cluster # 6308

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Oryza sativa
cluster # 6308 cluster # 6308 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6308#0 length = 787 sequences # 3

consensus_6308#1 length = 535 sequences # 1

consensusID : consensus_6308#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 787
fasta sequence

                              [CAATTCATCAATTATTTTGGGTGGTAGTTGGAAACCCACGCATAGTACAGTTTGCAGTTTGACTCAGTTAACACGGAATACGCTGAACTGCATAGCAAGCAGCAACTTACTCAGTGAAACATGAGTAGTTGGGTAAAACACTCCAACAAATGTTATACAAGATCCTGTGGGTCATCCATCTTCTCACTTCTCGGCGCTAATATAGTACAGGGAGATATATGGAGCAACAAATGTGTACATACGGTTTTGCTCTAGTACAGGGAAACACTGCGAAAAGCGGTGCTAGAGGCCTATTCTCTCAGCATTGTAAAGATACCATGGTTTTTTATGAGGTTCTAATGCTTGGTGTTAGCATTTTGTAACGTTCAGATCCTTGCGATCGATGGAGCTACCTGTGCAGCCATTACAGGCCATTTCCAACTGCTACGTAGTAACTAAAAGCACATTTTGCAGTTACAGAATCCCAAGTACTTAATCCTTGGGAAGGGTGAGATCATCAGCAGAAGCTACCCTTTTTCCATTATAACGCTGCTTCCCGAAGGAGAATGGAACATATCTGTATTTTATCATATGAAGAATCTGTCGCTTCATTGTGACTGTAAACAAAACCACCCAATAGAATAGAAGAATAGGCCAAAACACAGGCACATCGAACACACTGAAGAACGTCAGGACAAAAGCAATACAGAATGCTTTAACAATGGAATACCTGTAAAGGAGAAAGTCAAATTAAAGTTAGTTTTATCTGTCAAAGAAAAAATAACTTCACAGAAAACACAGCAGACAT]

[-] EMBL CA767281             [CAATTCATCAATTATTTTGGGTGGTAGTTGAAAACCCACGCATAGTACAGTTTGCAGTTTGACTCAGTTAACACGGAATACGCTGAACTGCATAGCAAGCAGCAACTTACTCAGTGAAACATGAGTAGTTGGGTAAAACACTCCAACAAATGTTATACAAGATCCTGTGGGTCATCCATCTTCTCACTTCTCGGCGCTAATATAGTACAGGGAGATATATGGAGCAACAAATGTGTACATACGGTTTTGCTCTAGTACAGGGAAACACTGCGAAAAGCGGTGCTAGAGGCCTATTCTCTCAGCATTGTAAAGATACCATGGTTTTTTATGAGGTTCTAATGCTTGGTGTTAGCATTTTGTAACGTTCAGATCCTTGCGATCGATGGAGCTACCTGTGCAGCCATTACAGGCCATTTCCAACTGCTACGTAGTAACTAAAAGCACATTTTGCAGTTACAGAATCCCAAGTACTTAATCCTTGGGAAGGGTGAGATCATCAGCAGAAGCTACCCTTTTTCCATTATAACGCTGCTTCCCGAAGGAGAATGGAACATATCTGTATTTTATCATATGAAGAATCTGTCGCTTCATTGTGACTATAAACAAAACCACCCAATAGAATAGAAGAATAGGCCAAAACACA                                                                                                                                                ]
[+] EMBL CB647402             [   tcctttttTTATTTTGGGTGGTAGTTGGAAACCCACGCATAGTCCAGTTTGCAGTTTGACTCAGTTAACACGGAATACGCTGAACTGCATAGCAAGCAGCAACTTACTCAGTGAAACATGAGTAGTTGGGTAAAACACTCCAACAAATGTTATACAAGATCCTGTGGGTCATCCATCTTCTCACTTCTCGGCGCTAATATAGTACAGGGAGATATATGGAGCAACAAATGTGTACATACGGTTTTGCTCTAGTACAGGGAAACACTGCGAAAAGCGGTGCTAGAGGCCTATTCTCTCAGCATTGTAAAGATACCATGGTTTTTTATGAGGTTCTAATGCTTGGTGTTAGCATTTTGTAACGTTCAGATCCTTGCGATCGATGGAGCTACCTGTGCAGCCATTACAGGCCATTTCCAACTGCTACGTAGTAACTAAAAGCACATTTTGCAGTTACAGAATCCCAAGTACTTAATCCTTGGGAAGGGTGAGATCATCAGCAGAAGCTACCCTTTTTCCATTATAACGCTGCTTCCCGAAGGAGAATGGAACATATCTGTATTTTATCATATGAAGAATCTGTCGCTTCATTGTGACTGTAAACAAAACCACCCAATAGAATAGAAGAATAGGCCAAAACACAGGCACATCGAACACACTGAAGAACGTCAGGACAAAAGCAATACAGAATGCTTTAACAATGGAATACCTGTAAAGGAGAAAGTCAAATTAAAGTTAGTTTTATCTGTCAAAGAAAAAATAACTTCACAGAAAACACAGCAGACAT]
[+] EMBL CB647447             [                        TAGTTGGAAACCCACGCATAGTACATTTTGCAGTTTGACTCAGTTAACACGGAATACGCTGAACTGCATAGCAAGCAGCAACTTACTCAGTGAAACATGAGTAGTTGGGTAAAACACTCCAACAAATGTTATACAAGATCCTGTGGGTCATCCATCTTCTCACTTCTCGGCGCTAATATAGTACAGGGAGATATATGGAGCAACAAATGTGTACATACGGTTTTGCTCTAGTACAGGGAAACACTGCGAAAAGCGGTGCTAGAGGCCTATTCTCTCAGCATTGTAAAGATACCATGGTTTTTTATGAGGTTCTAATGCTTGGTGTTAGCATTTTGTAACGTTCAGATCCTTGCGATCGATGGAGCTACCTGTGCAGCCATTACAGGCCATTTCCAACTGCTACGTAGTAACTAAAAGCACATTTTGCAGTTACAGAATCCCAAGTACTTAATCCTTGGGAAGGGTGAGATCATCAGCAGAAGCTACCCTTTTTCCATTATAACGCTGCTTCCCGAAGGAGAATGGAACATATCTGTATTTTATCATATGAAGAATCTGTCGCTTCATTGTGACTGTAAACAAAACCACCCAATAGAATAGAAGAATAGGCCAAAACACAGGCACATCGAACACACTGAAGAACGTCCGGACAAAAGCAATACAGAATGCTTTAACAATGGAATACCTGTAAAGGAGAAAGTCAAATTAAAGTTAG                                                ]




>consensus_6308#0
CAATTCATCAATTATTTTGGGTGGTAGTTGGAAACCCACGCATAGTACAGTTTGCAGTTT
GACTCAGTTAACACGGAATACGCTGAACTGCATAGCAAGCAGCAACTTACTCAGTGAAAC
ATGAGTAGTTGGGTAAAACACTCCAACAAATGTTATACAAGATCCTGTGGGTCATCCATC
TTCTCACTTCTCGGCGCTAATATAGTACAGGGAGATATATGGAGCAACAAATGTGTACAT
ACGGTTTTGCTCTAGTACAGGGAAACACTGCGAAAAGCGGTGCTAGAGGCCTATTCTCTC
AGCATTGTAAAGATACCATGGTTTTTTATGAGGTTCTAATGCTTGGTGTTAGCATTTTGT
AACGTTCAGATCCTTGCGATCGATGGAGCTACCTGTGCAGCCATTACAGGCCATTTCCAA
CTGCTACGTAGTAACTAAAAGCACATTTTGCAGTTACAGAATCCCAAGTACTTAATCCTT
GGGAAGGGTGAGATCATCAGCAGAAGCTACCCTTTTTCCATTATAACGCTGCTTCCCGAA
GGAGAATGGAACATATCTGTATTTTATCATATGAAGAATCTGTCGCTTCATTGTGACTGT
AAACAAAACCACCCAATAGAATAGAAGAATAGGCCAAAACACAGGCACATCGAACACACT
GAAGAACGTCAGGACAAAAGCAATACAGAATGCTTTAACAATGGAATACCTGTAAAGGAG
AAAGTCAAATTAAAGTTAGTTTTATCTGTCAAAGAAAAAATAACTTCACAGAAAACACAG
CAGACAT

consensusID : consensus_6308#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 535
fasta sequence

                              [TTTCCAAGTGTTAAGTAGTAACTAAAGCACATATTGCAGGTACAGAATCCCAAGTANTTAATCCTTGGAAGGGGTGAGATCATCAGCAGAAGCTACCTTTTTCCCATTATAACGGTGCTTCCCGAAGGAGAATGGAACATATCTGTATTTTATCATATGAAGGATCTGTCGCTTCATGGTGACTGTAAACAAAACCACCCAATAGAATAGAAGAATAGGCCAAAACACAGGCACATCGCACACACTGAAGGACGTCAGGACAAAAGCGATACAGAATGCTTTAACAATGGCATACCAGAATTTGAACTCCGGAAGGCGACGGACGAAAGGGCGGAACTCGTCAGATGCGCGGGTGGGGAGCGCGGCCCCCCCCTCGCCGAGCACCTCGGCGACCTCGGGGTCGACCTGGGGCGAGAGGAAGGCGATGAGGAGGTTGAGGATGTAGATGCCGAGGGCGTAGGTCACGATGTAGTACCCTCCCGCGAACCAGACACGCAGCGCGTACGCGGCCGCCACGCCGGCGAAGGCCAGCCAC]

[-] EMBL CA753165             [TTTCCAAGTGTTAAGTAGTAACTAAAGCACATATTGCAGGTACAGAATCCCAAGTANTTAATCCTTGGAAGGGGTGAGATCATCAGCAGAAGCTACCTTTTTCCCATTATAACGGTGCTTCCCGAAGGAGAATGGAACATATCTGTATTTTATCATATGAAGGATCTGTCGCTTCATGGTGACTGTAAACAAAACCACCCAATAGAATAGAAGAATAGGCCAAAACACAGGCACATCGCACACACTGAAGGACGTCAGGACAAAAGCGATACAGAATGCTTTAACAATGGCATACCAGAATTTGAACTCCGGAAGGCGACGGACGAAAGGGCGGAACTCGTCAGATGCGCGGGTGGGGAGCGCGGCCCCCCCCTCGCCGAGCACCTCGGCGACCTCGGGGTCGACCTGGGGCGAGAGGAAGGCGATGAGGAGGTTGAGGATGTAGATGCCGAGGGCGTAGGTCACGATGTAGTACCCTCCCGCGAACCAGACACGCAGCGCGTACGCGGCCGCCACGCCGGCGAAGGCCAGCCAC]




>consensus_6308#1
TTTCCAAGTGTTAAGTAGTAACTAAAGCACATATTGCAGGTACAGAATCCCAAGTANTTA
ATCCTTGGAAGGGGTGAGATCATCAGCAGAAGCTACCTTTTTCCCATTATAACGGTGCTT
CCCGAAGGAGAATGGAACATATCTGTATTTTATCATATGAAGGATCTGTCGCTTCATGGT
GACTGTAAACAAAACCACCCAATAGAATAGAAGAATAGGCCAAAACACAGGCACATCGCA
CACACTGAAGGACGTCAGGACAAAAGCGATACAGAATGCTTTAACAATGGCATACCAGAA
TTTGAACTCCGGAAGGCGACGGACGAAAGGGCGGAACTCGTCAGATGCGCGGGTGGGGAG
CGCGGCCCCCCCCTCGCCGAGCACCTCGGCGACCTCGGGGTCGACCTGGGGCGAGAGGAA
GGCGATGAGGAGGTTGAGGATGTAGATGCCGAGGGCGTAGGTCACGATGTAGTACCCTCC
CGCGAACCAGACACGCAGCGCGTACGCGGCCGCCACGCCGGCGAAGGCCAGCCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6308#0      CAATTCATCAATTATTTTGGGTGGTAGTTGGAAACCCACGCATAGTACAGTTTGCAGTTT 60
consensus_6308#1      ------------------------------------------------------------
                                                                                  

consensus_6308#0      GACTCAGTTAACACGGAATACGCTGAACTGCATAGCAAGCAGCAACTTACTCAGTGAAAC 120
consensus_6308#1      ------------------------------------------------------------
                                                                                  

consensus_6308#0      ATGAGTAGTTGGGTAAAACACTCCAACAAATGTTATACAAGATCCTGTGGGTCATCCATC 180
consensus_6308#1      ------------------------------------------------------------
                                                                                  

consensus_6308#0      TTCTCACTTCTCGGCGCTAATATAGTACAGGGAGATATATGGAGCAACAAATGTGTACAT 240
consensus_6308#1      ------------------------------------------------------------
                                                                                  

consensus_6308#0      ACGGTTTTGCTCTAGTACAGGGAAACACTGCGAAAAGCGGTGCTAGAGGCCTATTCTCTC 300
consensus_6308#1      ------------------------------------------------------------
                                                                                  

consensus_6308#0      AGCATTGTAAAGATACCATGGTTTTTTATGAGGTTCTAATGCTTGGTGTTAGCATTTTGT 360
consensus_6308#1      ------------------------------------------------------------
                                                                                  

consensus_6308#0      AACGTTCAGATCCTTGCGATCGATGGAGCTACCTGTGCAGCCATTACAGGCCATTTCCAA 420
consensus_6308#1      -----------------------------------------------------TTTCCAA 7
                                                                           *******

consensus_6308#0      CTGCTACGTAGTAACTAAAAGCACATTTTGCAGTTACAGAATCCCAAGTACTTAATCCTT 480
consensus_6308#1      GTGTTAAGTAGTAACTAAA-GCACATATTGCAGGTACAGAATCCCAAGTANTTAATCCTT 66
                       ** ** ************ ****** ****** **************** *********

consensus_6308#0      GGGAAGGGTGAGATCATCAGCAGAAGCTACCCTTTTTCCATTATAACGCTGCTTCCCGAA 540
consensus_6308#1      GGAAGGGGTGAGATCATCAGCAGAAGCTACCTTTTTCCCATTATAACGGTGCTTCCCGAA 126
                      ** * ************************** **** *********** ***********

consensus_6308#0      GGAGAATGGAACATATCTGTATTTTATCATATGAAGAATCTGTCGCTTCATTGTGACTGT 600
consensus_6308#1      GGAGAATGGAACATATCTGTATTTTATCATATGAAGGATCTGTCGCTTCATGGTGACTGT 186
                      ************************************ ************** ********

consensus_6308#0      AAACAAAACCACCCAATAGAATAGAAGAATAGGCCAAAACACAGGCACATCGAACACACT 660
consensus_6308#1      AAACAAAACCACCCAATAGAATAGAAGAATAGGCCAAAACACAGGCACATCGCACACACT 246
                      **************************************************** *******

consensus_6308#0      GAAGAACGTCAGGACAAAAGCAATACAGAATGCTTTAACAATGGAATACCTGTA------ 714
consensus_6308#1      GAAGGACGTCAGGACAAAAGCGATACAGAATGCTTTAACAATGGCATACCAGAATTTGAA 306
                      **** **************** ********************** ***** * *      

consensus_6308#0      ------AAGGAGAAAGTCAAAT---TAAAGTTAGTTTTATCTGTCAAAGAAAAAATAA-- 763
consensus_6308#1      CTCCGGAAGGCGACGGACGAAAGGGCGGAACTCGTCAGATGCGCGGGTGGGGAGCGCGGC 366
                            **** **  * * **       *  * **   **  *     *   *       

consensus_6308#0      -----CTTCACAGAAAACACAGCAGACAT------------------------------- 787
consensus_6308#1      CCCCCCCTCGCCGAGCACCTCGGCGACCTCGGGGTCGACCTGGGGCGAGAGGAAGGCGAT 426
                           * ** * **  **   *  *** *                               

consensus_6308#0      ------------------------------------------------------------
consensus_6308#1      GAGGAGGTTGAGGATGTAGATGCCGAGGGCGTAGGTCACGATGTAGTACCCTCCCGCGAA 486
                                                                                  

consensus_6308#0      -------------------------------------------------
consensus_6308#1      CCAGACACGCAGCGCGTACGCGGCCGCCACGCCGGCGAAGGCCAGCCAC 535