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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6322#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1699 fasta sequence
[AGGAGACCTCTCCTCTGTCTCTCCCCTCCTTTTTCCACTTTCCAAGACAACGCACCAACAAAAGCGTCGCCCCTCTTCCTCCTCCTCCTCCACCTCCATTGCTGCGCCCTCTCCCTCTCCCTCTCGCCTCCCTAGGCCACTCACTCCCCAAAACACCACCAACCTCCTTTCCTCTCTCTCTCTTCTTGAGTTCTTGAATCAATGCGTTCTTGAGTTCTTGAATCAATACCAGTATCACTTGTGCTAATAGTACTAGAGGAGGAGGTGTTGTTTCTTGCGATCTTGGGTTGATTGATATGGGTGTTCTTTGCTTCGGCGCTTCCAACATCCTCCTCTGCGCGGAGGACAGCAGCAGCGTGCTTGGCCTGGGCGGCTTTGGCGGCGGCGGCGGCGAGGTGGCGGCGGAGCTGGGGTGCGGCGGCGGTGGCGGCTTTGATTTCTTTGGC-TTCGGTGGTGGTGCTGTGTTCCCCATCGACTCCGATGAGTTCGTGGCGTTGTTGGTGGAGAAGGAGATGGATCATCAGCCTCAGCGGGGGTATCTGGAGAAGCTGGAGCTCGGTGGATTGGAGTGTTCTTGGAGGAAAGATGCCATTGATTGGATTTGCAAGGTCCATTCCTACTACAACTTTGGACCACTCAGCCTTTACCTCGCAGTGAACTACCTGGATAGGTTCCTCTCCTCGTTTAATCTCCCTCATGACGAATCTTGGATGCAACAGTTGCTGTCAGTTAGTTGTCTATCTCTTGCTACGAAGATGGAGGAGACCGTGGTCCCTCTTCCCATGGACCTTCAGGTTTTTGATGCGGAATATGTGTTTGAAGCAAGGCATATTAAGAGGATGGAGCTTATTGTGATGAAAACCCTGAAATGGAGGCTGCAAGCTGTGACCCCATTCTCTTTCATCGGCTACTTCCTGGACAAGTTCAATGAAGGGAAGCCGCCGAGCTACACGCTGGCATCATGGTGCTCTGATCTCACAGTGGGCACTCTGAAAGACTCTAGGTTCTTGTCATTCAGACCTTCTGAGATTGCGGCCGCAGTGGTGTTAGCTGTGCTTGCTGAGAATCAGTTTCTTGTCTTCAACAGTGCCCTTGGAGAATCTGAAATCCCTGTAAATAAGGAGATGGTTATGAGATGCTATGAGCTGATGGTAGAGAAGGCATTGGTGAAGAAGATAAGGAACAGCAATGCAAGCTCTTCAGTTCCACACAGCCCGATCACCGTGTTGGACGCGGCGTGCTTCAGTTTTAGGAGTGATGACACAACACTAGGATCATCACAGTCAAACAGCAACAACAAAGATTACAACAGCCAGGACTCTGCTCCTGCTTCCAAGAGGAGGAGATTAAACACAACACCAATCTGATAACTGTACATACATAACTTGGCATTGCTTTGCAATTGTTCATTCAGTGAGCAACTCATCAGGGTAGCAAGTAGTGGTGCATGGCGAGCATCATCATAACAAGCAAGGATGAAAGTGAGCAGTAATAAGCTAGTATCAGCTTCTTGAACTCTGGATGAAGAGAGAAAGGGTGTGTTTTGAGGAGAGGAGGAAGTCTTCTTCCTCTTGCAGTTTTGTTCCCCTTTCCTCCTGCTTCTATTTATCTTTTTCTTCCCCTTCTCTGAGCAGAGAAATCTTTGTGGATATGAGATTGGAGATGTGAGGATGTGAGAGAAAATCAACAAAAAGAATTT]
[+] EMBL AK063671 [AGGAGACCTCTCCTCTGTCTCTCCCCTCCTTTTTCCACTTTCCAAGACAACGCACCAACAAAAGCGTCGCCCCTCTTCCTCCTCCTCCTCCACCTCCATTGCTGCGCCCTCTCCCTCTCCCTCTCGCCTCCCTAGGCCACTCACTCCCCAAAACACCACCAACCTCCTTTCCTCTCTCTCTCTTCTTGAGTTCTTGAATCAATGCGTTCTTGAGTTCTTGAATCAATACCAGTATCACTTGTGCTAATAGTACTAGAGGAGGAGGTGTTGTTTCTTGCGATCTTGGGTTGATTGATATGGGTGTTCTTTGCTTCGGCGCTTCCAACATCCTCCTCTGCGCGGAGGACAGCAGCAGCGTGCTTGGCCTGGGCGGCTTTGGCGGCGGCGGCGGCGAGGTGGCGGCGGAGCTGGGGTGCGGCGGCGGTGGCGGCTTTGATTTCTTTGGC TTCGGTGGTGGTGCTGTGTTCCCCATCGACTCCGATGAGTTCGTGGCGTTGTTGGTGGAGAAGGAGATGGATCATCAGCCTCAGCGGGGGTATCTGGAGAAGCTGGAGCTCGGTGGATTGGAGTGTTCTTGGAGGAAAGATGCCATTGATTGGATTTGCAAGGTCCATTCCTACTACAACTTTGGACCACTCAGCCTTTACCTCGCAGTGAACTACCTGGATAGGTTCCTCTCCTCGTTTAATCTCCCTCATGACGAATCTTGGATGCAACAGTTGCTGTCAGTTAGTTGTCTATCTCTTGCTACGAAGATGGAGGAGACCGTGGTCCCTCTTCCCATGGACCTTCAGGTTTTTGATGCGGAATATGTGTTTGAAGCAAGGCATATTAAGAGGATGGAGCTTATTGTGATGAAAACCCTGAAATGGAGGCTGCAAGCTGTGACCCCATTCTCTTTCATCGGCTACTTCCTGGACAAGTTCAATGAAGGGAAGCCGCCGAGCTACACGCTGGCATCATGGTGCTCTGATCTCACAGTGGGCACTCTGAAAGACTCTAGGTTCTTGTCATTCAGACCTTCTGAGATTGCGGCCGCAGTGGTGTTAGCTGTGCTTGCTGAGAATCAGTTTCTTGTCTTCAACAGTGCCCTTGGAGAATCTGAAATCCCTGTAAATAAGGAGATGGTTATGAGATGCTATGAGCTGATGGTAGAGAAGGCATTGGTGAAGAAGATAAGGAACAGCAATGCAAGCTCTTCAGTTCCACACAGCCCGATCACCGTGTTGGACGCGGCGTGCTTCAGTTTTAGGAGTGATGACACAACACTAGGATCATCACAGTCAAACAGCAACAACAAAGATTACAACAGCCAGGACTCTGCTCCTGCTTCCAAGAGGAGGAGATTAAACACAACACCAATCTGATAACTGTACATACATAACTTGGCATTGCTTTGCAATTGTTCATTCAGTGAGCAACTCATCAGGGTAGCAAGTAGTGGTGCATGGCGAGCATCATCATAACAAGCAAGGATGAAAGTGAGCAGTAATAAGCTAGTATCAGCTTCTTGAACTCTGGATGAAGAGAGAAAGGGTGTGTTTTGAGGAGAGGAGGAAGTCTTCTTCCTCTTGCAGTTTTGTTCCCCTTTCCTCCTGCTTCTATTTATCTTTTTCTTCCCCTTCTCTGAGCAGAGAAATCTTTGTGGATATGAGATTGGAGATGTGAGGATGTGAGAGAAAATCAACAAAAAGAATTT]
[-] EMBL CB966437 [ AGAGGAGGAGGT CTGTTTCTTGCGATCCTGGGTTGATTGATATCCGTGTTCTTTGCTTCGGCGCTTCCNACATCCTCCTCTGCGCGGAGGACAGCAGCAGCGTGCTTGGCCTGGCCGGCTTTGGCGGCGGCGGCGGCGAGGTGGCGCCGGAGCTGGGGTGCGCCGGCGGTGCCGGCTTTGATTTCTTTGGC TTCGGTGGTGGTGCTGTGTTCCCCATCGACTCCGATGAGTTCGTGGCGTTGTTGGTGGAGAAGGAGATGGATCATCAGCCTCAGCGGGGGTATCTGGAGAAGCTGGAGCTCGGTGGATTGGAGTGTTCTTGGAGGAAAGATGCCATTGATTGGATTTGCAAGGTCCATTCCTACTACAACTTTGGACCACTCAGCCTTTACCTCGCAGTGAACTACCTGGATAGGTTCCTCTCCTCGTTTAATCTCCCTCATGACGAATCTTGGATGCAACAGTTGCTGTCAGTTAGTTGTCTATCTCTTGCTACGAAGATGGAGGAGACCGTGGTCCCTCTTCCCATGGACCTTCAGGTTTTTGATGCGGAATATGTGTTTGAAGCAAGGCATATTAAGAGGATGGAGCTTATTGTGATGAAAACCCTGAAATGGAGGCTGCAAGCTGTGACCCCATTCTCTTTCATCGGCTACTTCCTGGACAAGTTCAATGAAGGGAAGCCGCCGAGCTACACGCTGGCATCATGGTGCTCTGATCTCACAGTGGGCACTCTGAAAGACTCTA GTTCTTGTCATTCAGACC ]
[-] EMBL BU673702 [ TGTCGGCGGAGCTGGGGTGCGGCGNCGCTGGCGGCTTTGATTTC TTGGCTTTCGTTGGTGGTGCTGTGTTCCCCATCGACTCCGATGAGTTCGTGGCGTTGTTGGTGGAGAAGGAGATGGATCATCAGCCTCAGCGGGGGTATCTGGAGAAGCTGGAGCTCGGTGGATTGGAGTGTTCTTGGAGGAAAGATGCCATTGATTGGATTTGCAAGGTCCATTCCTACTACAACTTTGGACCACTCAGCCTTTACCTCGCAGTGAACTACCTGGATAGGTTCCTCTCCTCGTTTAATCTCCCTCATGACGAATCTTGGATGCAACAGTTGCTGTCAGTTAGTTGTCTATCTCTTGCTACGAAGATGGAGGAGACCGTGGTCCCTCTTCCCATGGACCTTCAGGTTTTTGATGCGGAATATGTGTTTGAAGCAAGGCATATTAAGAGGATGGAGCTTATTGTGATGAAAACCCTGAAATGGAGGCTGCAAGCTGTGACCCCATTCTCTTTCATCGGCTACTTCCTGGACAAGTTCAATGAAGGGAAGCCGCCGAGCTACACGCTGGCATCATGGTGCTCTGATCTCACAGTGGGCACTCTGAAAGACTCTAGGTTCTTGTCATTCAGACCTTCTGAGATgc ]
consensusID : consensus_6322#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 771 fasta sequence
[GATTGATATGGGTGTTCTTTGCTTCGGCGCTTCCAACATCCTCCTCTGCGCGGAGGACAGCAGCAGCGTGCTTGGCCTGGGCGGCTTTGGCGGCGGCGGCGGCGAGGTGGCGGCGGAGCTGGGGTGCGGCGGCGGTGGCGGCTTTGATTTCTTTGGCTTCGGTGGTGGTGCTGTGTTCCCCATCGACTCCGATGAGTTCGTGGCGTTGTTGGTGGAGAAGGAGATGGATCATCAGCCTCAGCGGGGGTATCTGGAGAAGCTGGAGCTCGGTGGATTGGAGTGTTCTTGGAGGAAAGATGCCATTGATTGGATTTGCAAGGTCCATTCCTACTACAACTTTGGACCACTCAGCCTTTACCTCGCAGTGAACTACCTGGATAGGTTCCTCTCCTCGTTTAATCTCCCTCATGACGAATCTTGGATGCAACAGTTGCTGTCAGTTAGTTGTCTATCTCTTGCTACGAAGATGGAGGAGACCGTGGTCCCTCTTCCCATGGACCTTCAGGTTTTTGATGCGGAATATGTGTTTGAAGCAAGGCATATTAAGAGGATGGAGCTTATTGTGATGAAAACCCTGAAATGGAGGCTGCAAGCTGTGACCCCATTCTCTTTCATCGGCTACTTCCTGGACAAGTTCAATGAAGGGAAGCCGCCGAGCTACACGCTGGCATCATGGTGCTCTGATCTCACAGTGGGCACTCTGAAAGACTCTAGGTTCTTGTCATTCAGACCTCTGAGATTGCGGCCGCAAGCTATTCCCTTAGGAGGGTT]
[-] EMBL BI306295 [GATTGATATGGGTGTTCTTTGCTTCGGCGCTTCCAACATCCTCCTCTGCGCGGAGGACAGCAGCAGCGTGCTTGGCCTGGGCGGCTTTGGCGGCGGCGGCGGCGAGGTGGCGGCGGAGCTGGGGTGCGGCGGCGGTGGCGGCTTTGATTTCTTTGGCTTCGGTGGTGGTGCTGTGTTCCCCATCGACTCCGATGAGTTCGTGGCGTTGTTGGTGGAGAAGGAGATGGATCATCAGCCTCAGCGGGGGTATCTGGAGAAGCTGGAGCTCGGTGGATTGGAGTGTTCTTGGAGGAAAGATGCCATTGATTGGATTTGCAAGGTCCATTCCTACTACAACTTTGGACCACTCAGCCTTTACCTCGCAGTGAACTACCTGGATAGGTTCCTCTCCTCGTTTAATCTCCCTCATGACGAATCTTGGATGCAACAGTTGCTGTCAGTTAGTTGTCTATCTCTTGCTACGAAGATGGAGGAGACCGTGGTCCCTCTTCCCATGGACCTTCAGGTTTTTGATGCGGAATATGTGTTTGAAGCAAGGCATATTAAGAGGATGGAGCTTATTGTGATGAAAACCCTGAAATGGAGGCTGCAAGCTGTGACCCCATTCTCTTTCATCGGCTACTTCCTGGACAAGTTCAATGAAGGGAAGCCGCCGAGCTACACGCTGGCATCATGGTGCTCTGATCTCACAGTGGGCACTCTGAAAGACTCTAGGTTCTTGTCATTCAGACCTCTGAGATTGCGGCCGCAAGCTATTCCCTTAGGAGGGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6322#0 AGGAGACCTCTCCTCTGTCTCTCCCCTCCTTTTTCCACTTTCCAAGACAACGCACCAACA 60
consensus_6322#1 ------------------------------------------------------------
consensus_6322#0 AAAGCGTCGCCCCTCTTCCTCCTCCTCCTCCACCTCCATTGCTGCGCCCTCTCCCTCTCC 120
consensus_6322#1 ------------------------------------------------------------
consensus_6322#0 CTCTCGCCTCCCTAGGCCACTCACTCCCCAAAACACCACCAACCTCCTTTCCTCTCTCTC 180
consensus_6322#1 ------------------------------------------------------------
consensus_6322#0 TCTTCTTGAGTTCTTGAATCAATGCGTTCTTGAGTTCTTGAATCAATACCAGTATCACTT 240
consensus_6322#1 ------------------------------------------------------------
consensus_6322#0 GTGCTAATAGTACTAGAGGAGGAGGTGTTGTTTCTTGCGATCTTGGGTTGATTGATATGG 300
consensus_6322#1 -------------------------------------------------GATTGATATGG 11
***********
consensus_6322#0 GTGTTCTTTGCTTCGGCGCTTCCAACATCCTCCTCTGCGCGGAGGACAGCAGCAGCGTGC 360
consensus_6322#1 GTGTTCTTTGCTTCGGCGCTTCCAACATCCTCCTCTGCGCGGAGGACAGCAGCAGCGTGC 71
************************************************************
consensus_6322#0 TTGGCCTGGGCGGCTTTGGCGGCGGCGGCGGCGAGGTGGCGGCGGAGCTGGGGTGCGGCG 420
consensus_6322#1 TTGGCCTGGGCGGCTTTGGCGGCGGCGGCGGCGAGGTGGCGGCGGAGCTGGGGTGCGGCG 131
************************************************************
consensus_6322#0 GCGGTGGCGGCTTTGATTTCTTTGGCTTCGGTGGTGGTGCTGTGTTCCCCATCGACTCCG 480
consensus_6322#1 GCGGTGGCGGCTTTGATTTCTTTGGCTTCGGTGGTGGTGCTGTGTTCCCCATCGACTCCG 191
************************************************************
consensus_6322#0 ATGAGTTCGTGGCGTTGTTGGTGGAGAAGGAGATGGATCATCAGCCTCAGCGGGGGTATC 540
consensus_6322#1 ATGAGTTCGTGGCGTTGTTGGTGGAGAAGGAGATGGATCATCAGCCTCAGCGGGGGTATC 251
************************************************************
consensus_6322#0 TGGAGAAGCTGGAGCTCGGTGGATTGGAGTGTTCTTGGAGGAAAGATGCCATTGATTGGA 600
consensus_6322#1 TGGAGAAGCTGGAGCTCGGTGGATTGGAGTGTTCTTGGAGGAAAGATGCCATTGATTGGA 311
************************************************************
consensus_6322#0 TTTGCAAGGTCCATTCCTACTACAACTTTGGACCACTCAGCCTTTACCTCGCAGTGAACT 660
consensus_6322#1 TTTGCAAGGTCCATTCCTACTACAACTTTGGACCACTCAGCCTTTACCTCGCAGTGAACT 371
************************************************************
consensus_6322#0 ACCTGGATAGGTTCCTCTCCTCGTTTAATCTCCCTCATGACGAATCTTGGATGCAACAGT 720
consensus_6322#1 ACCTGGATAGGTTCCTCTCCTCGTTTAATCTCCCTCATGACGAATCTTGGATGCAACAGT 431
************************************************************
consensus_6322#0 TGCTGTCAGTTAGTTGTCTATCTCTTGCTACGAAGATGGAGGAGACCGTGGTCCCTCTTC 780
consensus_6322#1 TGCTGTCAGTTAGTTGTCTATCTCTTGCTACGAAGATGGAGGAGACCGTGGTCCCTCTTC 491
************************************************************
consensus_6322#0 CCATGGACCTTCAGGTTTTTGATGCGGAATATGTGTTTGAAGCAAGGCATATTAAGAGGA 840
consensus_6322#1 CCATGGACCTTCAGGTTTTTGATGCGGAATATGTGTTTGAAGCAAGGCATATTAAGAGGA 551
************************************************************
consensus_6322#0 TGGAGCTTATTGTGATGAAAACCCTGAAATGGAGGCTGCAAGCTGTGACCCCATTCTCTT 900
consensus_6322#1 TGGAGCTTATTGTGATGAAAACCCTGAAATGGAGGCTGCAAGCTGTGACCCCATTCTCTT 611
************************************************************
consensus_6322#0 TCATCGGCTACTTCCTGGACAAGTTCAATGAAGGGAAGCCGCCGAGCTACACGCTGGCAT 960
consensus_6322#1 TCATCGGCTACTTCCTGGACAAGTTCAATGAAGGGAAGCCGCCGAGCTACACGCTGGCAT 671
************************************************************
consensus_6322#0 CATGGTGCTCTGATCTCACAGTGGGCACTCTGAAAGACTCTAGGTTCTTGTCATTCAGAC 1020
consensus_6322#1 CATGGTGCTCTGATCTCACAGTGGGCACTCTGAAAGACTCTAGGTTCTTGTCATTCAGAC 731
************************************************************
consensus_6322#0 CTTCTGAGATTGCGGCCGCAGTGGTGTTAGCTGTGCTTGCTGAGAATCAGTTTCTTGTCT 1080
consensus_6322#1 CT-CTGAGATTGCGGCCGCAA-GCTATTCCCTTAGGAGGGTT------------------ 771
** ***************** * * ** ** * * *
consensus_6322#0 TCAACAGTGCCCTTGGAGAATCTGAAATCCCTGTAAATAAGGAGATGGTTATGAGATGCT 1140
consensus_6322#1 ------------------------------------------------------------
consensus_6322#0 ATGAGCTGATGGTAGAGAAGGCATTGGTGAAGAAGATAAGGAACAGCAATGCAAGCTCTT 1200
consensus_6322#1 ------------------------------------------------------------
consensus_6322#0 CAGTTCCACACAGCCCGATCACCGTGTTGGACGCGGCGTGCTTCAGTTTTAGGAGTGATG 1260
consensus_6322#1 ------------------------------------------------------------
consensus_6322#0 ACACAACACTAGGATCATCACAGTCAAACAGCAACAACAAAGATTACAACAGCCAGGACT 1320
consensus_6322#1 ------------------------------------------------------------
consensus_6322#0 CTGCTCCTGCTTCCAAGAGGAGGAGATTAAACACAACACCAATCTGATAACTGTACATAC 1380
consensus_6322#1 ------------------------------------------------------------
consensus_6322#0 ATAACTTGGCATTGCTTTGCAATTGTTCATTCAGTGAGCAACTCATCAGGGTAGCAAGTA 1440
consensus_6322#1 ------------------------------------------------------------
consensus_6322#0 GTGGTGCATGGCGAGCATCATCATAACAAGCAAGGATGAAAGTGAGCAGTAATAAGCTAG 1500
consensus_6322#1 ------------------------------------------------------------
consensus_6322#0 TATCAGCTTCTTGAACTCTGGATGAAGAGAGAAAGGGTGTGTTTTGAGGAGAGGAGGAAG 1560
consensus_6322#1 ------------------------------------------------------------
consensus_6322#0 TCTTCTTCCTCTTGCAGTTTTGTTCCCCTTTCCTCCTGCTTCTATTTATCTTTTTCTTCC 1620
consensus_6322#1 ------------------------------------------------------------
consensus_6322#0 CCTTCTCTGAGCAGAGAAATCTTTGTGGATATGAGATTGGAGATGTGAGGATGTGAGAGA 1680
consensus_6322#1 ------------------------------------------------------------
consensus_6322#0 AAATCAACAAAAAGAATTT 1699
consensus_6322#1 -------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||