These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6297#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1383 fasta sequence [GTGGGCCCACACTGTCAGCCTCTCTCTCTCTCCCTCTACTCCCACCATCCGGGCGAAATCACTCGAGCTTCACACCTGTGTCAGATCTCGGAATCACTCCGCCGCCGCCGCCGCGGAGCTCGCCGTCGACTCCTCCTCCTCCTCCTCCTCTCACCATGGCGGCGCTGCTGCTTCGTAGGCTCGCCGGGACCCACCGCGGCCGCGTGCCTCTGGCCGCCGCCGCCGCCGTCACCGGTGGAGCGGCGCTCTTCTGCGCCTCGTCTCCCCCAACCATCGCGCTCATGGAGGAGAAGGGCGAGGATGCCGCTGCTAAAGTTGCGCTTAACCCAGACAAGTGGCTAGAGTTCAAGCTCCAGGAGAAGGCAACAGTTAGCCACAATTCACAATTATTTAGATTTTCGTTTGACCCATCTACTAAGTTGGGTCTTGATGTTGCTTCATGTCTCATAACAAGGGCTCCAATAGGAGAGGAAGTGGAGGGAGGAAGAAAATTTGTCATTCGCCCGTACACACCTATCTCTGATCCAGATTCTAAAGGATATTTTGACCTGCTAATCAAGGTTTATCCTGATGGGAAAATGAGTCAGTATTTCGCAAGTCTGAAACCAGGAGATGTTGTTGAGGTCAAAGGGCCCATTGAAAAGCTCAGATATAGCCCAAATATGAAGAAACAAATTGGCATGATCGCTGGTGGGACTGGCATAACACCAATGCTGCAGGTTGTCAGGGCTATCCTAAAAAACCCTGATGACAACACTCACGTTTCCTTAATTTATGCCAATGTGTCACCAGATGATATCTTGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTCAAGGTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGCTACATATCCAAGGACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTTGTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAGGATAGATCGCAGGGCGAGCTCACCGGCATTCTGAAAGAGTTAGGATACACTGCAGAGATGGTATACAAGTTCTGAGTGCGTCTTCAAGACGTTAGAATGCTGACATGCTTGCTGCAATGGCGCCATGGCAATGATCAAATAAACCACAGCTGAACACTTCTTTTATTATGCCACAGCAGTTGGGTTCCAGACTTGAGAAAGTTTTGACATTTCTCAATAATGTTCATTGAGAATCACATCTTTTTGCGTGGTTTGCTTCTGCGATATGTTCTTGCGGCCCATGCACCTGGATATGCATTGCTTCAGCCGTTTATGAGATGGTCTGGAATTGCCGTGGATGATCTTATAGAGATAGATCCATTCACAG] [+] EMBL AK071324 [GTGGGCCCACACTGTCAGCCTCTCTCTCTCTCCCTCTACTCCCACCATCCGGGCGAAATCACTCGAGCTTCACACCTGTGTCAGATCTCGGAATCACTCCGCCGCCGCCGCCGCGGAGCTCGCCGTCGACTCCTCCTCCTCCTCCTCCTCTCACCATGGCGGCGCTGCTGCTTCGTAGGCTCGCCGGGACCCACCGCGGCCGCGTGCCTCTGGCCGCCGCCGCCGCCGTCACCGGTGGAGCGGCGCTCTTCTGCGCCTCGTCTCCCCCAACCATCGCGCTCATGGAGGAGAAGGGCGAGGATGCCGCTGCTAAAGTTGCGCTTAACCCAGACAAGTGGCTAGAGTTCAAGCTCCAGGAGAAGGCAACAGTTAGCCACAATTCACAATTATTTAGATTTTCGTTTGACCCATCTACTAAGTTGGGTCTTGATGTTGCTTCATGTCTCATAACAAGGGCTCCAATAGGAGAGGAAGTGGAGGGAGGAAGAAAATTTGTCATTCGCCCGTACACACCTATCTCTGATCCAGATTCTAAAGGATATTTTGACCTGCTAATCAAGGTTTATCCTGATGGGAAAATGAGTCAGTATTTCGCAAGTCTGAAACCAGGAGATGTTGTTGAGGTCAAAGGGCCCATTGAAAAGCTCAGATATAGCCCAAATATGAAGAAACAAATTGGCATGATCGCTGGTGGGACTGGCATAACACCAATGCTGCAGGTTGTCAGGGCTATCCTAAAAAACCCTGATGACAACACTCACGTTTCCTTAATTTATGCCAATGTGTCACCAGATGATATCTTGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTATCCTAATTTCAAGGTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGCTACATATCCAAGGACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTTGTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAGGATAGATCGCAGGGCGAGCTCACCGGCATTCTGAAAGAGTTAGGATACACTGCAGAGATGGTATACAAGTTCTGAGTGCGTCTTCAAGACGTTAGAATGCTGACATGCTTGCTGCAATGGCGCCATGGCAATGATCAAATAAACCACAGCTGAACACTTCTTTTATTATGCCACAGCAGTTGGGTTCCAGACTTGAGAAAGTTTTGACATTTCTCAATAATGTTCATTGAGAATCACATCTTTTTGCGTGGTTTGCTTCTGCGATATGTTCTTGCGGCCCATGCACCTGGATATGCATTGCTTCAGCCGTTTATGAGATGGTCTGGAATTGCCGTGGATGATCTTATAGAGATAGATCCATTCACAG] [+] EMBL AK104306 [ TCAGATCTCGGAATCACTCCGCCGCCGCCGCCGCGGAGCTCGCCGTCGACTCCTCCTCCTCCTCCTCCTCTCACCATGGCGGCGCTGCTGCTTCGTAGGCTCGCCGGGACCCACCGCGGCCGCGTGCCTCTGGCCGCCGCCGCCGCCGTCACCGGTGGGGCGGCGCTCTTCTGCGCCTCGTCTCCCCCAACCATCGCGCTCATGGAGGAGAAGGGCGAGGATGCCGCTGCTAAAGTTGCGCTTAACCCAGACAAGTGGCTAGAGTTCAAGCTCCAGGAGAAGGCAACAGTTAGCCACAATTCACAATTATTTAGATTTTCGTTTGACCCATCTACTAAGTTGGGTCTTGATGTTGCTTCATGTCTCATAACAAGGGCTCCAATAGGGGAGGAAGTGGAGGGAGGAAGAAAATTTGTCATTCGCCCGTACACACCTATCTCTGATCCAGATTCTAAAGGATATTTTGACCTGCTAATCAAGGTTTATCCTGATGGGAAAATGAGTCAGTATTTCGCAAGTCTGAAACCAGGAGATGTTGTTGAGGTCAAAGGGCCCATTGAAAAGCCCAGATATAGCCCAAATATGAAGAAACAAATTGGCATGATCGCTGGTGGGACTGGCATAACACCAATGCTGCAGGTTGTCAGGGCTATCCTAAAAAACCCTGATGACAACACTCAGGTTTCCTTAATTTATGCCAATGTGTCACCAGATGATATCTTGCTGAAAAGGGAACTAGATAGACTTGCCAGTAGCTAACCTAATTTCAAGGTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGTTGGCTACATATCCAAGGACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTTGTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAGGATAGATCGCAGGGCGAGCTCACCGGCATTCTGAAAGAGTTAGGATACACTGCAGAGATGGTATACAAGTTCTGAGTGCGTCTTCAAGACGTTAGAATGCTGACATGCTTGCTGCAATGGCGCCATGGCAATGATCAAATAAACCACAGCTGAACACTTCTTTTATTATGCCACAGCAGTTGGGTTCCAGACTTGAGAAAGTTTTGACATTTCTCAATAATGTTCATTGAGAATCACATCTTTTTGCGTGGTTTGCTTCTGCGATATGTTCTTGCGGCCCATGCACCTGGATATGCATTGCTTCAGCCGTTTATGAGATGGTCTGGAATTGCCGTGGATGATCTTATAGAGATAG ] [+] EMBL CA998108 [ CAAATGATTGGAGGGGTGGTGTTGGCTACATATCCAAGGACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCTGATCCTTGTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAGGATAGATCGCAGGGCGAGCTCACCGGCATTCTGAAAGAGTTAGGATACACTGCAGAGATGGTATACAAGTTCTGAGTGCGTCTTCAAGACGTTAGAATGCTGACATGCTTGCTGCAATGGCGC ] consensusID : consensus_6297#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence [GATCTCGGAATCACTCCGCCGCCGCCGCCGCGGAGCTCGCCGTCGACTCCTCCTCCTCCTCCTCCTCTCACCATGGCGGCGCTGCTGCTTCGTAGGCTCGCCGGGACCCACCGCGGCCGCGTGCCTCTGGCCGCCGCCGCCGCCGTCACCGGTGGAGCGGCGCTCTTCTGCGCCTCGTCTCCCCCAACCATCGCGCTCATGGAGGAGAAGGGCGAGGATGCCGCTGCTAAAGTTGCGCTTAACCCCGACCAGTGGCTAGAGGTTCAGCCCCCGGAGAAGGCAACAGTTAGCCACCATTCACAATTATTTAGATTTTCGTTTGACCCCTCTACCAAGTTGGGTCTGGATGTTGCCTCCTGTCTCATAACCAGGGGCCCCCTAGGAAAAGGAATTGGAGGGAGGAAGAAATTTTGTCCTTCCCCCCGTACCCCCCTTCTCCGCTCTCAATTCTAAAGGATTTTTTGAACTCCTATTCAGGTTTATT] [+] EMBL CA753505 [GATCTCGGAATCACTCCGCCGCCGCCGCCGCGGAGCTCGCCGTCGACTCCTCCTCCTCCTCCTCCTCTCACCATGGCGGCGCTGCTGCTTCGTAGGCTCGCCGGGACCCACCGCGGCCGCGTGCCTCTGGCCGCCGCCGCCGCCGTCACCGGTGGAGCGGCGCTCTTCTGCGCCTCGTCTCCCCCAACCATCGCGCTCATGGAGGAGAAGGGCGAGGATGCCGCTGCTAAAGTTGCGCTTAACCCCGACCAGTGGCTAGAGGTTCAGCCCCCGGAGAAGGCAACAGTTAGCCACCATTCACAATTATTTAGATTTTCGTTTGACCCCTCTACCAAGTTGGGTCTGGATGTTGCCTCCTGTCTCATAACCAGGGGCCCCCTAGGAAAAGGAATTGGAGGGAGGAAGAAATTTTGTCCTTCCCCCCGTACCCCCCTTCTCCGCTCTCAATTCTAAAGGATTTTTTGAACTCCTATTCAGGTTTATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6297#0 GTGGGCCCACACTGTCAGCCTCTCTCTCTCTCCCTCTACTCCCACCATCCGGGCGAAATC 60 consensus_6297#1 ------------------------------------------------------------ consensus_6297#0 ACTCGAGCTTCACACCTGTGTCAGATCTCGGAATCACTCCGCCGCCGCCGCCGCGGAGCT 120 consensus_6297#1 -----------------------GATCTCGGAATCACTCCGCCGCCGCCGCCGCGGAGCT 37 ************************************* consensus_6297#0 CGCCGTCGACTCCTCCTCCTCCTCCTCCTCTCACCATGGCGGCGCTGCTGCTTCGTAGGC 180 consensus_6297#1 CGCCGTCGACTCCTCCTCCTCCTCCTCCTCTCACCATGGCGGCGCTGCTGCTTCGTAGGC 97 ************************************************************ consensus_6297#0 TCGCCGGGACCCACCGCGGCCGCGTGCCTCTGGCCGCCGCCGCCGCCGTCACCGGTGGAG 240 consensus_6297#1 TCGCCGGGACCCACCGCGGCCGCGTGCCTCTGGCCGCCGCCGCCGCCGTCACCGGTGGAG 157 ************************************************************ consensus_6297#0 CGGCGCTCTTCTGCGCCTCGTCTCCCCCAACCATCGCGCTCATGGAGGAGAAGGGCGAGG 300 consensus_6297#1 CGGCGCTCTTCTGCGCCTCGTCTCCCCCAACCATCGCGCTCATGGAGGAGAAGGGCGAGG 217 ************************************************************ consensus_6297#0 ATGCCGCTGCTAAAGTTGCGCTTAACCCAGACAAGTGGCTAGAGTTCAAGCTCCAGGAGA 360 consensus_6297#1 ATGCCGCTGCTAAAGTTGCGCTTAACCCCGACCAGTGGCTAGAGGTTCAGCCCCCGGAGA 277 **************************** *** *********** * *** ** ***** consensus_6297#0 AGGCAACAGTTAGCCACAATTCACAATTATTTAGATTTTCGTTTGACCCATCTACTAAGT 420 consensus_6297#1 AGGCAACAGTTAGCCACCATTCACAATTATTTAGATTTTCGTTTGACCCCTCTACCAAGT 337 ***************** ******************************* ***** **** consensus_6297#0 TGGGTCTTGATGTTGCTTCATGTCTCATAACAAGGGCTCCAATAGGAGA-GGAAGTGGAG 479 consensus_6297#1 TGGGTCTGGATGTTGCCTCCTGTCTCATAACCAGGGGCCCCCTAGGAAAAGGAATTGGAG 397 ******* ******** ** *********** **** ** ***** * **** ***** consensus_6297#0 GGAGGAAGAAAATTTGTCATTCGCCC-GTACACACCTATCTCTGATCCAGATTCTAAAGG 538 consensus_6297#1 GGAGGAAGAAATTTTGTCCTTCCCCCCGTACCCCCCT-TCTCCGCTCTCAATTCTAAAGG 456 *********** ****** *** *** **** * *** **** * ** ********** consensus_6297#0 ATATTTTGACCTGCTAATCAAGGTTTATCCTGATGGGAAAATGAGTCAGTATTTCGCAAG 598 consensus_6297#1 ATTTTTTGAACTCCTATTCA-GGTTTATT------------------------------- 484 ** ****** ** *** *** ******* consensus_6297#0 TCTGAAACCAGGAGATGTTGTTGAGGTCAAAGGGCCCATTGAAAAGCTCAGATATAGCCC 658 consensus_6297#1 ------------------------------------------------------------ consensus_6297#0 AAATATGAAGAAACAAATTGGCATGATCGCTGGTGGGACTGGCATAACACCAATGCTGCA 718 consensus_6297#1 ------------------------------------------------------------ consensus_6297#0 GGTTGTCAGGGCTATCCTAAAAAACCCTGATGACAACACTCACGTTTCCTTAATTTATGC 778 consensus_6297#1 ------------------------------------------------------------ consensus_6297#0 CAATGTGTCACCAGATGATATCTTGCTGAAAAGGGAATTAGATAGACTTGCCAGTAGCTA 838 consensus_6297#1 ------------------------------------------------------------ consensus_6297#0 TCCTAATTTCAAGGTATTCTACACGGTGGACAAACCATCAAATGATTGGAGGGGTGGTGT 898 consensus_6297#1 ------------------------------------------------------------ consensus_6297#0 TGGCTACATATCCAAGGACATTGCCTTGAAAGGTTTGCCACGGCCAGGGGAGGATTCTCT 958 consensus_6297#1 ------------------------------------------------------------ consensus_6297#0 GATCCTTGTTTGTGGTCCTCCAGGTATGATGAATCATATATCCGGTGACAAGGCAAAGGA 1018 consensus_6297#1 ------------------------------------------------------------ consensus_6297#0 TAGATCGCAGGGCGAGCTCACCGGCATTCTGAAAGAGTTAGGATACACTGCAGAGATGGT 1078 consensus_6297#1 ------------------------------------------------------------ consensus_6297#0 ATACAAGTTCTGAGTGCGTCTTCAAGACGTTAGAATGCTGACATGCTTGCTGCAATGGCG 1138 consensus_6297#1 ------------------------------------------------------------ consensus_6297#0 CCATGGCAATGATCAAATAAACCACAGCTGAACACTTCTTTTATTATGCCACAGCAGTTG 1198 consensus_6297#1 ------------------------------------------------------------ consensus_6297#0 GGTTCCAGACTTGAGAAAGTTTTGACATTTCTCAATAATGTTCATTGAGAATCACATCTT 1258 consensus_6297#1 ------------------------------------------------------------ consensus_6297#0 TTTGCGTGGTTTGCTTCTGCGATATGTTCTTGCGGCCCATGCACCTGGATATGCATTGCT 1318 consensus_6297#1 ------------------------------------------------------------ consensus_6297#0 TCAGCCGTTTATGAGATGGTCTGGAATTGCCGTGGATGATCTTATAGAGATAGATCCATT 1378 consensus_6297#1 ------------------------------------------------------------ consensus_6297#0 CACAG 1383 consensus_6297#1 ----- 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Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||