cluster # 6281

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Oryza sativa
cluster # 6281 cluster # 6281 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6281#0 length = 436 sequences # 3

consensus_6281#1 length = 288 sequences # 1

consensusID : consensus_6281#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 436
fasta sequence

                              [TCAGGAGGAAAAGGGCACTTTACAGACTCAGTTTGCAGATATAGAGAAGAGCAACGAAGACACAAACCAAGCCCCGCAGCCTCGAGAACCAGCACAGGAGTTTGATACCGATGCTCATATGGAAAAACAAACTGCAATGGAAGCATGAATTGGTGCTCCATACAGACGGTTGGTTCCATTCAATGTATTGCACGAAAATGCTCCGTAACTATATGAAGTTGAGTTTTGGAAAATACATGTGCCAAACTCGAATGCATACTTGCAAGTTTCCTACTGCATGTTTGTATATCAGTACCAGCAAACTGAAGTACTGTTGTACAAACAAAAACATATATTTGCCGTAGTGAGAATTGCTTGAGTTGTAACAATTCCATGTACTCTCTATTATTAAAAGAGCTCTGCATAGCCAAGTTGTACACACGCAAAAAAAAAAAAA]

[+] EMBL AU223140             [TCAGGAGGAAAAGGGCACTTTACAGACTCAGTTTGCAGATATAGAGAAGAGCAACGAAGACACAAACCAAGCCCCGCAGCCTCGAGAACCAGCACAGGAGTTTGATACCGATGCTCATATGGAAAAACAAACTGCAATGGAAGCATGAATTGGTGCTCCATACAGACGGTTGGTTCCATTCAATGTATTGCACGAAAATGCTCCGTAACTATATGAAGTTGAGTTTTGGAAAATACATGTGCCAAACTCGAATGCATACTTGCAAGTTTCCTACTGCATGTTTGTATATCAGTACCAGCAAACTGAAGTACTGTTGTACAAACAAAAACATATATTTGCCGTAGTGAGAATTGCTTGAGTTGTAACAATTCCATGTACTCTCTATTATTAAAAGAGCTCTGCATAGCCAAGTTGTACACACGCAAAAAAAAAAAAA]
[+] EMBL AU174284             [  AGGAGGAAAAGGGCCCTTTNCAGACTCAGTTTGCAGATATAGAGAAGAGCAACGAAGACCCAAACCAAGCCCCGCAGCCTCGAGAACCAGCNCAGGAGTTTGATACCGATGCTCATATGGAAAAACNAACTGCAATGGAAGCATGAATTGGTGCTCCATACAGACGGTTGGTTCCATTCAATGTATTGCACGAAAATGCTCCGTAACTATATGAAGTTGAGTTTTGGAAAATACATGTGCCAAACTCGAATGCATACTTGCAAGTTTCCTACTGCATGTTTGTATATCAGTACCAGCAAACTGAAGTACTGTTGTACAAACAAAAACATATATTTGCCGTAGTGAGAATTGCTTGAGTTGTAACAATTCCATGTACTCTCTATTATTAAAAGAGCTCTGCATAGCCAAGTTGTACACACGCAAAAAAAAAAAAA]
[+] EMBL AU086044             [                                                                                                                    ATATGGAAAAACAAACTGCAATGGAAGCATGAATTGGTGCTCCATACAGACGGTTGGTTCCATTCAATGTATTGCNCGAAANTGCTCCGTAACTATATGAAGTTGAGTTTTGGAAAATACATGTGCCAAACTCGAATGCATACTTGCAAGTTTCCTACTGCATGTTTGTATATCAGTACCAGCAAACTGAAGTACTGTTGTACAAACNAAAACATATATTTGCCGTAGTGAGAATTGCTTGAGTTGTAACAATTCCATGTACTCTCTATTATTAAAAGAGCTCTGCATAGCCAAGTTGTACACACGCAAAAAAAAAAAAA]




>consensus_6281#0
TCAGGAGGAAAAGGGCACTTTACAGACTCAGTTTGCAGATATAGAGAAGAGCAACGAAGA
CACAAACCAAGCCCCGCAGCCTCGAGAACCAGCACAGGAGTTTGATACCGATGCTCATAT
GGAAAAACAAACTGCAATGGAAGCATGAATTGGTGCTCCATACAGACGGTTGGTTCCATT
CAATGTATTGCACGAAAATGCTCCGTAACTATATGAAGTTGAGTTTTGGAAAATACATGT
GCCAAACTCGAATGCATACTTGCAAGTTTCCTACTGCATGTTTGTATATCAGTACCAGCA
AACTGAAGTACTGTTGTACAAACAAAAACATATATTTGCCGTAGTGAGAATTGCTTGAGT
TGTAACAATTCCATGTACTCTCTATTATTAAAAGAGCTCTGCATAGCCAAGTTGTACACA
CGCAAAAAAAAAAAAA

consensusID : consensus_6281#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 288
fasta sequence

                              [AACTGCAANGGGAGCCNGGATTGGTGNTNCAAACAGGNGGTTGGTTCCATTTCAATGTATTGCNCGNNAANGNTCCGTAANTATATGNAGTTGNGTTTTGGAAAANANATGNGCCAAACTTGAATGCANACTTGCAATTTCCTACNGGCATGTTTGTATATCAGTACCAGCAAAANTGAAGTANTGTTGTACAAACGAAAACATATATTNCCCCGTANCNAGAATTGCTTGAGTTGTAACAATTCCANGNACTCTCTATTATTAAAAGAGTTNTGCATAGCCAAGTTG]

[-] EMBL BE228406             [AACTGCAANGGGAGCCNGGATTGGTGNTNCAAACAGGNGGTTGGTTCCATTTCAATGTATTGCNCGNNAANGNTCCGTAANTATATGNAGTTGNGTTTTGGAAAANANATGNGCCAAACTTGAATGCANACTTGCAATTTCCTACNGGCATGTTTGTATATCAGTACCAGCAAAANTGAAGTANTGTTGTACAAACGAAAACATATATTNCCCCGTANCNAGAATTGCTTGAGTTGTAACAATTCCANGNACTCTCTATTATTAAAAGAGTTNTGCATAGCCAAGTTG]




>consensus_6281#1
AACTGCAANGGGAGCCNGGATTGGTGNTNCAAACAGGNGGTTGGTTCCATTTCAATGTAT
TGCNCGNNAANGNTCCGTAANTATATGNAGTTGNGTTTTGGAAAANANATGNGCCAAACT
TGAATGCANACTTGCAATTTCCTACNGGCATGTTTGTATATCAGTACCAGCAAAANTGAA
GTANTGTTGTACAAACGAAAACATATATTNCCCCGTANCNAGAATTGCTTGAGTTGTAAC
AATTCCANGNACTCTCTATTATTAAAAGAGTTNTGCATAGCCAAGTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6281#0      TCAGGAGGAAAAGGGCACTTTACAGACTCAGTTTGCAGATATAGAGAAGAGCAACGAAGA 60
consensus_6281#1      ------------------------------------------------------------
                                                                                  

consensus_6281#0      CACAAACCAAGCCCCGCAGCCTCGAGAACCAGCACAGGAGTTTGATACCGATGCTCATAT 120
consensus_6281#1      ------------------------------------------------------------
                                                                                  

consensus_6281#0      GGAAAAACAAACTGCAATGGAAGCATGAATTGGTGCTCCATACAGACGGTTGGTTCCATT 180
consensus_6281#1      ---------AACTGCAANGGGAGCCNGGATTGGTGNTNCAAACAGGNGGTTGGTTCCATT 51
                               ******** ** ***  * ******* * ** ****  *************

consensus_6281#0      -CAATGTATTGCACGAAAATGCTCCGTAACTATATGAAGTTGAGTTTTGGAAAATACATG 239
consensus_6281#1      TCAATGTATTGCNCGNNAANGNTCCGTAANTATATGNAGTTGNGTTTTGGAAAANANATG 111
                       *********** **  ** * ******* ****** ***** *********** * ***

consensus_6281#0      TGCCAAACTCGAATGCATACTTGCAAGTTTCCTACTG-CATGTTTGTATATCAGTACCAG 298
consensus_6281#1      NGCCAAACTTGAATGCANACTTGCAA-TTTCCTACNGGCATGTTTGTATATCAGTACCAG 170
                       ******** ******* ******** ******** * **********************

consensus_6281#0      CAAA-CTGAAGTACTGTTGTACAAACAAAAACATATATTTGCC-GTAGTGAGAATTGCTT 356
consensus_6281#1      CAAAANTGAAGTANTGTTGTACAAACGAAAACATATATTNCCCCGTANCNAGAATTGCTT 230
                      ****  ******* ************ ************  ** ***   **********

consensus_6281#0      GAGTTGTAACAATTCCATGTACTCTCTATTATTAAAAGAGCTCTGCATAGCCAAGTTGTA 416
consensus_6281#1      GAGTTGTAACAATTCCANGNACTCTCTATTATTAAAAGAGTTNTGCATAGCCAAGTTG-- 288
                      ***************** * ******************** * ***************  

consensus_6281#0      CACACGCAAAAAAAAAAAAA 436
consensus_6281#1      --------------------