cluster # 6320

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Oryza sativa
cluster # 6320 cluster # 6320 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6320#0 length = 1248 sequences # 2

consensus_6320#1 length = 311 sequences # 1
consensus_6320#2 length = 251 sequences # 1

consensusID : consensus_6320#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1248
fasta sequence

                              [TCTTCTCCTCCACCTCCAAGTACTCCGCATCCATCCATGGCCACCACCGCCCTCTGATCCGATCGATACTGATCAGCCAGTAGCTATGCTGGGTTCGGACCAGCTCGAGCACCGCCCGGCGCCGTCGGCTCCCCGCGCCGAGCCGGACGATGTCGCCGACGACGTGGAGGTGGAGGCGTTCCGGGACATCCACCCGGAGCCGTCGCCTCCGCATCTACCGCCGCCGCCGCTCAGGCAGCCGTCGTGGGACGCCGCGAGCCACCGCTCGCTGTCGTCCTCCGGCGCGGGCGGCGGCGGCGACGTCGAGCTGTTCGCCACCATGAGCCGCGAGTTCACCGCCATGGTGGCGGCCGGGTCGTCGTCCGCGCCCAGCCCCGACGTTCCCGGCGACGCCCCCGCCGCCGCCGACCTGAACCTGCTGCAGCTGGCGCGCATCGGCGAGAACGAGCCGGCGGCCGAGGCGAACGCGCTCGCCATCGTGCCGGCGGCGGCGGGCAGCGGCCCGCCGGCGCCGGTGGAGCAGGTGAAGAAGGAGGAGGTGGAGGCGAAGGTGGCGGCGTGGCAGGCGGAGGAGGTGGCCAAGATCAACAACAAGTTCAAGCGCGAGGAGGTCGTCATCAATGGCTGGGAGAGCCAGCAAGTCGACAAGGCCACCGCCTGGCTCGCCAAGATCGAGAGGAAGCTGGAGGAGGAGCGGGCGAAGGCGACGGAGAAGGCTCGCAACGAGGCGGCGGCGGCGCGGCGGAAGGCGGAGGAGCGGCGGGCGTCGGCGGAGGCGCGGCGCGGGAGGAAGACGGCAGAGGTGCTCGACCGTGCCAACTTCTGCAAGGCCGCCGGCAGGGTGCCATCCAAGCGCTCCTTCTTCTCCTTCTAAAGTTCTAACCAAAGCTAGCTAGCCTTGCTCAATTATATCATCTCTAGCTAGCTAATTATGATTATTACTTGTTTTCTACTTAATTGATCAATCAATTTCACATCATCTTCTTCTTTGCATATGGTTGATCAAGTAGCTCTATTGCTTCTATATAATCATGATATATGTTGTATATATATGTGTTACTTAATTCTGTAGAAATGTGTGCTTAGTTTTGTATTGTAAACATTCAGAGTTCAGAGGAGTGTTCGCAAAGTAGTGATTTGTACTGACCTTATAGAACATAATGCTAATGCTTAATTACTTAGACTGTCCTACTGTATGTTTGTGCAGTTAAATCTGAAATGTTAGCCATTACAGACCTTAAAAAAAAA]

[+] EMBL AK067003             [TCTTCTCCTCCACCTCCAAGTACTCCGCATCCATCCATGGCCACCACCGCCCTCTGATCCGATCGATACTGATCAGCCAGTAGCTATGCTGGGTTCGGACCAGCTCGAGCACCGCCCGGCGCCGTCGGCTCCCCGCGCCGAGCCGGACGATGTCGCCGACGACGTGGAGGTGGAGGCGTTCCGGGACATCCACCCGGAGCCGTCGCCTCCGCATCTACCGCCGCCGCCGCTCAGGCAGCCGTCGTGGGACGCCGCGAGCCACCGCTCGCTGTCGTCCTCCGGCGCGGGCGGCGGCGGCGACGTCGAGCTGTTCGCCACCATGAGCCGCGAGTTCACCGCCATGGTGGCGGCCGGGTCGTCGTCCGCGCCCAGCCCCGACGTTCCCGGCGACGCCCCCGCCGCCGCCGACCTGAACCTGCTGCAGCTGGCGCGCATCGGCGAGAACGAGCCGGCGGCCGAGGCGAACGCGCTCGCCATCGTGCCGGCGGCGGCGGGCAGCGGCCCGCCGGCGCCGGTGGAGCAGGTGAAGAAGGAGGAGGTGGAGGCGAAGGTGGCGGCGTGGCAGGCGGAGGAGGTGGCCAAGATCAACAACAAGTTCAAGCGCGAGGAGGTCGTCATCAATGGCTGGGAGAGCCAGCAAGTCGACAAGGCCACCGCCTGGCTCGCCAAGATCGAGAGGAAGCTGGAGGAGGAGCGGGCGAAGGCGACGGAGAAGGCTCGCAACGAGGCGGCGGCGGCGCGGCGGAAGGCGGAGGAGCGGCGGGCGTCGGCGGAGGCGCGGCGCGGGAGGAAGACGGCAGAGGTGCTCGACCGTGCCAACTTCTGCAAGGCCGCCGGCAGGGTGCCATCCAAGCGCTCCTTCTTCTCCTTCTAAAGTTCTAACCAAAGCTAGCTAGCCTTGCTCAATTATATCATCTCTAGCTAGCTAATTATGATTATTACTTGTTTTCTACTTAATTGATC                                                                                                                                                                                                                                                                                             ]
[+] EMBL CF324895             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AGAGGTGCTCGACCGTGCCAACTTCTGCAAGGCCGCCGGCAGGGTGCCATCCAAGCGCTCCTTCTTCTCCTTCTAAAGTTCTAACCAAAGCTAGCTAGCCTTGCTCAATTATATCATCTCTAGCTAGCTAATTATGATTATTACTTGTTTTCTACTTAATTGATCAATCAATTTCACATCATCTTCTTCTTTGCATATGGTTGATCAAGTAGCTCTATTGCTTCTATATAATCATGATATATGTTGTATATATATGTGTTACTTAATTCTGTAGAAATGTGTGCTTAGTTTTGTATTGTAAACATTCAGAGTTCAGAGGAGTGTTCGCAAAGTAGTGATTTGTACTGACCTTATAGAACATAATGCTAATGCTTAATTACTTAGACTGTCCTACTGTATGTTTGTGCAGTTAAATCTGAAATGTTAGCCATTACAGACCTTAAAAAAAAA]




>consensus_6320#0
TCTTCTCCTCCACCTCCAAGTACTCCGCATCCATCCATGGCCACCACCGCCCTCTGATCC
GATCGATACTGATCAGCCAGTAGCTATGCTGGGTTCGGACCAGCTCGAGCACCGCCCGGC
GCCGTCGGCTCCCCGCGCCGAGCCGGACGATGTCGCCGACGACGTGGAGGTGGAGGCGTT
CCGGGACATCCACCCGGAGCCGTCGCCTCCGCATCTACCGCCGCCGCCGCTCAGGCAGCC
GTCGTGGGACGCCGCGAGCCACCGCTCGCTGTCGTCCTCCGGCGCGGGCGGCGGCGGCGA
CGTCGAGCTGTTCGCCACCATGAGCCGCGAGTTCACCGCCATGGTGGCGGCCGGGTCGTC
GTCCGCGCCCAGCCCCGACGTTCCCGGCGACGCCCCCGCCGCCGCCGACCTGAACCTGCT
GCAGCTGGCGCGCATCGGCGAGAACGAGCCGGCGGCCGAGGCGAACGCGCTCGCCATCGT
GCCGGCGGCGGCGGGCAGCGGCCCGCCGGCGCCGGTGGAGCAGGTGAAGAAGGAGGAGGT
GGAGGCGAAGGTGGCGGCGTGGCAGGCGGAGGAGGTGGCCAAGATCAACAACAAGTTCAA
GCGCGAGGAGGTCGTCATCAATGGCTGGGAGAGCCAGCAAGTCGACAAGGCCACCGCCTG
GCTCGCCAAGATCGAGAGGAAGCTGGAGGAGGAGCGGGCGAAGGCGACGGAGAAGGCTCG
CAACGAGGCGGCGGCGGCGCGGCGGAAGGCGGAGGAGCGGCGGGCGTCGGCGGAGGCGCG
GCGCGGGAGGAAGACGGCAGAGGTGCTCGACCGTGCCAACTTCTGCAAGGCCGCCGGCAG
GGTGCCATCCAAGCGCTCCTTCTTCTCCTTCTAAAGTTCTAACCAAAGCTAGCTAGCCTT
GCTCAATTATATCATCTCTAGCTAGCTAATTATGATTATTACTTGTTTTCTACTTAATTG
ATCAATCAATTTCACATCATCTTCTTCTTTGCATATGGTTGATCAAGTAGCTCTATTGCT
TCTATATAATCATGATATATGTTGTATATATATGTGTTACTTAATTCTGTAGAAATGTGT
GCTTAGTTTTGTATTGTAAACATTCAGAGTTCAGAGGAGTGTTCGCAAAGTAGTGATTTG
TACTGACCTTATAGAACATAATGCTAATGCTTAATTACTTAGACTGTCCTACTGTATGTT
TGTGCAGTTAAATCTGAAATGTTAGCCATTACAGACCTTAAAAAAAAA

consensusID : consensus_6320#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 311
fasta sequence

                              [CAAATTTTAATTGAATTTANTTAACTCTGTTTTTTCTAACTTAAAATTCGAGTCACATTCGACATTTTTCACCATTTCACTCGTTTCTTTCTCTTTGCATTATCTGGTTTGTACTCCATAGNTCACCNCCTTCTATTTGCTTTCTATGTACTAATTCACTGATATACTGTTGTATATATATGTGTTACTTAATTCTGTAGAAATGTGTGCTTAGTTTTGTATTGTAAACATTCAGAGTTCAGAGGAGTGTTCGCAAAGTAGTGATTTGTACTGACCTTANNGCNCATAATGCTAATGCCTTAATTGAAAAA]

[+] EMBL BQ906452             [CAAATTTTAATTGAATTTANTTAACTCTGTTTTTTCTAACTTAAAATTCGAGTCACATTCGACATTTTTCACCATTTCACTCGTTTCTTTCTCTTTGCATTATCTGGTTTGTACTCCATAGNTCACCNCCTTCTATTTGCTTTCTATGTACTAATTCACTGATATACTGTTGTATATATATGTGTTACTTAATTCTGTAGAAATGTGTGCTTAGTTTTGTATTGTAAACATTCAGAGTTCAGAGGAGTGTTCGCAAAGTAGTGATTTGTACTGACCTTANNGCNCATAATGCTAATGCCTTAATTGAAAAA]




>consensus_6320#1
CAAATTTTAATTGAATTTANTTAACTCTGTTTTTTCTAACTTAAAATTCGAGTCACATTC
GACATTTTTCACCATTTCACTCGTTTCTTTCTCTTTGCATTATCTGGTTTGTACTCCATA
GNTCACCNCCTTCTATTTGCTTTCTATGTACTAATTCACTGATATACTGTTGTATATATA
TGTGTTACTTAATTCTGTAGAAATGTGTGCTTAGTTTTGTATTGTAAACATTCAGAGTTC
AGAGGAGTGTTCGCAAAGTAGTGATTTGTACTGACCTTANNGCNCATAATGCTAATGCCT
TAATTGAAAAA

consensusID : consensus_6320#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 251
fasta sequence

                              [TAATTGATCAATCAATTTCCACCATCCATCCTTCTTCCTTTGCCATACTCGCTTTGATCAAGTAGCTCTATTGCTTCTATATAATCCATGATATATTTGTATATATATGTGTTACTTAATTCTGTAGAAATGTGTGCTTAGTTTTGTATTGTAAACCATTCCAGGAGTTCCCAGAGGAGTGTTCCCCAAAGTAGTGGATTTGTACTGACCCCTTATTAGAACCATAATGGCTAATGCTTAATTACTTAAAA]

[+] EMBL BM421520             [TAATTGATCAATCAATTTCCACCATCCATCCTTCTTCCTTTGCCATACTCGCTTTGATCAAGTAGCTCTATTGCTTCTATATAATCCATGATATATTTGTATATATATGTGTTACTTAATTCTGTAGAAATGTGTGCTTAGTTTTGTATTGTAAACCATTCCAGGAGTTCCCAGAGGAGTGTTCCCCAAAGTAGTGGATTTGTACTGACCCCTTATTAGAACCATAATGGCTAATGCTTAATTACTTAAAA]




>consensus_6320#2
TAATTGATCAATCAATTTCCACCATCCATCCTTCTTCCTTTGCCATACTCGCTTTGATCA
AGTAGCTCTATTGCTTCTATATAATCCATGATATATTTGTATATATATGTGTTACTTAAT
TCTGTAGAAATGTGTGCTTAGTTTTGTATTGTAAACCATTCCAGGAGTTCCCAGAGGAGT
GTTCCCCAAAGTAGTGGATTTGTACTGACCCCTTATTAGAACCATAATGGCTAATGCTTA
ATTACTTAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6320#0      TCTTCTCCTCCACCTCCAAGTACTCCGCATCCATCCATGGCCACCACCGCCCTCTGATCC 60
consensus_6320#2      ------------------------------------------------------------
consensus_6320#1      ------------------------------------------------------------
                                                                                  

consensus_6320#0      GATCGATACTGATCAGCCAGTAGCTATGCTGGGTTCGGACCAGCTCGAGCACCGCCCGGC 120
consensus_6320#2      ------------------------------------------------------------
consensus_6320#1      ------------------------------------------------------------
                                                                                  

consensus_6320#0      GCCGTCGGCTCCCCGCGCCGAGCCGGACGATGTCGCCGACGACGTGGAGGTGGAGGCGTT 180
consensus_6320#2      ------------------------------------------------------------
consensus_6320#1      ------------------------------------------------------------
                                                                                  

consensus_6320#0      CCGGGACATCCACCCGGAGCCGTCGCCTCCGCATCTACCGCCGCCGCCGCTCAGGCAGCC 240
consensus_6320#2      ------------------------------------------------------------
consensus_6320#1      ------------------------------------------------------------
                                                                                  

consensus_6320#0      GTCGTGGGACGCCGCGAGCCACCGCTCGCTGTCGTCCTCCGGCGCGGGCGGCGGCGGCGA 300
consensus_6320#2      ------------------------------------------------------------
consensus_6320#1      ------------------------------------------------------------
                                                                                  

consensus_6320#0      CGTCGAGCTGTTCGCCACCATGAGCCGCGAGTTCACCGCCATGGTGGCGGCCGGGTCGTC 360
consensus_6320#2      ------------------------------------------------------------
consensus_6320#1      ------------------------------------------------------------
                                                                                  

consensus_6320#0      GTCCGCGCCCAGCCCCGACGTTCCCGGCGACGCCCCCGCCGCCGCCGACCTGAACCTGCT 420
consensus_6320#2      ------------------------------------------------------------
consensus_6320#1      ------------------------------------------------------------
                                                                                  

consensus_6320#0      GCAGCTGGCGCGCATCGGCGAGAACGAGCCGGCGGCCGAGGCGAACGCGCTCGCCATCGT 480
consensus_6320#2      ------------------------------------------------------------
consensus_6320#1      ------------------------------------------------------------
                                                                                  

consensus_6320#0      GCCGGCGGCGGCGGGCAGCGGCCCGCCGGCGCCGGTGGAGCAGGTGAAGAAGGAGGAGGT 540
consensus_6320#2      ------------------------------------------------------------
consensus_6320#1      ------------------------------------------------------------
                                                                                  

consensus_6320#0      GGAGGCGAAGGTGGCGGCGTGGCAGGCGGAGGAGGTGGCCAAGATCAACAACAAGTTCAA 600
consensus_6320#2      ------------------------------------------------------------
consensus_6320#1      ------------------------------------------------------------
                                                                                  

consensus_6320#0      GCGCGAGGAGGTCGTCATCAATGGCTGGGAGAGCCAGCAAGTCGACAAGGCCACCGCCTG 660
consensus_6320#2      ------------------------------------------------------------
consensus_6320#1      ------------------------------------------------------------
                                                                                  

consensus_6320#0      GCTCGCCAAGATCGAGAGGAAGCTGGAGGAGGAGCGGGCGAAGGCGACGGAGAAGGCTCG 720
consensus_6320#2      ------------------------------------------------------------
consensus_6320#1      ------------------------------------------------------------
                                                                                  

consensus_6320#0      CAACGAGGCGGCGGCGGCGCGGCGGAAGGCGGAGGAGCGGCGGGCGTCGGCGGAGGCGCG 780
consensus_6320#2      ------------------------------------------------------------
consensus_6320#1      ------------------------------------------------------------
                                                                                  

consensus_6320#0      GCGCGGGAGGAAGACGGCAGAGGTGCTCGACCGTGCCAACTTCTGCAAGGCCGCCGGCAG 840
consensus_6320#2      ------------------------------------------------------------
consensus_6320#1      ------------------------------------------------------------
                                                                                  

consensus_6320#0      GGTGCCATCCAAGCGCTCCTTCTTCTCCTTCTAAAGTTCTAACCAAAGCTAGCTAGCCTT 900
consensus_6320#2      ------------------------------------------------------------
consensus_6320#1      --------------------------------CAAATTTTAATTGAATTTANTTAACTCT 28
                                                                                  

consensus_6320#0      GCTCAATTATATCATCTCTAGCTAGCTAATTATGATTATTACTTGTTTTCTACTTAATTG 960
consensus_6320#2      ------------------------------------------------------TAATTG 6
consensus_6320#1      GTT---TTTTCTAACTTAAAATTCG--AGTCACATTCGACATTTTTCACCATTTCACTCG 83
                                                                             * * *

consensus_6320#0      ATCAATCAATTTCACATCATC-----TTCTTCTTTGCATATGGT-----TGATCAAGTAG 1010
consensus_6320#2      ATCAATCAATTTC-CACCATCCATCCTTCTTCCTTTGCCATACTCGCTTTGATCAAGTAG 65
consensus_6320#1      TTTCTTTCTCTTTGCATTATC-----TGGTTTGTACTCCATAGNT--CACCNCCTTCTAT 136
                       *   *    **  **  ***     *  **  *     **            *   ** 

consensus_6320#0      CTCTATTGCTTCTATATAATC-ATGATATA-TGTTGTATATATATGTGTTACTTAATTCT 1068
consensus_6320#2      CTCTATTGCTTCTATATAATCCATGATATA-T-TTGTATATATATGTGTTACTTAATTCT 123
consensus_6320#1      TTGCTTTCTATGTACTAATTCACTGATATACTGTTGTATATATATGTGTTACTTAATTCT 196
                       *   **   * **   * **  ******* * ***************************

consensus_6320#0      GTAGAAATGTGTGCTTAGTTTTGTATTGTAAAC-ATTC--AGAGTTC--AGAGGAGTGTT 1123
consensus_6320#2      GTAGAAATGTGTGCTTAGTTTTGTATTGTAAACCATTCCAGGAGTTCCCAGAGGAGTGTT 183
consensus_6320#1      GTAGAAATGTGTGCTTAGTTTTGTATTGTAAAC-ATTC--AGAGTTC--AGAGGAGTGTT 251
                      ********************************* ****   ******  ***********

consensus_6320#0      CGC-AAAGTAGTG-ATTTGTACTGACC--TTAT-AGAAC-ATAATG-CTAATGC-TTAAT 1175
consensus_6320#2      CCCCAAAGTAGTGGATTTGTACTGACCCCTTATTAGAACCATAATGGCTAATGC-TTAAT 242
consensus_6320#1      CGC-AAAGTAGTG-ATTTGTACTGACC--TTAN-NGCNC-ATAATG-CTAATGCCTTAAT 304
                      * * ********* *************  ***   *  * ****** ******* *****

consensus_6320#0      TACTTAGACTGTCCTACTGTATGTTTGTGCAGTTAAATCTGAAATGTTAGCCATTACAGA 1235
consensus_6320#2      TACTTAAAA--------------------------------------------------- 251
consensus_6320#1      TGAAAAA----------------------------------------------------- 311
                      *    *                                                      

consensus_6320#0      CCTTAAAAAAAAA 1248
consensus_6320#2      -------------
consensus_6320#1      -------------