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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6319#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1839 fasta sequence
[TTACCGATCCGATCCGATTCGCCGGCGTCGGCGGCGGCGGCGGCGAGATGGATTTGCCGGCGAGCCGCGGGCGGTGGCGGAAGCGGAGCGCCCGGTCGCACGCGCCCCTCCTCGTGGCCGTCCTCGTGCTCCTCATCCCGGCCTCCCTCCTCCTCTCCTCGGCCTACTCCTCGCTGCTCCGCTCCATCCTCCCCTTCTCCGGCTTCGGAGGCGGTGGCGGAGGAGGGGGCAGAAGATGTGGGCGGTCGCCGGAGCTGGAAGGGGAGAGGTTTCTTTGGTACGCGCCGCACAGCGGGTTCAGCAACCAGGTGGGCGAGCTCCGGAATGCCGCCGTCGCCGCCGCGCTGCTCAACCGCACCCTCGTCGTGCCCCCGGTGCTCGACCACCACGCCGTCGTCCTCGGGAGCTGCCCCAAGTTCAGGGTCGCCGACGCTTCCGACCTCCGCGCCGCCGTCTGGGACCACTCCATGCAGCTCCTCCGGGAGCGGAGGTATGTATCCATGGGTGACATAATTGATCTATCGCCGATAAAGGCTACGGTTAGAACGATTGATTTCAGGGTGTTTGTCTCATTGTGGTGCGGCGTAGACATGCGCAAGACTTGCTTCTCTGGCTTGTGCTGTGCTGTCTCTGGTGGTGGATCGCTGCCAGGTGATTACGATAGATGCCGATCGATGCTGTCCGGTTTAGGGGGCAGCGAAAATGGCTGTGTGTATCCTGTCCAGGACGATTGCCGAACAACAGTCTGGACATATCAAGAGAATAATGATGGGGCGCTTGATTCATTTCAACCAGATGAAGACTTGAAAAAGAGGAAAAAGATATCATACGTTAGGAGGCGCAAAGATATGTACAAGGCTTTGGGGCCTGGTTCTGAAGCTGAGGATGCTTCCTTGTTGGCATTTGGGACACTTTTCTCAGGACCATACAAGGGATCAGAGTCATATTTTGATATCCACGAATCGCCAAAGGATCGTCGGCTACAGACTATACTTGAGAAGGTTGAGTTCCTCCCTTTTGCCCCTGAGATCATTGCTACAGGGAAGGAGTTCGCTAGGAAAAAGATCAAGGAGCCATTTCTTTGCGCACAGCTAAGGCTGTTAGATGGGCAATTCAAAAATCACTGGAAAGCTACATTTTCTGCACTCAAGGAGAAGTTAAAGGCTGTTGCGTTGGAAATGAAGAAAACCCAGGGTAGTGGTCCTATTCACATGTTCATGATGACTGATCTTCCACCAGCAAACTGGTCAAAGACCTATCTTGCAGATATTGCAAAAGATGGGAGATATAAATTGCACACCCTGAAGGAAAGTGATGAACTGGTGGCACAGACCGCAGAGCGGCTTATGGCTGCTGAACATGGTGTGAGATCTGGATTTATTCCCAAAAACATAGCAAACACGAGGAAGGATTGTGATCCAGTTCAACTACCAGAAATTTTGTTATATGTTGAAGAATCTGTCTGTAGCTGTGCATCACTAGGATTTGTGGGGACTGCTGGATCAACCATAGCAGGAAGCATAGAAACAATGAGGAAGAACAATGTCTGCCAATTGTAGGAGAACTGCACACATCCTTCGAGCAAACTGCCTGAAAAAACTAACCACCGTTACTTGACTC-GTCGACTGTAGATAGCAATATGAGAG-CCGTTACACAACAGAAGCTGAA-TCCTTGAGATC-TTCCATCCCCAGTG-CATGCATGACTGCATGAG-TATATAATGCTGAAAGCCCACGTTTTTTTTGTTTTTTTTATTTGAGTA-GAAAGGTATAACGTGTG-CCTTAATCATTCAGTTTTGTAAGTTTGGATACATTTATTTATTTTTTGGTATGTAATGTATCC]
[+] EMBL AK066634 [TTACCGATCCGATCCGATTCGCCGGCGTCGGCGGCGGCGGCGGCGAGATGGATTTGCCGGCGAGCCGCGGGCGGTGGCGGAAGCGGAGCGCCCGGTCGCACGCGCCCCTCCTCGTGGCCGTCCTCGTGCTCCTCATCCCGGCCTCCCTCCTCCTCTCCTCGGCCTACTCCTCGCTGCTCCGCTCCATCCTCCCCTTCTCCGGCTTCGGAGGCGGTGGCGGAGGAGGGGGCAGAAGATGTGGGCGGTCGCCGGAGCTGGAAGGGGAGAGGTTTCTTTGGTACGCGCCGCACAGCGGGTTCAGCAACCAGGTGGGCGAGCTCCGGAATGCCGCCGTCGCCGCCGCGCTGCTCAACCGCACCCTCGTCGTGCCCCCGGTGCTCGACCACCACGCCGTCGTCCTCGGGAGCTGCCCCAAGTTCAGGGTCGCCGACGCTTCCGACCTCCGCGCCGCCGTCTGGGACCACTCCATGCAGCTCCTCCGGGAGCGGAGGTATGTATCCATGGGTGACATAATTGATCTATCGCCGATAAAGGCTACGGTTAGAACGATTGATTTCAGGGTGTTTGTCTCATTGTGGTGCGGCGTAGACATGCGCAAGACTTGCTTCTCTGGCTTGTGCTGTGCTGTCTCTGGTGGTGGATCGCTGCCAGGTGATTACGATAGATGCCGATCGATGCTGTCCGGTTTAGGGGGCAGCGAAAATGGCTGTGTGTATCCTGTCCAGGACGATTGCCGAACAACAGTCTGGACATATCAAGAGAATAATGATGGGGCGCTTGATTCATTTCAACCAGATGAAGACTTGAAAAAGAGGAAAAAGATATCATACGTTAGGAGGCGCAAAGATATGTACAAGGCTTTGGGGCCTGGTTCTGAAGCTGAGGATGCTTCCTTGTTGGCATTTGGGACACTTTTCTCAGGACCATACAAGGGATCAGAGTCATATTTTGATATCCACGAATCGCCAAAGGATCGTCGGCTACAGACTATACTTGAGAAGGTTGAGTTCCTCCCTTTTGCCCCTGAGATCATTGCTACAGGGAAGGAGTTCGCTAGGAAAAAGATCAAGGAGCCATTTCTTTGCGCACAGCTAAGGCTGTTAGATGGGCAATTCAAAAATCACTGGAAAGCTACATTTTCTGCACTCAAGGAGAAGTTAAAGGCTGTTGCGTTGGAAATGAAGAAAACCCAGGGTAGTGGTCCTATTCACATGTTCATGATGACTGATCTTCCACCAGCAAACTGGTCAAAGACCTATCTTGCAGATATTGCAAAAGATGGGAGATATAAATTGCACACCCTGAAGGAAAGTGATGAACTGGTGGCACAGACCGCAGAGCGGCTTATGGCTGCTGAACATGGTGTGAGATCTGGATTTATTCCCAAAAACATAGCAAACACGAGGAAGGATTGTGATCCAGTTCAACTACCAGAAATTTTGTTATATGTTGAAGAATCTGTCTGTAGCTGTGCATCACTAGGATTTGTGGGGACTGCTGGATCAACCATAGCAGGAAGCATAGAAACAATGAGGAAGAACAATGTCTGCCAATTGTAGGAGAACTGCACACATCCTTCGAGCAAACTGCCTGAAAAAACTAACCACCGTTACTTGACTC GTCGACTGTAGATAGCAATATGAGAG CCGTTACACAACAGAAGCTGAA TCCTTGAGATC TTCCATCCCCAGTG CATGCATGACTGCATGAG TATATAATGCTGAAAGCCCACGTTTTTTTTGTTTTTTTTATTTGAGTA GAAAGGTATAACGTGTG CCTTAATCATTCAGTTTTGTAAGTTTGGATACATTTATTTATTTTTTGGTATGTAATGTATCC]
[+] EMBL CB641122 [ GGCGTCGGCGGCGGCGGCGGCGAGATGGATTTGCCGGCGAGCCGCGGGCGGTGGCGGAAGCGGAGCGCCCGGTCGCACGCGCCCCTCCTCGTGGCCGTCCTCGTGCTCCTCATCCCGGCCTCCCTCCTCCTCTCCTCGGCCTACTCCTCGCTGCTCCGCTCCATCCTCCCCTTCTCCGGCTTCGGAGGCGGTGGCGGAGGAGGGGGCAGAAGATGTGGGCGGTCGCCGGAGCTGGAAGGGGAGAGGTTTCTTTGGTACGCGCCGCACAGCGGGTTCAGCAACCAGGTGGGCGAGCTCCGGAATGCCGCCGTCGCCGCCGCGCTGCTCAACCGCACCCTCGTCGTGCCCCCGGTGCTCGACCACCACGCCGTCGTCCTCGGGAGCTGCCCCAAGTTCAAGGTCGCCGACGCTTCCGACCTCCGCGCCGCCGTCTGGGACCACTCCATGCAGCTCCTCCGGGAGCGGAGGTATGTATCCATGGGTGACATAATTGATCTATCGCCGATAAAGGCTACGGTTAGAACGATTGATTTCAGGGTGTTTGTCTCATTGTGGTGCGGCGTA ]
[+] EMBL CA766380 [ ATATTTTGATATCCACGAATCGCCAAAGGATCGTCAGCTACAGACTATACTTGAGAAGGTTGAGTTCCTCCCTTTTGCCCCTGAGATCATTGCTACAGGGAAGGAGTTCGCTAGGAAAAAGATCAAGGAGCCATTTCTTTGCGCACAGCTAAGGCTGTTAGATGGGCAATTCAAAAATCACTGGAAAGCTACATTTTCTGCACTCAAGGAGAAGTTAAAGGCTGNTGCGTTGGAAATGAANAAAACCCAGGGTAGTGGTCCTATTCACATGTTCATGATGACTGATCTTCCACCAGCAAACTGGTCAAAGACCTATCTTGCAGATATTGCAAAAGATGGGAGATATAAATTGCACACCCTGAAGGAAAGTGATGAACTGGTGGCACAGACCGCAGAGCGGCTTATGGCTGCTGAACATGGTGTGAGATCTGGATTTATTCCCAAAAACATAGCAAACACGAGGAAGGATTGTGATCCAGTTCAACTACCAGAAATTTTGTTATATGTTGAAGAATCTGTCTGTAGCTGTGCATCACTAGGATTTGTGGGGACTGCTGGATCAACCATAGCAGGAAGCATAGAAACAATGAGGAAGAACAATGTCTGNCAATTGTAGGAGAACTGCACACATCCTTCGAGCAAACTGGCTGNAAAAACTAACCACCGGTACTTGACTCGGTCGACTGTAGATAGCAATATGAAAGCCCGTTNCACAACANAAGCTGAATTCCTTGAGATCNTTCATTCCCCAGNGCCATGCATGACTGCATGAGNNTTTTAATGCTGNAAGNCCCCGNTTTTTTTG TTTTTTTNTTTGGGTANAAAAGGGATAACGGGGGNCCTT ]
consensusID : consensus_6319#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence
[CCGATTCGCCGGCGTCGGCGGCGGCGGCGGCGAGATGGATTTGCCGGCGAGCCGCGGGCGGTGGCGGAAGCGGACNNCCGGTCGCACGCGCCCCTCCTCGTGGCCGTCCTCGTGCTCCTCATCCCGGCCTCCCTCCTCCTCTCCTCGGCCTACTCCTCGCTGCTCCGCTCCATCCTCCCCTTCTCCGGCTTCGGAGGCGGTGGCGGAGGAGGGGGCAGAAGATGTGGGCGGTCGCCGGAGCTGGAAGGGGAGAGGTTTCTTTGGTACGCGCCGCACAGCGGGTTCAGCAACCAGGTGGGCGAGCTCCGGAATGACCGCCGTCGCCGCCGCGCTGCTCAACCGAACCCTCGTCGTAACCTGGTGCTGAACAACAAGGCGTCGTCTTGGGAGCTGGCCTAAGTTAAGGGTCGCGANGGTTTCGAACTTCGTGTGTNTTTGGGANAATTATGAAGTTTTNTGGGAGGG]
[+] EMBL OS0581A [CCGATTCGCCGGCGTCGGCGGCGGCGGCGGCGAGATGGATTTGCCGGCGAGCCGCGGGCGGTGGCGGAAGCGGACNNCCGGTCGCACGCGCCCCTCCTCGTGGCCGTCCTCGTGCTCCTCATCCCGGCCTCCCTCCTCCTCTCCTCGGCCTACTCCTCGCTGCTCCGCTCCATCCTCCCCTTCTCCGGCTTCGGAGGCGGTGGCGGAGGAGGGGGCAGAAGATGTGGGCGGTCGCCGGAGCTGGAAGGGGAGAGGTTTCTTTGGTACGCGCCGCACAGCGGGTTCAGCAACCAGGTGGGCGAGCTCCGGAATGACCGCCGTCGCCGCCGCGCTGCTCAACCGAACCCTCGTCGTAACCTGGTGCTGAACAACAAGGCGTCGTCTTGGGAGCTGGCCTAAGTTAAGGGTCGCGANGGTTTCGAACTTCGTGTGTNTTTGGGANAATTATGAAGTTTTNTGGGAGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6319#0 TTACCGATCCGATCCGATTCGCCGGCGTCGGCGGCGGCGGCGGCGAGATGGATTTGCCGG 60
consensus_6319#1 -------------CCGATTCGCCGGCGTCGGCGGCGGCGGCGGCGAGATGGATTTGCCGG 47
***********************************************
consensus_6319#0 CGAGCCGCGGGCGGTGGCGGAAGCGGAGCGCCCGGTCGCACGCGCCCCTCCTCGTGGCCG 120
consensus_6319#1 CGAGCCGCGGGCGGTGGCGGAAGCGGA-CNNCCGGTCGCACGCGCCCCTCCTCGTGGCCG 106
*************************** * *****************************
consensus_6319#0 TCCTCGTGCTCCTCATCCCGGCCTCCCTCCTCCTCTCCTCGGCCTACTCCTCGCTGCTCC 180
consensus_6319#1 TCCTCGTGCTCCTCATCCCGGCCTCCCTCCTCCTCTCCTCGGCCTACTCCTCGCTGCTCC 166
************************************************************
consensus_6319#0 GCTCCATCCTCCCCTTCTCCGGCTTCGGAGGCGGTGGCGGAGGAGGGGGCAGAAGATGTG 240
consensus_6319#1 GCTCCATCCTCCCCTTCTCCGGCTTCGGAGGCGGTGGCGGAGGAGGGGGCAGAAGATGTG 226
************************************************************
consensus_6319#0 GGCGGTCGCCGGAGCTGGAAGGGGAGAGGTTTCTTTGGTACGCGCCGCACAGCGGGTTCA 300
consensus_6319#1 GGCGGTCGCCGGAGCTGGAAGGGGAGAGGTTTCTTTGGTACGCGCCGCACAGCGGGTTCA 286
************************************************************
consensus_6319#0 GCAACCAGGTGGGCGAGCTCCGGAATG-CCGCCGTCGCCGCCGCGCTGCTCAACCGCACC 359
consensus_6319#1 GCAACCAGGTGGGCGAGCTCCGGAATGACCGCCGTCGCCGCCGCGCTGCTCAACCGAACC 346
*************************** **************************** ***
consensus_6319#0 CTCGTCGTGCCCCCGGTGCTCGACCACCACGCCGTCGTCCTCGGGAGCTGCCCCAAGTTC 419
consensus_6319#1 CTCGTCGTAACCT-GGTGCT-GAACAACAAGGCGTCGTC-TTGGGAGCTGGCCTAAGTTA 403
******** ** ****** ** ** ** * ******* * ******** ** *****
consensus_6319#0 AGGGTCGCCGACGCTTCCGACCTCCGCGCCGCCGTCTGGGACCACTCCATGCAGCTCCTC 479
consensus_6319#1 AGGGTCGC-GANGGTTTCGAACTTCGTGTG--TNTTTGGGANAATT--ATGAAGTTT-TN 457
******** ** * ** *** ** ** * * ***** * * *** ** * *
consensus_6319#0 CGGGAGCGGAGGTATGTATCCATGGGTGACATAATTGATCTATCGCCGATAAAGGCTACG 539
consensus_6319#1 TGGGAGGG---------------------------------------------------- 465
***** *
consensus_6319#0 GTTAGAACGATTGATTTCAGGGTGTTTGTCTCATTGTGGTGCGGCGTAGACATGCGCAAG 599
consensus_6319#1 ------------------------------------------------------------
consensus_6319#0 ACTTGCTTCTCTGGCTTGTGCTGTGCTGTCTCTGGTGGTGGATCGCTGCCAGGTGATTAC 659
consensus_6319#1 ------------------------------------------------------------
consensus_6319#0 GATAGATGCCGATCGATGCTGTCCGGTTTAGGGGGCAGCGAAAATGGCTGTGTGTATCCT 719
consensus_6319#1 ------------------------------------------------------------
consensus_6319#0 GTCCAGGACGATTGCCGAACAACAGTCTGGACATATCAAGAGAATAATGATGGGGCGCTT 779
consensus_6319#1 ------------------------------------------------------------
consensus_6319#0 GATTCATTTCAACCAGATGAAGACTTGAAAAAGAGGAAAAAGATATCATACGTTAGGAGG 839
consensus_6319#1 ------------------------------------------------------------
consensus_6319#0 CGCAAAGATATGTACAAGGCTTTGGGGCCTGGTTCTGAAGCTGAGGATGCTTCCTTGTTG 899
consensus_6319#1 ------------------------------------------------------------
consensus_6319#0 GCATTTGGGACACTTTTCTCAGGACCATACAAGGGATCAGAGTCATATTTTGATATCCAC 959
consensus_6319#1 ------------------------------------------------------------
consensus_6319#0 GAATCGCCAAAGGATCGTCGGCTACAGACTATACTTGAGAAGGTTGAGTTCCTCCCTTTT 1019
consensus_6319#1 ------------------------------------------------------------
consensus_6319#0 GCCCCTGAGATCATTGCTACAGGGAAGGAGTTCGCTAGGAAAAAGATCAAGGAGCCATTT 1079
consensus_6319#1 ------------------------------------------------------------
consensus_6319#0 CTTTGCGCACAGCTAAGGCTGTTAGATGGGCAATTCAAAAATCACTGGAAAGCTACATTT 1139
consensus_6319#1 ------------------------------------------------------------
consensus_6319#0 TCTGCACTCAAGGAGAAGTTAAAGGCTGTTGCGTTGGAAATGAAGAAAACCCAGGGTAGT 1199
consensus_6319#1 ------------------------------------------------------------
consensus_6319#0 GGTCCTATTCACATGTTCATGATGACTGATCTTCCACCAGCAAACTGGTCAAAGACCTAT 1259
consensus_6319#1 ------------------------------------------------------------
consensus_6319#0 CTTGCAGATATTGCAAAAGATGGGAGATATAAATTGCACACCCTGAAGGAAAGTGATGAA 1319
consensus_6319#1 ------------------------------------------------------------
consensus_6319#0 CTGGTGGCACAGACCGCAGAGCGGCTTATGGCTGCTGAACATGGTGTGAGATCTGGATTT 1379
consensus_6319#1 ------------------------------------------------------------
consensus_6319#0 ATTCCCAAAAACATAGCAAACACGAGGAAGGATTGTGATCCAGTTCAACTACCAGAAATT 1439
consensus_6319#1 ------------------------------------------------------------
consensus_6319#0 TTGTTATATGTTGAAGAATCTGTCTGTAGCTGTGCATCACTAGGATTTGTGGGGACTGCT 1499
consensus_6319#1 ------------------------------------------------------------
consensus_6319#0 GGATCAACCATAGCAGGAAGCATAGAAACAATGAGGAAGAACAATGTCTGCCAATTGTAG 1559
consensus_6319#1 ------------------------------------------------------------
consensus_6319#0 GAGAACTGCACACATCCTTCGAGCAAACTGCCTGAAAAAACTAACCACCGTTACTTGACT 1619
consensus_6319#1 ------------------------------------------------------------
consensus_6319#0 CGTCGACTGTAGATAGCAATATGAGAGCCGTTACACAACAGAAGCTGAATCCTTGAGATC 1679
consensus_6319#1 ------------------------------------------------------------
consensus_6319#0 TTCCATCCCCAGTGCATGCATGACTGCATGAGTATATAATGCTGAAAGCCCACGTTTTTT 1739
consensus_6319#1 ------------------------------------------------------------
consensus_6319#0 TTGTTTTTTTTATTTGAGTAGAAAGGTATAACGTGTGCCTTAATCATTCAGTTTTGTAAG 1799
consensus_6319#1 ------------------------------------------------------------
consensus_6319#0 TTTGGATACATTTATTTATTTTTTGGTATGTAATGTATCC 1839
consensus_6319#1 ----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||