These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6282#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 609 fasta sequence [CTCGCATTTTTGTATAATCAACAATGCGAGCTAAATGGCGAAAGAAACGTATGCGAAGATTGAAACGTAAACGTCGTCGTATGCGTGAGCGTTCGAAATAAACTCGATCATTCAACATGGAACAAGATCAACGGCAAAAATAATCAACGATTATCCGTCGATGAACTTTGTCTCTTTTCATTGTTTTGATATGATTTTGTTTCATACAAGAATAATAAAAAAAATACCAACACGAAGGGAAAAAA-----AA--AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCCGAAACCGAAAAACTTCTTTGGGAAAAACAAGGGGAAATGGAATTGGGGGGGGGCGAACCAAGGGGAAAAATCGGGGCAATTGAATTTGGGCCTTTGAGGGTGGCAAGGCCCACCCCCGGAGGGGGTCTTCAACAAATTGGGCCCCCCGGGCAAAAGTGTTTGGAAAAAACAGGTCCGAAAGGGCCGGGAGCCCCACCTTTGCCTCCCCCCCCGCCTTTTCCGGGAGGCCTCCCCGGAGTGGTTTCCCCAGGAAAGGACCGGCTCGTTTTTGTTG] [+] EMBL CA753785 [CTCGCATTTTTGTATAATCAACAATGCGAGCTAAATGGCGAAAGAAACGTATGCGAAGATTGAAACGTAAACGTCGTCGTATGCGTGAGCGTTCGAAATAAACTCGATCATTCAACATGGAACAAGATCAACGGCAAAAATAATCAACGATTATCCGTCGATGAACTTTGTCTCTTTTCATTGTTTTGATATGATTTTGTTTCATACAAGAATAATAAAAAAAATACCAACACGAAGGGAAAAAA AA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL CA756373 [ ATAATCAACAATGCGAGCTAAATGGCGAAAGAAACGTATGCGAAGATTGAAACGTAAACGTCGTCGTATGCGTGAGCGTTCGAAATAAACTCGATCATTCAACATGGAACAAGATCAACGGCAAAAATAATCAACGATTATCCGTCGATGAACTTTGTCTCTTTTCATTGTTTTGATATGATTTTGTTTCATACAAGAATAATAAAAAAAATACCAACACGAAGGGAAACAACTGTGAACNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCCGAAACCGAAAAACTTCTTTGGGAAAAACAAGGGGAAATGGAATTGGGGGGGGGCGAACCAAGGGGAAAAATCGGGGCAATTGAATTTGGGCCTTTGAGGGTGGCAAGGCCCACCCCCGGAGGGGGTCTTCAACAAATTGGGCCCCCCGGGCAAAAGTGTTTGGAAAAAACAGGTCCGAAAGGGCCGGGAGCCCCACCTTTGCCTCCCCCCCCGCCTTTTCCGGGAGGCCTCCCCGGAGTGGTTTCCCCAGGAAAGGACCGGCTCGTTTTTGTTG] consensusID : consensus_6282#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 331 fasta sequence [CGCATTCTTGATTAATTCACAATGCGAGCTAAATGGCGAAAGAAACGTATGCGACGATTGAAACGTAAACGCCGTCGTATGCGTGAACGATCGAAATAAATTCGATCTTAATTCATCCAATTCGAAGCAAAATTCGGCTCAACGGTGATGGTACAGAAATCTGATCGATTCAATCTGTTCTTCGTTGTTTTGTTTCTTTTTTCTCGTTGTAAAAAAAAGCATACGGTCTTTTGTTTCACGGATGATATCATATAAAATAAAACCAAACAAAAAAAAAATACCAGAAAGAAAAAAAAACGGGGCAAAAGCCCGCACTAAANAAAAAAAAAAA] [+] EMBL CA754631 [CGCATTCTTGATTAATTCACAATGCGAGCTAAATGGCGAAAGAAACGTATGCGACGATTGAAACGTAAACGCCGTCGTATGCGTGAACGATCGAAATAAATTCGATCTTAATTCATCCAATTCGAAGCAAAATTCGGCTCAACGGTGATGGTACAGAAATCTGATCGATTCAATCTGTTCTTCGTTGTTTTGTTTCTTTTTTCTCGTTGTAAAAAAAAGCATACGGTCTTTTGTTTCACGGATGATATCATATAAAATAAAACCAAACAAAAAAAAAATACCAGAAAGAAAAAAAAACGGGGCAAAAGCCCGCACTAAANAAAAAAAAAAA] [+] EMBL CA755873 [ TTGATTAATTCACAATGCGAGCTAAATGGCGAAAGAAACGTATGCGACGATTGAAACGTAAACGCCGTCGTATGCGTGAACGATCGAAATAAATTCGATCTTAATTCATCCAATTCGAAGCAAAATTCGGCTCAACGGTGATGGTACAGAAATCTGATCGATTCAATCTGTTCTTCGTTGTTTTGTTTCTTTTTTCTCGTTGTAAAAAAAAGCATACGGTCTTTTGTTTCACGGATGATATCATATAAAATAAAACCAAACAAAAAAAAAATACAAGAAAGAAAAAAAAAC GGGCAAAAGCCCAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6282#0 CTCGCATTTTTGTATAATCAACAATGCGAGCTAAATGGCGAAAGAAACGTATGCGAAGAT 60 consensus_6282#1 --CGCATTCTTGATTAATTCACAATGCGAGCTAAATGGCGAAAGAAACGTATGCGACGAT 58 ****** *** **** ************************************ *** consensus_6282#0 TGAAACGTAAACGTCGTCGTATGCGTGAGCGTTCGAAATAAACTCGATC-------ATTC 113 consensus_6282#1 TGAAACGTAAACGCCGTCGTATGCGTGAACGATCGAAATAAATTCGATCTTAATTCATCC 118 ************* ************** ** ********** ****** ** * consensus_6282#0 AACATGGAACAAGATCAACGGCAAAAATAATCA-ACGATTATCCG-TCGATGAACTTTGT 171 consensus_6282#1 AATTCGAAGCAAAATTCGGCTCAACGGTGATGGTACAGAAATCTGATCGATTCAATCTGT 178 ** * * *** ** *** * ** ** *** * ***** * * *** consensus_6282#0 CTCTTTTCATTGTTTTGATATGATTTTGTTTCATACAAGAATAATAAAAAAAATACCAAC 231 consensus_6282#1 ---TCTTCGTTGTTTTGTT-TCTTTTTTCTCGTTGTAAAAAAAAGCATACGGTCTTTTGT 234 * *** ******** * * **** * * ** ** ** * * consensus_6282#0 ACGAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 291 consensus_6282#1 TTCACGGATGATATCATATAAAATAAAACCAAACAAAAAAAAAATACCAGAAAGAAAAAA 294 * ** * * * * **** **** *** ********** * * *** ****** consensus_6282#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCCGAAACCGAAAAACTTC 351 consensus_6282#1 AAACGGGGCAAAAGCCCGCACTAAANAAAAAAAAAAA----------------------- 331 *** **** * *** *********** consensus_6282#0 TTTGGGAAAAACAAGGGGAAATGGAATTGGGGGGGGGCGAACCAAGGGGAAAAATCGGGG 411 consensus_6282#1 ------------------------------------------------------------ consensus_6282#0 CAATTGAATTTGGGCCTTTGAGGGTGGCAAGGCCCACCCCCGGAGGGGGTCTTCAACAAA 471 consensus_6282#1 ------------------------------------------------------------ consensus_6282#0 TTGGGCCCCCCGGGCAAAAGTGTTTGGAAAAAACAGGTCCGAAAGGGCCGGGAGCCCCAC 531 consensus_6282#1 ------------------------------------------------------------ consensus_6282#0 CTTTGCCTCCCCCCCCGCCTTTTCCGGGAGGCCTCCCCGGAGTGGTTTCCCCAGGAAAGG 591 consensus_6282#1 ------------------------------------------------------------ consensus_6282#0 ACCGGCTCGTTTTTGTTG 609 consensus_6282#1 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||