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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6312#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2280 fasta sequence
[CGCCGCCGTCTCGCGCAGCTGCCAGGCCACCACTGTGCGCGCGATGCTCTTTGCCCCCCGCGAAGACGAGCAGCGGCAGCAGCTTCCATGCTTGGCGATTCGATGCCATGTAGGAAGACGAAGATGATGAAGCTAGCGTAGCCTAGTGATGGCTCAACCCGCCATGGAAGGGACGGTGCAGGGTGGAGGAGGAGGAGGAGGAGGAGCACAAGAACCTCGCGGACAGTACGGCGGAGGCGGCAAGAACGGCGGCGACGCCTCCCCGCGCAAGCATGCCGCTGCCGCTGCCGCTGCCGCCTTGCCGCGACACCGGCGATCCAAGAGTGCTTCTTCCGATCGGAGCCTGGAGCCATGCAAGCACGCGGCGTTGCACGATCAGCGCTGCACCCAAGCAGCACAGGCGACGCCGAGCTCTCATCACCAACCGGACGCGACGACGAGGAAATCCCACGCCGCCGCCGCCGCCGCCGCCGAGGGCTCCTCCATCCACCATGTACTGACGAGAGATCGCAGCAGGGCGAGCGCGTCGCCGAGCCATCGCGTCTCGCTGGAGAATGATATCAGGCAGCTGCAGCTTAACCTGCATCAGGAGAGGTCGATCCGGATCATGCTTGACCGGGCGATTGGCCGCGCATCCAGCACTCTGTCTCCTGGCCACATGCATTTCCCAGCTCAGACAAAGGAACTGATTGCAGAGATTGAATTGCTTGAAGAGGAAATCGCAAACCGTGAGCAGCATGTTCTTACCCTCTACAGAAGCATCTTCGATCAATCTGCGTCTGGAGCATCCTCAGGGCAGAGTTCTGGTCTTTCTTCCCCAGCGCATACCAAGAGTATCAGCTCTAGAACAAGACGGCATCCGAGCATAATATCGAGTGCATTTTGCTCATCTAAGAAGCTCCCGCTCCAACCTTTCCAAATCATGACATCGGTATCGGAGTCGGGGAGATCGAAGAGTATGCTGAAAACCAAGATTAAGCATGAATC-TTTCTCAAGTGAAACA-TTGGATATTCACCCTGCAACCTTCCCACCAGATCCAAGGAAGCTTCCTTATTCAGGAAGTAGTTCTTTGACTCGGACCCTGAAAGATCACCTCTACCAATGTCCAAGCAAAATATCCGAAGAAATGGTTAGATGCATGGCCTCCATATACTGTCTTCTTCGCACCGAGTGTCCCGAAAACCCTGAAAAGGTCCGTTCA-CCATTCTTG-TCGAGGTCATCAACAAATGTCATTATTCCTCGGAGAGGAAACGGAGAGGACACTAATTTGTCAAACACCAAATGTACGGTGGAAGTATCTTCAATATCAGCTGATAAGAATCACATGCCAGATGTCTCTTATGCAATTACGCACTACAGGTTGCTTGTGGAGCAGCTTGAAAGGGTTGATCTGAGTATGTCAGAAACCAATATTAAATTGGCCTTCTGGATCAATGTGTATAATTCTCTTGTCATGCATGCATATCTAGCATATGGCATTCCAAACAGTTCTCTGAGAAGAATGGCTCTATTTCACAAGGCTGCCTACAATATTGGAGGCCATGCAGTCACGGCCAATTCCATCGAACACGCTCTACTATGCTGCAGATCTCCACGGATTGGTCGTTGGTTTGAATCCATACTGTCGACGGCGATGCGGAAGAAATGCGCAGATGAGAAGCAACTCGTCCAGCTCAAATTCGGCCTGCCGGACTGCCAGCCTCTCGCCCTGTTCGCTCTGTGCACAGGAGCTTCATCTGATCCCATGCTGAAGGTGTACACGGCGAAGAACATCAGTGAGGAGCTGGAGCGTGCGAAGCGGGAGTTCCTGCAGGCGAGCGTGGTGGTGAGGAAGTCCAAGAAGGTGTTCCTGCCGCGCCTCGTCGAGCGGTACGCCCGGGAGGCCGGCCTCGCCGGCGCCGACGAGCTCCTCGCGTGGGCGCGCGACAACGCCGACGCCCGCGCCACCCAGGACGCCATCCAGCGGCTGTGCGTCGACGCCGGCGGCGGCCGGAGGAAGGCAGCGCAGGCCGTCGAGTGGCTCCCCTACAACGCCAGGTTCCGCTACGCCTTCCCCCGGACCATGGTCGACAAGCCACTCTTCTGAGCAAGAAACAAGCGTACATTCTGATGCTCCAATGTTTCGCGCTGCATTGTTGTTTTGTGATCTTGAGATGAAGAATTGAAGATGAGATGAGATCAGTGACAAGTTCAGAAGTGCTACATCTATTTTTGCTGTGCCGTGTACAGAATTGGATTGTTGCTAATATCTAGTAGCCATGGATTCCTTGAAAAAAAAAA]
[+] EMBL AK105615 [CGCCGCCGTCTCGCGCAGCTGCCAGGCCACCACTGTGCGCGCGATGCTCTTTGCCCCCCGCGAAGACGAGCAGCGGCAGCAGCTTCCATGCTTGGCGATTCGATGCCATGTAGGAAGACGAAGATGATGAAGCTAGCGTAGCCTAGTGATGGCTCAACCCGCCATGGAAGGGACGGTGCAGGGTGGAGGAGGAGGAGGAGGAGGAGCACAAGAACCTCGCGGACAGTACGGCGGAGGCGGCAAGAACGGCGGCGACGCCTCCCCGCGCAAGCATGCCGCTGCCGCTGCCGCTGCCGCCTTGCCGCGACACCGGCGATCCAAGAGTGCTTCTTCCGATCGGAGCCTGGAGCCATGCAAGCACGCGGCGTTGCACGATCAGCGCTGCACCCAAGCAGCACAGGCGACGCCGAGCTCTCATCACCAACCGGACGCGACGACGAGGAAATCCCACGCCGCCGCCGCCGCCGCCGCCGAGGGCTCCTCCATCCACCATGTACTGACGAGAGATCGCAGCAGGGCGAGCGCGTCGCCGAGCCATCGCGTCTCGCTGGAGAATGATATCAGGCAGCTGCAGCTTAACCTGCATCAGGAGAGGTCGATCCGGATCATGCTTGACCGGGCGATTGGCCGCGCATCCAGCACTCTGTCTCCTGGCCACATGCATTTCCCAGCTCAGACAAAGGAACTGATTGCAGAGATTGAATTGCTTGAAGAGGAAATCGCAAACCGTGAGCAGCATGTTCTTACCCTCTACAGAAGCATCTTCGATCAATCTGCGTCTGGAGCATCCTCAGGGCAGAGTTCTGGTCTTTCTTCCCCAGCGCATACCAAGAGTATCAGCTCTAGAACAAGACGGCATCCGAGCATAATATCGAGTGCATTTTGCTCATCTAAGAAGCTCCCGCTCCAACCTTTCCAAATCATGACATCGGTATCGGAGTCGGGGAGATCGAAGAGTATGCTGAAAACCAAGATTAAGCATGAATC TTTCTCAAGTGAAACA TTGGATATTCACCCTGCAACCTTCCCACCAGATCCAAGGAAGCTTCCTTATTCAGGAAGTAGTTCTTTGACTCGGACCCTGAAAGATCACCTCTACCAATGTCCAAGCAAAATATCCGAAGAAATGGTTAGATGCATGGCCTCCATATACTGTCTTCTTCGCACCGAGTGTCCCGAAAACCCTGAAAAGGTCCGTTCA CCATTCTTG TCGAGGTCATCAACAAATGTCATTATTCCTCGGAGAGGAAACGGAGAGGACACTAATTTGTCAAACACCAAATGTACGGTGGAAGTATCTTCAATATCAGCTGATAAGAATCACATGCCAGATGTCTCTTATGCAATTACGCACTACAGGTTGCTTGTGGAGCAGCTTGAAAGGGTTGATCTGAGTATGTCAGAAACCAATATTAAATTGGCCTTCTGGATCAATGTGTATAATTCTCTTGTCATGCATGCATATCTAGCATATGGCATTCCAAACAGTTCTCTGAGAAGAATGGCTCTATTTCACAAGGCTGCCTACAATATTGGAGGCCATGCAGTCACGGCCAATTCCATCGAACACGCTCTACTATGCTGCAGATCTCCACGGATTGGTCGTTGGTTTGAATCCATACTGTCGACGGCGATGCGGAAGAAATGCGCAGATGAGAAGCAACTCGTCCAGCTCAAATTCGGCCTGCCGGACTGCCAGCCTCTCGCCCTGTTCGCTCTGTGCACAGGAGCTTCATCTGATCCCATGCTGAAGGTGTACACGGCGAAGAACATCAGTGAGGAGCTGGAGCGTGCGAAGCGGGAGTTCCTGCAGGCGAGCGTGGTGGTGAGGAAGTCCAAGAAGGTGTTCCTGCCGCGCCTCGTCGAGCGGTACGCCCGGGAGGCCGGCCTCGCCGGCGCCGACGAGCTCCTCGCGTGGGCGCGCGACAACGCCGACGCCCGCGCCACCCAGGACGCCATCCAGCGGCTGTGCGTCGACGCCGGCGGCGGCCGGAGGAAGGCAGCGCAGGCCGTCGAGTGGCTCCCCTACAACGCCAGGTTCCGCTACGCCTTCCCCCGGACCATGGTCGACAAGCCACTCTTCTGAGCAAGAAACAAGCGTACATTCTGATGCTCCAATGTTTCGCGCTGCATTGTTGTTTTGTGATCTTGAGATGAAGAATTGA ]
[+] EMBL D43408 [ aatGCATGAATCGTTTCTCAAGTGAAACANTTGGATATTCACCCTGCAACCTTCCCACCAGATCCAAGGAAGCTTCCTTATTCAGGAAGTAGTTCTTTGACTCGGACCCTGAAAGATCACCTCTACCAATGTCCAAGCAAAATATCCGAAGAAATGGTTAGATGCATGGCCTCCATATACTGTCTTCTTCGCACCGAGTGTCCCGAAAACCCTGNAAAGGTCCGTTCACCCATTCTTGTTCGNGGgtc ]
[+] EMBL BI805026 [ GTCGAGCGGTACGCCCGGGA GCCGGCCTCGCCGGCGCCGACGAGCTCCTCGCGTGGGCGCGCGACAACGCCGACGCCCGCGCCACCCAGGACGCCATCCAGCGGCTGTGCGTCGACGCCGGCGGCGGCCGGAGGAAGGCAGCGCAGGCCGTCGAGTGGCTCCCCTACAACGCCAGGTTCCGCTACGCCTTCCCCCGGACCATGGTCGACAAGCCACTCTTCTGAGC AGAAACCAGCGTACATTCTGATGCTCC ATGTTTCGCGCTGCATTGTTGTTTTGTGATCTTGAGATGAAGAATTGAAGATGAGATGAGATCAGTGACAAGTTCAGAAGTGCTACATCTATTTTTGCTGTGCCGTGTACAGAATTGGATTGTTGCTAATATCTAGTAGCCATGGATTCCTTGAAAAAAAAAA]
consensusID : consensus_6312#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence
[CATCTGAGAAGAAAATCAACCTTTTTACAAGCATTTAGCAAAATCCTCAAAACGACTATCATATTTATTTCTGTGTATGTCATGCTGCCAATTTTTAACCTAGTCTTTTATATGCCCTTTTGAGGAATCATAGGTGCTAGTCAATCATCAGCCGAAAATCTATTTTAGGGTGCATATTTCATGTTCATTGTGTTTGATTCAGAAACATGCCACAGTGATGCTTTATTCCCCAGATTTATACCTTGAGCCTGTTGGTTTTAATTCAGAAGATGTTCTAAAAGCAGAAAATCACATATTGGACTTATCTTGACTATTGTTTTGCCTTTTCTTCCTTAAAAAAAGCTTCCTTATTCAGGAAGTAGTTCTTTGACTCGGACCCTGAAAGATCACCTCTACCAATGTCCAAGCAAAATATCCGAAGAAATGGTTAGATGCATGGCCTCCATATACTGTCTTCTTCGCACCGAGTGTCCCGAAAACCCTGAAAAGGTCCGT]
[+] EMBL CF324680 [CATCTGAGAAGAAAATCAACCTTTTTACAAGCATTTAGCAAAATCCTCAAAACGACTATCATATTTATTTCTGTGTATGTCATGCTGCCAATTTTTAACCTAGTCTTTTATATGCCCTTTTGAGGAATCATAGGTGCTAGTCAATCATCAGCCGAAAATCTATTTTAGGGTGCATATTTCATGTTCATTGTGTTTGATTCAGAAACATGCCACAGTGATGCTTTATTCCCCAGATTTATACCTTGAGCCTGTTGGTTTTAATTCAGAAGATGTTCTAAAAGCAGAAAATCACATATTGGACTTATCTTGACTATTGTTTTGCCTTTTCTTCCTTAAAAAAAGCTTCCTTATTCAGGAAGTAGTTCTTTGACTCGGACCCTGAAAGATCACCTCTACCAATGTCCAAGCAAAATATCCGAAGAAATGGTTAGATGCATGGCCTCCATATACTGTCTTCTTCGCACCGAGTGTCCCGAAAACCCTGAAAAGGTCCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6312#0 CGCCGCCGTCTCGCGCAGCTGCCAGGCCACCACTGTGCGCGCGATGCTCTTTGCCCCCCG 60
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 CGAAGACGAGCAGCGGCAGCAGCTTCCATGCTTGGCGATTCGATGCCATGTAGGAAGACG 120
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 AAGATGATGAAGCTAGCGTAGCCTAGTGATGGCTCAACCCGCCATGGAAGGGACGGTGCA 180
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 GGGTGGAGGAGGAGGAGGAGGAGGAGCACAAGAACCTCGCGGACAGTACGGCGGAGGCGG 240
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 CAAGAACGGCGGCGACGCCTCCCCGCGCAAGCATGCCGCTGCCGCTGCCGCTGCCGCCTT 300
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 GCCGCGACACCGGCGATCCAAGAGTGCTTCTTCCGATCGGAGCCTGGAGCCATGCAAGCA 360
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 CGCGGCGTTGCACGATCAGCGCTGCACCCAAGCAGCACAGGCGACGCCGAGCTCTCATCA 420
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 CCAACCGGACGCGACGACGAGGAAATCCCACGCCGCCGCCGCCGCCGCCGCCGAGGGCTC 480
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 CTCCATCCACCATGTACTGACGAGAGATCGCAGCAGGGCGAGCGCGTCGCCGAGCCATCG 540
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 CGTCTCGCTGGAGAATGATATCAGGCAGCTGCAGCTTAACCTGCATCAGGAGAGGTCGAT 600
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 CCGGATCATGCTTGACCGGGCGATTGGCCGCGCATCCAGCACTCTGTCTCCTGGCCACAT 660
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 GCATTTCCCAGCTCAGACAAAGGAACTGATTGCAGAGATTGAATTGCTTGAAGAGGAAAT 720
consensus_6312#1 --------------------------------------------CATCTGAGAAGAAAAT 16
*** ** ****
consensus_6312#0 CGCAAACCGTGAGCAGCATGTTCTTACCCTCTACAGAAGCATCTTCGATCAATCTGCGTC 780
consensus_6312#1 CA-ACCTTTTTACAAGCATTTAGCAAAATCCTCAAAACGACTATCATATTTATTTCTGTG 75
* * * * ***** * * ** * * * * * ** ** * **
consensus_6312#0 TGGAGCATCCTCAGGGCAGAGTTCTGGTCT--TTCTTCCCCAGCGCATACCAAGAGTATC 838
consensus_6312#1 TATGTCATGCT----GCCAATTTTTAACCTAGTCTTTTATATGCCCTTTTGAGGAATCAT 131
* *** ** ** * ** * ** * ** ** * * * ** *
consensus_6312#0 AGCTCTAGAACAAGACGGCATCCGAGCAT--AATATCGAGTGCATTTTGCTCATCTAAGA 896
consensus_6312#1 AGGTGCTAGTCAAT-CATCAGCCGAAAATCTATTTTAGGGTGCATATTTCATGTTCATTG 190
** * *** * ** **** ** * * * * ****** ** * * *
consensus_6312#0 AGCTCCCGCTCCAACCTTTCCA-AATCATGACATCGGTATCGGAGTCGGG----GAGATC 951
consensus_6312#1 TGTTTGATTCAGAAACATGCCACAGTGATGCTTTATTCCCCAGATTTATACCTTGAGCCT 250
* * ** * * *** * * *** * * ** * ***
consensus_6312#0 GAAGAGTATGCTGAAAACCAAGATTAAGCATGAATCTTTCTCAAGTGAAACATTGGATAT 1011
consensus_6312#1 GTTGGTTTTAATTCAGAAGATGTTCTAAAAGCAGAAAATCACATATTGGACTTATCTTGA 310
* * * * * * * * * * * * * ** ** * ** * *
consensus_6312#0 TCACCCTGCAACCTTCCCACCAGATCCAAGGAAGCTTCCTTATTCAGGAAGTAGTTCTTT 1071
consensus_6312#1 CTATTGTTTTGCCTTTTCTTC--CTTAAAAAAAGCTTCCTTATTCAGGAAGTAGTTCTTT 368
* * **** * * * ** *****************************
consensus_6312#0 GACTCGGACCCTGAAAGATCACCTCTACCAATGTCCAAGCAAAATATCCGAAGAAATGGT 1131
consensus_6312#1 GACTCGGACCCTGAAAGATCACCTCTACCAATGTCCAAGCAAAATATCCGAAGAAATGGT 428
************************************************************
consensus_6312#0 TAGATGCATGGCCTCCATATACTGTCTTCTTCGCACCGAGTGTCCCGAAAACCCTGAAAA 1191
consensus_6312#1 TAGATGCATGGCCTCCATATACTGTCTTCTTCGCACCGAGTGTCCCGAAAACCCTGAAAA 488
************************************************************
consensus_6312#0 GGTCCGTTCACCATTCTTGTCGAGGTCATCAACAAATGTCATTATTCCTCGGAGAGGAAA 1251
consensus_6312#1 GGTCCGT----------------------------------------------------- 495
*******
consensus_6312#0 CGGAGAGGACACTAATTTGTCAAACACCAAATGTACGGTGGAAGTATCTTCAATATCAGC 1311
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 TGATAAGAATCACATGCCAGATGTCTCTTATGCAATTACGCACTACAGGTTGCTTGTGGA 1371
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 GCAGCTTGAAAGGGTTGATCTGAGTATGTCAGAAACCAATATTAAATTGGCCTTCTGGAT 1431
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 CAATGTGTATAATTCTCTTGTCATGCATGCATATCTAGCATATGGCATTCCAAACAGTTC 1491
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 TCTGAGAAGAATGGCTCTATTTCACAAGGCTGCCTACAATATTGGAGGCCATGCAGTCAC 1551
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 GGCCAATTCCATCGAACACGCTCTACTATGCTGCAGATCTCCACGGATTGGTCGTTGGTT 1611
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 TGAATCCATACTGTCGACGGCGATGCGGAAGAAATGCGCAGATGAGAAGCAACTCGTCCA 1671
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 GCTCAAATTCGGCCTGCCGGACTGCCAGCCTCTCGCCCTGTTCGCTCTGTGCACAGGAGC 1731
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 TTCATCTGATCCCATGCTGAAGGTGTACACGGCGAAGAACATCAGTGAGGAGCTGGAGCG 1791
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 TGCGAAGCGGGAGTTCCTGCAGGCGAGCGTGGTGGTGAGGAAGTCCAAGAAGGTGTTCCT 1851
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 GCCGCGCCTCGTCGAGCGGTACGCCCGGGAGGCCGGCCTCGCCGGCGCCGACGAGCTCCT 1911
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 CGCGTGGGCGCGCGACAACGCCGACGCCCGCGCCACCCAGGACGCCATCCAGCGGCTGTG 1971
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 CGTCGACGCCGGCGGCGGCCGGAGGAAGGCAGCGCAGGCCGTCGAGTGGCTCCCCTACAA 2031
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 CGCCAGGTTCCGCTACGCCTTCCCCCGGACCATGGTCGACAAGCCACTCTTCTGAGCAAG 2091
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 AAACAAGCGTACATTCTGATGCTCCAATGTTTCGCGCTGCATTGTTGTTTTGTGATCTTG 2151
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 AGATGAAGAATTGAAGATGAGATGAGATCAGTGACAAGTTCAGAAGTGCTACATCTATTT 2211
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 TTGCTGTGCCGTGTACAGAATTGGATTGTTGCTAATATCTAGTAGCCATGGATTCCTTGA 2271
consensus_6312#1 ------------------------------------------------------------
consensus_6312#0 AAAAAAAAA 2280
consensus_6312#1 ---------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||