These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6322#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1699 fasta sequence [AGGAGACCTCTCCTCTGTCTCTCCCCTCCTTTTTCCACTTTCCAAGACAACGCACCAACAAAAGCGTCGCCCCTCTTCCTCCTCCTCCTCCACCTCCATTGCTGCGCCCTCTCCCTCTCCCTCTCGCCTCCCTAGGCCACTCACTCCCCAAAACACCACCAACCTCCTTTCCTCTCTCTCTCTTCTTGAGTTCTTGAATCAATGCGTTCTTGAGTTCTTGAATCAATACCAGTATCACTTGTGCTAATAGTACTAGAGGAGGAGGTGTTGTTTCTTGCGATCTTGGGTTGATTGATATGGGTGTTCTTTGCTTCGGCGCTTCCAACATCCTCCTCTGCGCGGAGGACAGCAGCAGCGTGCTTGGCCTGGGCGGCTTTGGCGGCGGCGGCGGCGAGGTGGCGGCGGAGCTGGGGTGCGGCGGCGGTGGCGGCTTTGATTTCTTTGGC-TTCGGTGGTGGTGCTGTGTTCCCCATCGACTCCGATGAGTTCGTGGCGTTGTTGGTGGAGAAGGAGATGGATCATCAGCCTCAGCGGGGGTATCTGGAGAAGCTGGAGCTCGGTGGATTGGAGTGTTCTTGGAGGAAAGATGCCATTGATTGGATTTGCAAGGTCCATTCCTACTACAACTTTGGACCACTCAGCCTTTACCTCGCAGTGAACTACCTGGATAGGTTCCTCTCCTCGTTTAATCTCCCTCATGACGAATCTTGGATGCAACAGTTGCTGTCAGTTAGTTGTCTATCTCTTGCTACGAAGATGGAGGAGACCGTGGTCCCTCTTCCCATGGACCTTCAGGTTTTTGATGCGGAATATGTGTTTGAAGCAAGGCATATTAAGAGGATGGAGCTTATTGTGATGAAAACCCTGAAATGGAGGCTGCAAGCTGTGACCCCATTCTCTTTCATCGGCTACTTCCTGGACAAGTTCAATGAAGGGAAGCCGCCGAGCTACACGCTGGCATCATGGTGCTCTGATCTCACAGTGGGCACTCTGAAAGACTCTAGGTTCTTGTCATTCAGACCTTCTGAGATTGCGGCCGCAGTGGTGTTAGCTGTGCTTGCTGAGAATCAGTTTCTTGTCTTCAACAGTGCCCTTGGAGAATCTGAAATCCCTGTAAATAAGGAGATGGTTATGAGATGCTATGAGCTGATGGTAGAGAAGGCATTGGTGAAGAAGATAAGGAACAGCAATGCAAGCTCTTCAGTTCCACACAGCCCGATCACCGTGTTGGACGCGGCGTGCTTCAGTTTTAGGAGTGATGACACAACACTAGGATCATCACAGTCAAACAGCAACAACAAAGATTACAACAGCCAGGACTCTGCTCCTGCTTCCAAGAGGAGGAGATTAAACACAACACCAATCTGATAACTGTACATACATAACTTGGCATTGCTTTGCAATTGTTCATTCAGTGAGCAACTCATCAGGGTAGCAAGTAGTGGTGCATGGCGAGCATCATCATAACAAGCAAGGATGAAAGTGAGCAGTAATAAGCTAGTATCAGCTTCTTGAACTCTGGATGAAGAGAGAAAGGGTGTGTTTTGAGGAGAGGAGGAAGTCTTCTTCCTCTTGCAGTTTTGTTCCCCTTTCCTCCTGCTTCTATTTATCTTTTTCTTCCCCTTCTCTGAGCAGAGAAATCTTTGTGGATATGAGATTGGAGATGTGAGGATGTGAGAGAAAATCAACAAAAAGAATTT] [+] EMBL AK063671 [AGGAGACCTCTCCTCTGTCTCTCCCCTCCTTTTTCCACTTTCCAAGACAACGCACCAACAAAAGCGTCGCCCCTCTTCCTCCTCCTCCTCCACCTCCATTGCTGCGCCCTCTCCCTCTCCCTCTCGCCTCCCTAGGCCACTCACTCCCCAAAACACCACCAACCTCCTTTCCTCTCTCTCTCTTCTTGAGTTCTTGAATCAATGCGTTCTTGAGTTCTTGAATCAATACCAGTATCACTTGTGCTAATAGTACTAGAGGAGGAGGTGTTGTTTCTTGCGATCTTGGGTTGATTGATATGGGTGTTCTTTGCTTCGGCGCTTCCAACATCCTCCTCTGCGCGGAGGACAGCAGCAGCGTGCTTGGCCTGGGCGGCTTTGGCGGCGGCGGCGGCGAGGTGGCGGCGGAGCTGGGGTGCGGCGGCGGTGGCGGCTTTGATTTCTTTGGC TTCGGTGGTGGTGCTGTGTTCCCCATCGACTCCGATGAGTTCGTGGCGTTGTTGGTGGAGAAGGAGATGGATCATCAGCCTCAGCGGGGGTATCTGGAGAAGCTGGAGCTCGGTGGATTGGAGTGTTCTTGGAGGAAAGATGCCATTGATTGGATTTGCAAGGTCCATTCCTACTACAACTTTGGACCACTCAGCCTTTACCTCGCAGTGAACTACCTGGATAGGTTCCTCTCCTCGTTTAATCTCCCTCATGACGAATCTTGGATGCAACAGTTGCTGTCAGTTAGTTGTCTATCTCTTGCTACGAAGATGGAGGAGACCGTGGTCCCTCTTCCCATGGACCTTCAGGTTTTTGATGCGGAATATGTGTTTGAAGCAAGGCATATTAAGAGGATGGAGCTTATTGTGATGAAAACCCTGAAATGGAGGCTGCAAGCTGTGACCCCATTCTCTTTCATCGGCTACTTCCTGGACAAGTTCAATGAAGGGAAGCCGCCGAGCTACACGCTGGCATCATGGTGCTCTGATCTCACAGTGGGCACTCTGAAAGACTCTAGGTTCTTGTCATTCAGACCTTCTGAGATTGCGGCCGCAGTGGTGTTAGCTGTGCTTGCTGAGAATCAGTTTCTTGTCTTCAACAGTGCCCTTGGAGAATCTGAAATCCCTGTAAATAAGGAGATGGTTATGAGATGCTATGAGCTGATGGTAGAGAAGGCATTGGTGAAGAAGATAAGGAACAGCAATGCAAGCTCTTCAGTTCCACACAGCCCGATCACCGTGTTGGACGCGGCGTGCTTCAGTTTTAGGAGTGATGACACAACACTAGGATCATCACAGTCAAACAGCAACAACAAAGATTACAACAGCCAGGACTCTGCTCCTGCTTCCAAGAGGAGGAGATTAAACACAACACCAATCTGATAACTGTACATACATAACTTGGCATTGCTTTGCAATTGTTCATTCAGTGAGCAACTCATCAGGGTAGCAAGTAGTGGTGCATGGCGAGCATCATCATAACAAGCAAGGATGAAAGTGAGCAGTAATAAGCTAGTATCAGCTTCTTGAACTCTGGATGAAGAGAGAAAGGGTGTGTTTTGAGGAGAGGAGGAAGTCTTCTTCCTCTTGCAGTTTTGTTCCCCTTTCCTCCTGCTTCTATTTATCTTTTTCTTCCCCTTCTCTGAGCAGAGAAATCTTTGTGGATATGAGATTGGAGATGTGAGGATGTGAGAGAAAATCAACAAAAAGAATTT] [-] EMBL CB966437 [ AGAGGAGGAGGT CTGTTTCTTGCGATCCTGGGTTGATTGATATCCGTGTTCTTTGCTTCGGCGCTTCCNACATCCTCCTCTGCGCGGAGGACAGCAGCAGCGTGCTTGGCCTGGCCGGCTTTGGCGGCGGCGGCGGCGAGGTGGCGCCGGAGCTGGGGTGCGCCGGCGGTGCCGGCTTTGATTTCTTTGGC TTCGGTGGTGGTGCTGTGTTCCCCATCGACTCCGATGAGTTCGTGGCGTTGTTGGTGGAGAAGGAGATGGATCATCAGCCTCAGCGGGGGTATCTGGAGAAGCTGGAGCTCGGTGGATTGGAGTGTTCTTGGAGGAAAGATGCCATTGATTGGATTTGCAAGGTCCATTCCTACTACAACTTTGGACCACTCAGCCTTTACCTCGCAGTGAACTACCTGGATAGGTTCCTCTCCTCGTTTAATCTCCCTCATGACGAATCTTGGATGCAACAGTTGCTGTCAGTTAGTTGTCTATCTCTTGCTACGAAGATGGAGGAGACCGTGGTCCCTCTTCCCATGGACCTTCAGGTTTTTGATGCGGAATATGTGTTTGAAGCAAGGCATATTAAGAGGATGGAGCTTATTGTGATGAAAACCCTGAAATGGAGGCTGCAAGCTGTGACCCCATTCTCTTTCATCGGCTACTTCCTGGACAAGTTCAATGAAGGGAAGCCGCCGAGCTACACGCTGGCATCATGGTGCTCTGATCTCACAGTGGGCACTCTGAAAGACTCTA GTTCTTGTCATTCAGACC ] [-] EMBL BU673702 [ TGTCGGCGGAGCTGGGGTGCGGCGNCGCTGGCGGCTTTGATTTC TTGGCTTTCGTTGGTGGTGCTGTGTTCCCCATCGACTCCGATGAGTTCGTGGCGTTGTTGGTGGAGAAGGAGATGGATCATCAGCCTCAGCGGGGGTATCTGGAGAAGCTGGAGCTCGGTGGATTGGAGTGTTCTTGGAGGAAAGATGCCATTGATTGGATTTGCAAGGTCCATTCCTACTACAACTTTGGACCACTCAGCCTTTACCTCGCAGTGAACTACCTGGATAGGTTCCTCTCCTCGTTTAATCTCCCTCATGACGAATCTTGGATGCAACAGTTGCTGTCAGTTAGTTGTCTATCTCTTGCTACGAAGATGGAGGAGACCGTGGTCCCTCTTCCCATGGACCTTCAGGTTTTTGATGCGGAATATGTGTTTGAAGCAAGGCATATTAAGAGGATGGAGCTTATTGTGATGAAAACCCTGAAATGGAGGCTGCAAGCTGTGACCCCATTCTCTTTCATCGGCTACTTCCTGGACAAGTTCAATGAAGGGAAGCCGCCGAGCTACACGCTGGCATCATGGTGCTCTGATCTCACAGTGGGCACTCTGAAAGACTCTAGGTTCTTGTCATTCAGACCTTCTGAGATgc ] consensusID : consensus_6322#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 771 fasta sequence [GATTGATATGGGTGTTCTTTGCTTCGGCGCTTCCAACATCCTCCTCTGCGCGGAGGACAGCAGCAGCGTGCTTGGCCTGGGCGGCTTTGGCGGCGGCGGCGGCGAGGTGGCGGCGGAGCTGGGGTGCGGCGGCGGTGGCGGCTTTGATTTCTTTGGCTTCGGTGGTGGTGCTGTGTTCCCCATCGACTCCGATGAGTTCGTGGCGTTGTTGGTGGAGAAGGAGATGGATCATCAGCCTCAGCGGGGGTATCTGGAGAAGCTGGAGCTCGGTGGATTGGAGTGTTCTTGGAGGAAAGATGCCATTGATTGGATTTGCAAGGTCCATTCCTACTACAACTTTGGACCACTCAGCCTTTACCTCGCAGTGAACTACCTGGATAGGTTCCTCTCCTCGTTTAATCTCCCTCATGACGAATCTTGGATGCAACAGTTGCTGTCAGTTAGTTGTCTATCTCTTGCTACGAAGATGGAGGAGACCGTGGTCCCTCTTCCCATGGACCTTCAGGTTTTTGATGCGGAATATGTGTTTGAAGCAAGGCATATTAAGAGGATGGAGCTTATTGTGATGAAAACCCTGAAATGGAGGCTGCAAGCTGTGACCCCATTCTCTTTCATCGGCTACTTCCTGGACAAGTTCAATGAAGGGAAGCCGCCGAGCTACACGCTGGCATCATGGTGCTCTGATCTCACAGTGGGCACTCTGAAAGACTCTAGGTTCTTGTCATTCAGACCTCTGAGATTGCGGCCGCAAGCTATTCCCTTAGGAGGGTT] [-] EMBL BI306295 [GATTGATATGGGTGTTCTTTGCTTCGGCGCTTCCAACATCCTCCTCTGCGCGGAGGACAGCAGCAGCGTGCTTGGCCTGGGCGGCTTTGGCGGCGGCGGCGGCGAGGTGGCGGCGGAGCTGGGGTGCGGCGGCGGTGGCGGCTTTGATTTCTTTGGCTTCGGTGGTGGTGCTGTGTTCCCCATCGACTCCGATGAGTTCGTGGCGTTGTTGGTGGAGAAGGAGATGGATCATCAGCCTCAGCGGGGGTATCTGGAGAAGCTGGAGCTCGGTGGATTGGAGTGTTCTTGGAGGAAAGATGCCATTGATTGGATTTGCAAGGTCCATTCCTACTACAACTTTGGACCACTCAGCCTTTACCTCGCAGTGAACTACCTGGATAGGTTCCTCTCCTCGTTTAATCTCCCTCATGACGAATCTTGGATGCAACAGTTGCTGTCAGTTAGTTGTCTATCTCTTGCTACGAAGATGGAGGAGACCGTGGTCCCTCTTCCCATGGACCTTCAGGTTTTTGATGCGGAATATGTGTTTGAAGCAAGGCATATTAAGAGGATGGAGCTTATTGTGATGAAAACCCTGAAATGGAGGCTGCAAGCTGTGACCCCATTCTCTTTCATCGGCTACTTCCTGGACAAGTTCAATGAAGGGAAGCCGCCGAGCTACACGCTGGCATCATGGTGCTCTGATCTCACAGTGGGCACTCTGAAAGACTCTAGGTTCTTGTCATTCAGACCTCTGAGATTGCGGCCGCAAGCTATTCCCTTAGGAGGGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6322#0 AGGAGACCTCTCCTCTGTCTCTCCCCTCCTTTTTCCACTTTCCAAGACAACGCACCAACA 60 consensus_6322#1 ------------------------------------------------------------ consensus_6322#0 AAAGCGTCGCCCCTCTTCCTCCTCCTCCTCCACCTCCATTGCTGCGCCCTCTCCCTCTCC 120 consensus_6322#1 ------------------------------------------------------------ consensus_6322#0 CTCTCGCCTCCCTAGGCCACTCACTCCCCAAAACACCACCAACCTCCTTTCCTCTCTCTC 180 consensus_6322#1 ------------------------------------------------------------ consensus_6322#0 TCTTCTTGAGTTCTTGAATCAATGCGTTCTTGAGTTCTTGAATCAATACCAGTATCACTT 240 consensus_6322#1 ------------------------------------------------------------ consensus_6322#0 GTGCTAATAGTACTAGAGGAGGAGGTGTTGTTTCTTGCGATCTTGGGTTGATTGATATGG 300 consensus_6322#1 -------------------------------------------------GATTGATATGG 11 *********** consensus_6322#0 GTGTTCTTTGCTTCGGCGCTTCCAACATCCTCCTCTGCGCGGAGGACAGCAGCAGCGTGC 360 consensus_6322#1 GTGTTCTTTGCTTCGGCGCTTCCAACATCCTCCTCTGCGCGGAGGACAGCAGCAGCGTGC 71 ************************************************************ consensus_6322#0 TTGGCCTGGGCGGCTTTGGCGGCGGCGGCGGCGAGGTGGCGGCGGAGCTGGGGTGCGGCG 420 consensus_6322#1 TTGGCCTGGGCGGCTTTGGCGGCGGCGGCGGCGAGGTGGCGGCGGAGCTGGGGTGCGGCG 131 ************************************************************ consensus_6322#0 GCGGTGGCGGCTTTGATTTCTTTGGCTTCGGTGGTGGTGCTGTGTTCCCCATCGACTCCG 480 consensus_6322#1 GCGGTGGCGGCTTTGATTTCTTTGGCTTCGGTGGTGGTGCTGTGTTCCCCATCGACTCCG 191 ************************************************************ consensus_6322#0 ATGAGTTCGTGGCGTTGTTGGTGGAGAAGGAGATGGATCATCAGCCTCAGCGGGGGTATC 540 consensus_6322#1 ATGAGTTCGTGGCGTTGTTGGTGGAGAAGGAGATGGATCATCAGCCTCAGCGGGGGTATC 251 ************************************************************ consensus_6322#0 TGGAGAAGCTGGAGCTCGGTGGATTGGAGTGTTCTTGGAGGAAAGATGCCATTGATTGGA 600 consensus_6322#1 TGGAGAAGCTGGAGCTCGGTGGATTGGAGTGTTCTTGGAGGAAAGATGCCATTGATTGGA 311 ************************************************************ consensus_6322#0 TTTGCAAGGTCCATTCCTACTACAACTTTGGACCACTCAGCCTTTACCTCGCAGTGAACT 660 consensus_6322#1 TTTGCAAGGTCCATTCCTACTACAACTTTGGACCACTCAGCCTTTACCTCGCAGTGAACT 371 ************************************************************ consensus_6322#0 ACCTGGATAGGTTCCTCTCCTCGTTTAATCTCCCTCATGACGAATCTTGGATGCAACAGT 720 consensus_6322#1 ACCTGGATAGGTTCCTCTCCTCGTTTAATCTCCCTCATGACGAATCTTGGATGCAACAGT 431 ************************************************************ consensus_6322#0 TGCTGTCAGTTAGTTGTCTATCTCTTGCTACGAAGATGGAGGAGACCGTGGTCCCTCTTC 780 consensus_6322#1 TGCTGTCAGTTAGTTGTCTATCTCTTGCTACGAAGATGGAGGAGACCGTGGTCCCTCTTC 491 ************************************************************ consensus_6322#0 CCATGGACCTTCAGGTTTTTGATGCGGAATATGTGTTTGAAGCAAGGCATATTAAGAGGA 840 consensus_6322#1 CCATGGACCTTCAGGTTTTTGATGCGGAATATGTGTTTGAAGCAAGGCATATTAAGAGGA 551 ************************************************************ consensus_6322#0 TGGAGCTTATTGTGATGAAAACCCTGAAATGGAGGCTGCAAGCTGTGACCCCATTCTCTT 900 consensus_6322#1 TGGAGCTTATTGTGATGAAAACCCTGAAATGGAGGCTGCAAGCTGTGACCCCATTCTCTT 611 ************************************************************ consensus_6322#0 TCATCGGCTACTTCCTGGACAAGTTCAATGAAGGGAAGCCGCCGAGCTACACGCTGGCAT 960 consensus_6322#1 TCATCGGCTACTTCCTGGACAAGTTCAATGAAGGGAAGCCGCCGAGCTACACGCTGGCAT 671 ************************************************************ consensus_6322#0 CATGGTGCTCTGATCTCACAGTGGGCACTCTGAAAGACTCTAGGTTCTTGTCATTCAGAC 1020 consensus_6322#1 CATGGTGCTCTGATCTCACAGTGGGCACTCTGAAAGACTCTAGGTTCTTGTCATTCAGAC 731 ************************************************************ consensus_6322#0 CTTCTGAGATTGCGGCCGCAGTGGTGTTAGCTGTGCTTGCTGAGAATCAGTTTCTTGTCT 1080 consensus_6322#1 CT-CTGAGATTGCGGCCGCAA-GCTATTCCCTTAGGAGGGTT------------------ 771 ** ***************** * * ** ** * * * consensus_6322#0 TCAACAGTGCCCTTGGAGAATCTGAAATCCCTGTAAATAAGGAGATGGTTATGAGATGCT 1140 consensus_6322#1 ------------------------------------------------------------ consensus_6322#0 ATGAGCTGATGGTAGAGAAGGCATTGGTGAAGAAGATAAGGAACAGCAATGCAAGCTCTT 1200 consensus_6322#1 ------------------------------------------------------------ consensus_6322#0 CAGTTCCACACAGCCCGATCACCGTGTTGGACGCGGCGTGCTTCAGTTTTAGGAGTGATG 1260 consensus_6322#1 ------------------------------------------------------------ consensus_6322#0 ACACAACACTAGGATCATCACAGTCAAACAGCAACAACAAAGATTACAACAGCCAGGACT 1320 consensus_6322#1 ------------------------------------------------------------ consensus_6322#0 CTGCTCCTGCTTCCAAGAGGAGGAGATTAAACACAACACCAATCTGATAACTGTACATAC 1380 consensus_6322#1 ------------------------------------------------------------ consensus_6322#0 ATAACTTGGCATTGCTTTGCAATTGTTCATTCAGTGAGCAACTCATCAGGGTAGCAAGTA 1440 consensus_6322#1 ------------------------------------------------------------ consensus_6322#0 GTGGTGCATGGCGAGCATCATCATAACAAGCAAGGATGAAAGTGAGCAGTAATAAGCTAG 1500 consensus_6322#1 ------------------------------------------------------------ consensus_6322#0 TATCAGCTTCTTGAACTCTGGATGAAGAGAGAAAGGGTGTGTTTTGAGGAGAGGAGGAAG 1560 consensus_6322#1 ------------------------------------------------------------ consensus_6322#0 TCTTCTTCCTCTTGCAGTTTTGTTCCCCTTTCCTCCTGCTTCTATTTATCTTTTTCTTCC 1620 consensus_6322#1 ------------------------------------------------------------ consensus_6322#0 CCTTCTCTGAGCAGAGAAATCTTTGTGGATATGAGATTGGAGATGTGAGGATGTGAGAGA 1680 consensus_6322#1 ------------------------------------------------------------ consensus_6322#0 AAATCAACAAAAAGAATTT 1699 consensus_6322#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||