cluster # 6270

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Oryza sativa
cluster # 6270 cluster # 6270 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6270#0 length = 683 sequences # 3

consensus_6270#1 length = 529 sequences # 1

consensusID : consensus_6270#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 683
fasta sequence

                              [ACAAACAAGCAGTTCTCTGTTTGCAAATTCTACTCCTGGTTTTGCTTCTTCTTCTCCGTTTGGCGCATCATTATCAAACCCCAGTTCATTCAGTACTGGCTTGTCCTTGGTTAACACTCAATCAGCTGGGCTATTTAGTTCTTCCCCGGCGTTTGCGCAACAGCCATTTACCCAGGCATCATCAGGGTTCGGATTGAGCACTCCAGCTTTCTCTACTGGAAGCCTATTCAGCACACCTACCCCTGGAATGACTGGTGGACTGTTTGGCAGCATGTCTTCACCCTTTTCATCAACGGCGTTTCAACAATCTGCCCCTACTCCAAGCATGTTCTCCTTCCAACCTCAAACTCAAACAGCTCCTACTGGT-GGATTTCCTGGCATTTCCAACACTATGAATCAGGCACCTTTTGGACAGCCAACTCCTAGCCAGTCCAATATGGTCATGCAACCAGCTCTTGTTACAAATCCCTTCGGTACTCTGCCAGCAATGCCTCAGATGTCCATTGGGAATGGTGGATCAGCCCCTTCTGTTCAATATGGAATCTCAAGTTTGCCAGTTGCTGATAAGCCTCTTACGAACAGGACATCATTATCCAT-GGTGGTTCCTAGGCATTTGTCGCAGAGAAGGATAAAAGTGCTGCCCAGAAAATATAATCCGATATCTGATGGCAAGGTCCCATTCT]

[+] EMBL C26678               [ACAAACAAGCAGTTCTCTGTTTGCAAATTCTACTCCTGGTTTTGCTTCTTCTTCTCCGTTTGGCGCATCATTATCAAACCCCAGTTCATTCAGTACTGGCTTGTCCTTGGTTAACACTCAATCAGCTGGGCTATTTAGTTCTTCCCCGGCGTTTGCGCAACAGCCATTTACCCAGGCATCATCAGGGTTCGGATTGAGCACTCCAGCTTTCTCTACTGGAAGCCTATTCAGCACACCTACCCCTGGAATGACTGGTGGACTGTTTGGCAGCATGTCTTCACCCTTTTCATCAACGGCGTTTCAACAATCTGCCCCTACTCCAAGCATGTTCTCCTTCCAACCTCAAACTCAAACAGCTCCTACTGGTGGGATTTCTGGGCATTTCCAA                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CF306703             [                                                                                                    TTGTCCTTGGTTAACACTCAATCAGCTGGGCTATTTAGTTCTTCCCCGGCGTTTGCGCAACAGCCATTTACCCAGGCATCATCAGGGTTCGGATTGAGCACTCCAGCTTTCTCTACTGGAAGCCTATTCAGCACACCTACCCCTGGAATGACTGGTGGACTGTTTGGCAGCATGTCTTCACCCTTTTCATCAACGGCGTTTCAACAATCTGCCCCTACTCCAAGCATGTTCTCCTTCCAACCTCAAACTCAAACAGCTCCTACTGGT GGATTTCCTGGCATTTCCAACACTATGAATCAGGCACCTTTTGGACAGCCAACTCCTAGCCAGTCCAATATGGTCATGCAACCAGCTCTTGTTACAAATCCCTTCGGTACTCTGCCAGCAATGCCTCAGATGTCCATTGGGAATGGTGGATCAGCCCCTTCTGTTCAATATGGAATCTCAAGTTTGCCAGTTGCTGATAAGCCTCTTACGAACAGGACATCATTATCCAT GGTGGTTCCTAGGCATTTGTCGCAGAGAAGGATAAAAGTGCTGCCCAGAAAATATAATCCGATATCTGATGGCAAGGTCCCATTCT]
[+] EMBL CF323302             [                                                                                                                                                                   CCATTTACCCAGGCATCATCAGGGTTCGGATTGAGCACTCCAGCTTTCTCTACTGGAAGCCTATTCAGCACACCTACCCCTGGAATGACTGGTGGACTGTTTGGCAGCATGTCTTCACCCTTTTCATCAACGGCGTTTCAACAATCTGCCCCTACTCCAAGCATGTTCTCCTTCCAACCTCAAACTCAAACAGCTCCTACTGGT GGATTTCCTGGCATTTCCAACACTATGAATCAGGCACCTTTTGGACAGCCAACTCCTAGCCAGTCCAATATGGTCATGCAACCAGCTCTTGTTACAAATCCCTTCGGTACTCTGCCAGCAATGCCTCAGATGTCCATTGGGAATGGTGGATCAGCCCCTTCTGTTCAATATGGAATCTCAAGTTTGCCAGTTGCTGATAAGCCTCTTACGAACAGGACATCATTATCCATGGGTGGTTCCTAGGCATTTGTCGCAGAGAAGGATAAAAGTGCTGCCCAGAAAATATAATCCGATATCTGATGGCAAGGTCCCATTCT]




>consensus_6270#0
ACAAACAAGCAGTTCTCTGTTTGCAAATTCTACTCCTGGTTTTGCTTCTTCTTCTCCGTT
TGGCGCATCATTATCAAACCCCAGTTCATTCAGTACTGGCTTGTCCTTGGTTAACACTCA
ATCAGCTGGGCTATTTAGTTCTTCCCCGGCGTTTGCGCAACAGCCATTTACCCAGGCATC
ATCAGGGTTCGGATTGAGCACTCCAGCTTTCTCTACTGGAAGCCTATTCAGCACACCTAC
CCCTGGAATGACTGGTGGACTGTTTGGCAGCATGTCTTCACCCTTTTCATCAACGGCGTT
TCAACAATCTGCCCCTACTCCAAGCATGTTCTCCTTCCAACCTCAAACTCAAACAGCTCC
TACTGGTGGATTTCCTGGCATTTCCAACACTATGAATCAGGCACCTTTTGGACAGCCAAC
TCCTAGCCAGTCCAATATGGTCATGCAACCAGCTCTTGTTACAAATCCCTTCGGTACTCT
GCCAGCAATGCCTCAGATGTCCATTGGGAATGGTGGATCAGCCCCTTCTGTTCAATATGG
AATCTCAAGTTTGCCAGTTGCTGATAAGCCTCTTACGAACAGGACATCATTATCCATGGT
GGTTCCTAGGCATTTGTCGCAGAGAAGGATAAAAGTGCTGCCCAGAAAATATAATCCGAT
ATCTGATGGCAAGGTCCCATTCT

consensusID : consensus_6270#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 529
fasta sequence

                              [ACAATTTAGTTGCCTTTACAAATGAGTTCTGGGCAAGCCTATTATGTGGGACCCATTCTTATGACAGGCTAACATCCTCTAATTTGTAACTTCCTATTTCATATTGAATGCAGAACTCCTAGCCAGTCCAATATGGTCATGCAACCAGCTCTTGTTACAAATCCCTTCGGTACTCTGCCAGCAATGCCTCAGATGTCCATTGGGAATGGTGGATCAGCCCCTTCTGTTCAATATGGAATCTCAAGTTTGCCAGTTAGTATTATTACTGTCTTAACTATTTTGATTGTTAAAGTAGAGTGCATGAGCACCTGAGCTTACTATAGAAGGATTGTTAGCAAGTTTGTCTGCTGATTGAGATACAAGAAAAGTGCATAGCAGATTGAGACATTCTACTCTTTTGCAGGTTGCTGATAAGCCTCTTACGAACAGGACATCATTATCCATGGTGGTTCCTAGGCATTTGTCGCAAAGAAGGATAAAAGTGCTGCCCACAAAATATAATGCGATATCTGATGGCAAGGTCCCATTC]

[+] EMBL CF304566             [ACAATTTAGTTGCCTTTACAAATGAGTTCTGGGCAAGCCTATTATGTGGGACCCATTCTTATGACAGGCTAACATCCTCTAATTTGTAACTTCCTATTTCATATTGAATGCAGAACTCCTAGCCAGTCCAATATGGTCATGCAACCAGCTCTTGTTACAAATCCCTTCGGTACTCTGCCAGCAATGCCTCAGATGTCCATTGGGAATGGTGGATCAGCCCCTTCTGTTCAATATGGAATCTCAAGTTTGCCAGTTAGTATTATTACTGTCTTAACTATTTTGATTGTTAAAGTAGAGTGCATGAGCACCTGAGCTTACTATAGAAGGATTGTTAGCAAGTTTGTCTGCTGATTGAGATACAAGAAAAGTGCATAGCAGATTGAGACATTCTACTCTTTTGCAGGTTGCTGATAAGCCTCTTACGAACAGGACATCATTATCCATGGTGGTTCCTAGGCATTTGTCGCAAAGAAGGATAAAAGTGCTGCCCACAAAATATAATGCGATATCTGATGGCAAGGTCCCATTC]




>consensus_6270#1
ACAATTTAGTTGCCTTTACAAATGAGTTCTGGGCAAGCCTATTATGTGGGACCCATTCTT
ATGACAGGCTAACATCCTCTAATTTGTAACTTCCTATTTCATATTGAATGCAGAACTCCT
AGCCAGTCCAATATGGTCATGCAACCAGCTCTTGTTACAAATCCCTTCGGTACTCTGCCA
GCAATGCCTCAGATGTCCATTGGGAATGGTGGATCAGCCCCTTCTGTTCAATATGGAATC
TCAAGTTTGCCAGTTAGTATTATTACTGTCTTAACTATTTTGATTGTTAAAGTAGAGTGC
ATGAGCACCTGAGCTTACTATAGAAGGATTGTTAGCAAGTTTGTCTGCTGATTGAGATAC
AAGAAAAGTGCATAGCAGATTGAGACATTCTACTCTTTTGCAGGTTGCTGATAAGCCTCT
TACGAACAGGACATCATTATCCATGGTGGTTCCTAGGCATTTGTCGCAAAGAAGGATAAA
AGTGCTGCCCACAAAATATAATGCGATATCTGATGGCAAGGTCCCATTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6270#0      ACAAACAAGCAGTTCTCTGTTTGCAAATTCTACTCCTGGTTTTGCTTCTTCTTCTCCGTT 60
consensus_6270#1      ------------------------------------------------------------
                                                                                  

consensus_6270#0      TGGCGCATCATTATCAAACCCCAGTTCATTCAGTACTGGCTTGTCCTTGGTTAACACTCA 120
consensus_6270#1      ------------------------------------------------------------
                                                                                  

consensus_6270#0      ATCAGCTGGGCTATTTAGTT--CTTCCCCGGCGTTTGCGCAACA-GCCATTTACCCAGGC 177
consensus_6270#1      ---------ACAATTTAGTTGCCTTTACAAATGAGTTCTGGGCAAGCCTATTATGTGGGA 51
                                * ********  ***  *    *  * *    ** ***  ***    ** 

consensus_6270#0      ATCATCAGGGTTCGGATTGAGCACTCCAGCTTTCTCTACTGGAAGCCTATTCAGCACAC- 236
consensus_6270#1      CCCAT------TCTTAT--GACAGGCTAACATCCTCTAATTTGTAACTTCCTATTTCATA 103
                        ***      **  **    **  * * * * ***** *      **    *   **  

consensus_6270#0      CTACCCCTGGAATGACTGGTGGACTGTTTGGCAGCATGTCTTCACCCTTTTCATCAACGG 296
consensus_6270#1      TTGAATGCAGAACTCCTAGCCAGTCCAATATGGTCATGCAACCAGCTCTTGTTACAA-AT 162
                       *       ***   ** *         *     ****    ** *  **    ***   

consensus_6270#0      CGTTTCAACAATCTGCCCCTACTCCAAGCATGTTCTCCTTCCAACCTCAAACTCAAACAG 356
consensus_6270#1      CCCTTCGGTACTCTGCCAGCAATGCCT-CAGATGTCCATTGGGA----ATGGTGGATCAG 217
                      *  ***   * ******   * * *   **  *   * **   *    *   *  * ***

consensus_6270#0      CTCCTACTGGTGGATTTCCTGGCATTTCCAACACTATGAATCAGGCACCTTTTGGACAGC 416
consensus_6270#1      CCCCTTCTGTTCAATAT----GGAATCTCAAGTTTGCCAGTTAGTATTATTACTGTC--T 271
                      * *** *** *  ** *    * * *  ***   *   * * **     **   * *   

consensus_6270#0      CAACT-CCTAGCCAGTCCAATATGGTCATGCAACCAGCTCTTGTTACAAATCCCTTCGGT 475
consensus_6270#1      TAACTATTTTGATTGTTAAAGTAGAGTGCATGAGCACCTGAGCTTACTA------TAGAA 325
                       ****   * *   **  **   *        * ** **    **** *      * *  

consensus_6270#0      ACTCTGCCAGCAATGCCTCAGATGTCCATTGGGAATGGTGGATCAGCCCCTTCTGTTCAA 535
consensus_6270#1      GGATTGTTAGCAAG--TTTGTCTGCTGATTGAGATACAAGAAAAGTGCATAGCAGATTGA 383
                          **  *****    *    **   **** **     * *     *    * * *  *

consensus_6270#0      TATGGAATCT-CAAGTTTGCCAGTTGCTGATAAGCCTCTTACGAACAGGACATCATTATC 594
consensus_6270#1      GAC--ATTCTACTCTTTTGCAGGTTGCTGATAAGCCTCTTACGAACAGGACATCATTATC 441
                       *   * *** *   *****  **************************************

consensus_6270#0      CATGGTGGTTCCTAGGCATTTGTCGCAGAGAAGGATAAAAGTGCTGCCCAGAAAATATAA 654
consensus_6270#1      CATGGTGGTTCCTAGGCATTTGTCGCAAAGAAGGATAAAAGTGCTGCCCACAAAATATAA 501
                      *************************** ********************** *********

consensus_6270#0      TCCGATATCTGATGGCAAGGTCCCATTCT 683
consensus_6270#1      TGCGATATCTGATGGCAAGGTCCCATTC- 529
                      * **************************