGTAGTACTATATGTCCAGGGAGTAGATGGCACTATAGCAGCCATGCCCTATCGTGAATTCGTGATAAGCTACATCATTTGCTACCCAAAATGGCGACCCGATCATACACCATTGATTACCCAAAACCAAATGAATGAATTGATAGATTACCCAAAACCAAATGAATGAGTTGATAGAATAAGGCCGCAGACAAACATTGTGATTTGT                                                                                                                                                    ]
[+] EMBL BI813651             [                                             GCGTGTCCTGTTCTTCAGAAGCCATTTCCTGATCATGA GT GTGATGGTGGAAGGCGCAAGAGAGATCGTGCT GCAGGTGGAAACATACCCTGCATCACGCAGCA CAGCCTGTACGCCCGTCGTAGATGATACTACGTATATAGTATTATGAATTTGGACATGGGACTAGTCCAGATTCGTAGTACTATATGTCCAGGGAGTAGATGGCACTATA CAGCCATGCCCTATCGTGAATTCGTGATAAGCTACATCATTTGCTACCC AAATGGCGACCCGATCGTACACC TTGATTACCC AAACC AATGAATGAATTGATAGATTACCC AAACC ATTGAATGAGTTGATAGAATAAGGCC CAGAC AACATTGTGATTTGTGAGCTTGTGTGTAGGGGATGTGGTTGCACCAGCGTGATGGATATGGTTGTAAGTTGCAGTAGTGTAAGCACGTTGGAAACTGCCTTATGGCCTTTGCCACGTTGACCAGGCGAATGGAAATGAAAATGGCTTTGAGGCAAAAAAAAAA]




>consensus_6269#0
GGCGGAATTGTAGCACCAGCTTTTGGCGACAAGTGGGACGAAGAAGCGTGTGCTGTTCTT
CAGAAGGCATTTCCTGATCATGAGGTGGTGATGGTGGAAGGCGCAAGAGAGATCGTGCTG
GCAGGGGGAAACATACACTGCATCACGCAGCAGCAGCCTGTACGCCCGTCGTAGATGATA
CTGCGTATATAGTATTATGAATTTGGACATGGGACTAGTCCAGATTCGTAGTACTATATG
TCCAGGGAGTAGATGGCACTATAGCAGCCATGCCCTATCGTGAATTCGTGATAAGCTACA
TCATTTGCTACCCAAAATGGCGACCCGATCATACACCATTGATTACCCAAAACCAAATGA
ATGAATTGATAGATTACCCAAAACCAAATGAATGAGTTGATAGAATAAGGCCGCAGACAA
ACATTGTGATTTGTGAGCTTGTGTGTAGGGGATGTGGTTGCACCAGCGTGATGGATATGG
TTGTAAGTTGCAGTAGTGTAAGCACGTTGGAAACTGCCTTATGGCCTTTGCCACGTTGAC
CAGGCGAATGGAAATGAAAATGGCTTTGAGGCAAAAAAAAAA

consensusID : consensus_6269#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 483
fasta sequence

                              [ATCGTGCTGCAGGGGGAAACATACACTGCATCACCAGCACAGCCTGTACGCCCGTCGTAGATGATACTGCGTATATAGTATTATGAATTTGGACCTGGGACTAGTCCAGATTCGTAGTACTATATGTCCAGGGAGTAGATGGCACTATAGCAGCCATGCCCTATCGTGAATTCGTGATAAGCTACATCATTTGCTACCCCAAATGGCGACCCGATCATACACCCTTGATTACCCCAAACCCAATGAATGAATTGATAGATTACCCCAAACCCAATGAATGAGTTGATAGAATAAGGCCGCAGACCAACACTTGTGATTTGTGAGCTTGTGTGTAGGGGATGTGGTTGCACCACGCGTGATGGATATGGTTGTAAGTTGCACGTAGTGTAAGCACGTTGGAAACTGCCTTATGGCCTTTGCCACGTTGACCACGGCGAATGGAAATGAAAATGGCTTTGAGGCTGTTCTCGGTGAAAAAAAAAA]

[+] EMBL BI805246             [ATCGTGCTGCAGGGGGAAACATACACTGCATCACCAGCACAGCCTGTACGCCCGTCGTAGATGATACTGCGTATATAGTATTATGAATTTGGACCTGGGACTAGTCCAGATTCGTAGTACTATATGTCCAGGGAGTAGATGGCACTATAGCAGCCATGCCCTATCGTGAATTCGTGATAAGCTACATCATTTGCTACCCCAAATGGCGACCCGATCATACACCCTTGATTACCCCAAACCCAATGAATGAATTGATAGATTACCCCAAACCCAATGAATGAGTTGATAGAATAAGGCCGCAGACCAACACTTGTGATTTGTGAGCTTGTGTGTAGGGGATGTGGTTGCACCACGCGTGATGGATATGGTTGTAAGTTGCACGTAGTGTAAGCACGTTGGAAACTGCCTTATGGCCTTTGCCACGTTGACCACGGCGAATGGAAATGAAAATGGCTTTGAGGCTGTTCTCGGTGAAAAAAAAAA]




>consensus_6269#1
ATCGTGCTGCAGGGGGAAACATACACTGCATCACCAGCACAGCCTGTACGCCCGTCGTAG
ATGATACTGCGTATATAGTATTATGAATTTGGACCTGGGACTAGTCCAGATTCGTAGTAC
TATATGTCCAGGGAGTAGATGGCACTATAGCAGCCATGCCCTATCGTGAATTCGTGATAA
GCTACATCATTTGCTACCCCAAATGGCGACCCGATCATACACCCTTGATTACCCCAAACC
CAATGAATGAATTGATAGATTACCCCAAACCCAATGAATGAGTTGATAGAATAAGGCCGC
AGACCAACACTTGTGATTTGTGAGCTTGTGTGTAGGGGATGTGGTTGCACCACGCGTGAT
GGATATGGTTGTAAGTTGCACGTAGTGTAAGCACGTTGGAAACTGCCTTATGGCCTTTGC
CACGTTGACCACGGCGAATGGAAATGAAAATGGCTTTGAGGCTGTTCTCGGTGAAAAAAA
AAA

consensusID : consensus_6269#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 217
fasta sequence

                              [AGCAGCCATGCCCTATCGTGAATTCGTGATAAGCTACATCATTTGCTACCCAAAATGGCGACCCGATCATACACCATTGATTACCCAAAACCAAATGAATGAATTGATAGATTACCCAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF315868             [AGCAGCCATGCCCTATCGTGAATTCGTGATAAGCTACATCATTTGCTACCCAAAATGGCGACCCGATCATACACCATTGATTACCCAAAACCAAATGAATGAATTGATAGATTACCCAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_6269#2
AGCAGCCATGCCCTATCGTGAATTCGTGATAAGCTACATCATTTGCTACCCAAAATGGCG
ACCCGATCATACACCATTGATTACCCAAAACCAAATGAATGAATTGATAGATTACCCAAA
ACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6269#0      GGCGGAATTGTAGCACCAGCTTTTGGCGACAAGTGGGACGAAGAAGCGTGTGCTGTTCTT 60
consensus_6269#1      ------------------------------------------------------------
consensus_6269#2      ------------------------------------------------------------
                                                                                  

consensus_6269#0      CAGAAGGCATTTCCTGATCATGAGGTGGTGATGGTGGAAGGCGCAAGAGAGATCGTGCTG 120
consensus_6269#1      ---------------------------------------------------ATCGTGCTG 9
consensus_6269#2      ------------------------------------------------------------
                                                                                  

consensus_6269#0      GCAGGGGGAAACATACACTGCATCACGCAGCAGCAGCCTGTACGCCCGTCGTAGATGATA 180
consensus_6269#1      -CAGGGGGAAACATACACTGCATCAC-CAGCA-CAGCCTGTACGCCCGTCGTAGATGATA 66
consensus_6269#2      ------------------------------------------------------------
                                                                                  

consensus_6269#0      CTGCGTATATAGTATTATGAATTTGGACATGGGACTAGTCCAGATTCGTAGTACTATATG 240
consensus_6269#1      CTGCGTATATAGTATTATGAATTTGGACCTGGGACTAGTCCAGATTCGTAGTACTATATG 126
consensus_6269#2      ------------------------------------------------------------
                                                                                  

consensus_6269#0      TCCAGGGAGTAGATGGCACTATAGCAGCCATGCCCTATCGTGAATTCGTGATAAGCTACA 300
consensus_6269#1      TCCAGGGAGTAGATGGCACTATAGCAGCCATGCCCTATCGTGAATTCGTGATAAGCTACA 186
consensus_6269#2      ----------------------AGCAGCCATGCCCTATCGTGAATTCGTGATAAGCTACA 38
                                            **************************************

consensus_6269#0      TCATTTGCTACCCAAAATGGCGACCCGATCATACACCATTGATTACCCAAAACCAAATGA 360
consensus_6269#1      TCATTTGCTACCCCAAATGGCGACCCGATCATACACCCTTGATTACCCCAAACCCAATGA 246
consensus_6269#2      TCATTTGCTACCCAAAATGGCGACCCGATCATACACCATTGATTACCCAAAACCAAATGA 98
                      ************* *********************** ********** ***** *****

consensus_6269#0      ATGAATTGATAGATTACCCAAAACCAAATGAATGAGTTGATAGAATAAGGCCGCAGACAA 420
consensus_6269#1      ATGAATTGATAGATTACCCCAAACCCAATGAATGAGTTGATAGAATAAGGCCGCAGACCA 306
consensus_6269#2      ATGAATTGATAGATTACCCAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 158
                      ******************* ***** **  **  *    * * ** **      * *  *

consensus_6269#0      ACA-TTGTGATTTGTGAGCTTGTGTGTAGGGGATGTGGTTGCACCA-GCGTGATGGATAT 478
consensus_6269#1      ACACTTGTGATTTGTGAGCTTGTGTGTAGGGGATGTGGTTGCACCACGCGTGATGGATAT 366
consensus_6269#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA- 217
                      * *      *      *          *    *         *  *      *   * * 

consensus_6269#0      GGTTGTAAGTTGCA-GTAGTGTAAGCACGTTGGAAACTGCCTTATGGCCTTTGCCACGTT 537
consensus_6269#1      GGTTGTAAGTTGCACGTAGTGTAAGCACGTTGGAAACTGCCTTATGGCCTTTGCCACGTT 426
consensus_6269#2      ------------------------------------------------------------
                                                                                  

consensus_6269#0      GACCA-GGCGAATGGAAATGAAAATGGCTTTGAGGC-----------AAAAAAAAAA 582
consensus_6269#1      GACCACGGCGAATGGAAATGAAAATGGCTTTGAGGCTGTTCTCGGTGAAAAAAAAAA 483
consensus_6269#2      ---------------------------------------------------------