cluster # 628

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Oryza sativa
cluster # 628 cluster # 628 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_628#0 length = 569 sequences # 1

consensus_628#1 length = 349 sequences # 1

consensusID : consensus_628#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 569
fasta sequence

                              [TACCCCAGTCATGAATCACTCCGTGGTAACCGTCCTCCCGAGGGTTAGACTAGCTACTTCTGGAGCAACCCACTCCCATGGTGTGACGGGCGGTGTGTACAAGGCCCGGGAACGTATTCACCGTGACGTTCTGATTCACGATTACTAGCGATTCCGACTTCACGCAGTCGAGTTGCAGACTGCGATCCGGACTACGATCGGTTTTATGGGATTAGCTCCACCTCGCGGCTTGGCAACCCTTTGTACCGACCATTGTAGCACGTGTGTAGCCCTGGCCGTAAGGGCCATGATGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCACCGGCAGTCTCCTTAGAGTGCCCACCATTACGTGCTGGTAACTAAGGACAAGGGTTGCGCTCGTTACGGGACTTAACCCAACATCTCACGACACGAGCTGACGACAGCATGCAGCACCTGTGTCTGAGTTCCCGAAGGCACCAATCCATCTCTGGAAAGTTCTCAGCATGTCAAGGCCAGGTAAGGTTCTTCGCGTCGCTTCGAATTAAAACCACATGCTCCACCGCTTTGATGCGGGCCCG]

[+] EMBL OSA420713            [TACCCCAGTCATGAATCACTCCGTGGTAACCGTCCTCCCGAGGGTTAGACTAGCTACTTCTGGAGCAACCCACTCCCATGGTGTGACGGGCGGTGTGTACAAGGCCCGGGAACGTATTCACCGTGACGTTCTGATTCACGATTACTAGCGATTCCGACTTCACGCAGTCGAGTTGCAGACTGCGATCCGGACTACGATCGGTTTTATGGGATTAGCTCCACCTCGCGGCTTGGCAACCCTTTGTACCGACCATTGTAGCACGTGTGTAGCCCTGGCCGTAAGGGCCATGATGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCACCGGCAGTCTCCTTAGAGTGCCCACCATTACGTGCTGGTAACTAAGGACAAGGGTTGCGCTCGTTACGGGACTTAACCCAACATCTCACGACACGAGCTGACGACAGCATGCAGCACCTGTGTCTGAGTTCCCGAAGGCACCAATCCATCTCTGGAAAGTTCTCAGCATGTCAAGGCCAGGTAAGGTTCTTCGCGTCGCTTCGAATTAAAACCACATGCTCCACCGCTTTGATGCGGGCCCG]




>consensus_628#0
TACCCCAGTCATGAATCACTCCGTGGTAACCGTCCTCCCGAGGGTTAGACTAGCTACTTC
TGGAGCAACCCACTCCCATGGTGTGACGGGCGGTGTGTACAAGGCCCGGGAACGTATTCA
CCGTGACGTTCTGATTCACGATTACTAGCGATTCCGACTTCACGCAGTCGAGTTGCAGAC
TGCGATCCGGACTACGATCGGTTTTATGGGATTAGCTCCACCTCGCGGCTTGGCAACCCT
TTGTACCGACCATTGTAGCACGTGTGTAGCCCTGGCCGTAAGGGCCATGATGACTTGACG
TCATCCCCACCTTCCTCCGGTTTGTCACCGGCAGTCTCCTTAGAGTGCCCACCATTACGT
GCTGGTAACTAAGGACAAGGGTTGCGCTCGTTACGGGACTTAACCCAACATCTCACGACA
CGAGCTGACGACAGCATGCAGCACCTGTGTCTGAGTTCCCGAAGGCACCAATCCATCTCT
GGAAAGTTCTCAGCATGTCAAGGCCAGGTAAGGTTCTTCGCGTCGCTTCGAATTAAAACC
ACATGCTCCACCGCTTTGATGCGGGCCCG

consensusID : consensus_628#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 349
fasta sequence

                              [TTTTTTTTTTTATATGNACAAGGCCCGGGAACGTATTCACCGCANCAATGCTGATCTGCGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTGAGATAGGGTTTCTGGGATTGGCTTACCGTCGCCGGCTTGCAGCCCTCTGTCCCTACCATTGTAGTACGTGTGTAGCCCTGGTCGTAAGGGCCATGATGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCACCGGCGGTCTCCTTAGAGTTCCCACCATTACGTGCTGGCAACTAAGGACAAGGGTTGCGCTCGTTGCGGGACTTAACCCAACATCCCCTTGTCTCGTCCTCT]

[+] EMBL CA762719             [TTTTTTTTTTTATATGNACAAGGCCCGGGAACGTATTCACCGCANCAATGCTGATCTGCGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTGAGATAGGGTTTCTGGGATTGGCTTACCGTCGCCGGCTTGCAGCCCTCTGTCCCTACCATTGTAGTACGTGTGTAGCCCTGGTCGTAAGGGCCATGATGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCACCGGCGGTCTCCTTAGAGTTCCCACCATTACGTGCTGGCAACTAAGGACAAGGGTTGCGCTCGTTGCGGGACTTAACCCAACATCCCCTTGTCTCGTCCTCT]




>consensus_628#1
TTTTTTTTTTTATATGNACAAGGCCCGGGAACGTATTCACCGCANCAATGCTGATCTGCG
ATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCAATCCGGACTGAGATAG
GGTTTCTGGGATTGGCTTACCGTCGCCGGCTTGCAGCCCTCTGTCCCTACCATTGTAGTA
CGTGTGTAGCCCTGGTCGTAAGGGCCATGATGACTTGACGTCATCCCCACCTTCCTCCGG
TTTGTCACCGGCGGTCTCCTTAGAGTTCCCACCATTACGTGCTGGCAACTAAGGACAAGG
GTTGCGCTCGTTGCGGGACTTAACCCAACATCCCCTTGTCTCGTCCTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_628#0      TACCCCAGTCATGAATCACTCCGTGGTAACCGTCCTCCCGAGGGTTAGACTAGCTACTTC 60
consensus_628#1      ------------------------------------------------------------
                                                                                 

consensus_628#0      TGGAGCAACCCACTCCCATGGTGTGACGGGCGGTGTGTACAAGGCCCGGGAACGTATTCA 120
consensus_628#1      ---------------------TTTTTTTTTTTATATGNACAAGGCCCGGGAACGTATTCA 39
                                          * *         * ** **********************

consensus_628#0      CCGTGACGTT-CTGATTCACGATTACTAGCGATTCCGACTTCACGCAGTCGAGTTGCAGA 179
consensus_628#1      CCGCANCAATGCTGATCTGCGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGA 99
                     ***   *  * *****   ************************ * **************

consensus_628#0      CTGCGATCCGGACTACGATCGGTTTTATGGGATTAGCTCCACCTCGCGGCTTGGCAACCC 239
consensus_628#1      CTCCAATCCGGACTGAGATAGGGTTTCTGGGATTGGCTTACCGTCGCCGGCTTGCAGCCC 159
                     ** * *********  *** ** *** ******* ***   * **** *  * *** ***

consensus_628#0      TTTGTACCGACCATTGTAGCACGTGTGTAGCCCTGGCCGTAAGGGCCATGATGACTTGAC 299
consensus_628#1      TCTGTCCCTACCATTGTAGTACGTGTGTAGCCCTGGTCGTAAGGGCCATGATGACTTGAC 219
                     * *** ** ********** **************** ***********************

consensus_628#0      GTCATCCCCACCTTCCTCCGGTTTGTCACCGGCAGTCTCCTTAGAGTGCCCACCATTACG 359
consensus_628#1      GTCATCCCCACCTTCCTCCGGTTTGTCACCGGCGGTCTCCTTAGAGTTCCCACCATTACG 279
                     ********************************* ************* ************

consensus_628#0      TGCTGGTAACTAAGGACAAGGGTTGCGCTCGTTACGGGACTTAACCCAACATCTCAC-GA 418
consensus_628#1      TGCTGGCAACTAAGGACAAGGGTTGCGCTCGTTGCGGGACTTAACCCAACATCCCCTTGT 339
                     ****** ************************** ******************* *   * 

consensus_628#0      CACGAGCTGACGACAGCATGCAGCACCTGTGTCTGAGTTCCCGAAGGCACCAATCCATCT 478
consensus_628#1      CTCGTCCTCT-------------------------------------------------- 349
                     * **  **                                                    

consensus_628#0      CTGGAAAGTTCTCAGCATGTCAAGGCCAGGTAAGGTTCTTCGCGTCGCTTCGAATTAAAA 538
consensus_628#1      ------------------------------------------------------------
                                                                                 

consensus_628#0      CCACATGCTCCACCGCTTTGATGCGGGCCCG 569
consensus_628#1      -------------------------------