These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6330#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1981 fasta sequence [ATCGGGGCATTCGCCAGCCACACCTCTCTCCATCCTCTCGTTCTCTCTCTGTCTCCTCTTCTCTCTCCCCCGACGGAGAGGAGAGAAGGCGAGGAGCCGGGGGAGATGGGATCGGACTCGCCGCCCAAGAAATGGGGCCTCAGGGAGCAGCGCGAAGCCTACCTCCGGTGGTTCTCCCTCGCCGACGACGATGGAGATGGGCGCGTGACGGGGAAAGACGCGCTCAAGTTCTTCGCCATGTCGAATCTCTCCCGCCCCGAGCTGAAGCAGGTCTGGGCAATCGCTGATTCCAAGCGTCAGGGTTATCTTGGATTCTCGGAGTTTATGACCGCAATGCAGCTGGTTTCTCTTGCACAAGCTGGGAATGAGATTAGTCAGGACACCCTTGCACATGCAGATTTGGAGACGTTGCTACCTCCGACAATGGAAGGTCTGGACAAAAAACTAAAAAATAATTCTATGAGCAAGAGCAACTCTGATATTGTCGTACGTCATCCGTCAGAATTGCCTGCATCAGCCAACTGGTTTAACTCCAAGTCAGGAAAGAAGATTCCTTTAAGATCAGTTACTTCGATCATCGATGGGTTAAAGAAATCTTACATTGAGAAGTTGAGGCCACTAGAAAAAACATATCAGTTCGATGACTTTGTTTCACCTTTGCTGACTAGCAGTGATTTCGATGCGAAGCCAATGGTCATGTTGCTGGGTCAGTATTCCACAGGAAAAACCACATTCATAAAGCATTTACTGAAGACAAATTATCCAGGTGCTCATATTGGTCCAGAGCCTACAACTGACAGATTTGTTGTTATTACTTCTGGACCTGATGAAAGATGCATCCCTGGAAACACAATTGCCGTGCAAGCAGACATGCCATATAGTGGCTTGTCATCTTTTGGGACAGCATTTCTATCAAAGTTTGAATGTTCTCAGATGCCTCATCCACTACTGGATCATATAACCTTTGTGGACACTCCTGGAGTTTTATCAGGGGAAAAGCAGCGAACACAGCGTAGCTAT-GACTTCACTGGAGTTACATCATGGTTTGCAGCCAAGTGTGACCTAATTCTTCTCCTATTTGATCCACATAAGCTTGACATCAGTGATGAGTTCAAGCGTGTAATTGGGTCACTCAAAGGGCATGATGATAAAATACGTATAGTTCTGAACAAAGCAGACCAAGTTGATGCACAACAACTCATGAGAGTCTATGGAGCACTGCTATGGTCGCTTGGGAAAGTTCTGGACACACCAGAAGTCATGCGTGTGTACATAGGTTCATTTAACGACAAGCCCATTAGGGAGACAGTAGCTGGGCCACTGGGTAAAGAACTGTTTGAGAAAGAACAAGAAGACCTGCTCTCCGACCTGAATGACATTCCAAAGAAAGCCTGTGACCGTCGAATCAACGAATTCGTGAAGCGTTCGAGGTCAGCCAAGGTCCATGCTCACATAATCAGCCACCTGAAGAAGGAGATGCCGGCGCTGATGGGCAAGGCCAAGGCGCAGCAGCGGCTGCTCGACACCCTCGACGAGCAGTTCGCCAAGGTTCAGAAGGAGCTGCACTTGCCGGCCGGCGACTTCCCCAGCGTGGATGAGTACAGGGAGACACTGAGCGCCTACAACTTCGACAAGTTCGAGAGGCTGAAGCCCAAGCTGGTGCAGGGCGTCGACGACATGCTCGCCTACGACATCCCCGATCTCCTCAAGAGCTTCAGGAACCCCTACGAATGAATGAGCAAGCAGCAGCAGTCAGAGAAGGCGTGTTCGACCACAATACAAGCATGGATCTTTCTTGTTCACAAAAAAAGAATGTGATCCGTGAATCGTCAATCCATCTCTTTTGTGCTCCACGAAGGCGCGATATATGGCTTTTTGTTGGCGATTTTCTTCAGTCTTCTGCAGTGATCTCTGAAGAAGGCAGTGTGACAGGAATGTGCAAAGTGAAGCCGATTGGAAAGTTTGGAACAGCGTTAAACTG] [+] EMBL AK071148 [ATCGGGGCATTCGCCAGCCACACCTCTCTCCATCCTCTCGTTCTCTCTCTGTCTCCTCTTCTCTCTCCCCCGACGGAGAGGAGAGAAGGCGAGGAGCCGGGGGAGATGGGATCGGACTCGCCGCCCAAGAAATGGGGCCTCAGGGAGCAGCGCGAAGCCTACCTCCGGTGGTTCTCCCTCGCCGACGACGATGGAGATGGGCGCGTGACGGGGAAAGACGCGCTCAAGTTCTTCGCCATGTCGAATCTCTCCCGCCCCGAGCTGAAGCAGGTCTGGGCAATCGCTGATTCCAAGCGTCAGGGTTATCTTGGATTCTCGGAGTTTATGACCGCAATGCAGCTGGTTTCTCTTGCACAAGCTGGGAATGAGATTAGTCAGGACACCCTTGCACATGCAGATTTGGAGACGTTGCTACCTCCGACAATGGAAGGTCTGGACAAAAAACTAAAAAATAATTCTATGAGCAAGAGCAACTCTGATATTGTCGTACGTCATCCGTCAGAATTGCCTGCATCAGCCAACTGGTTTAACTCCAAGTCAGGAAAGAAGATTCCTTTAAGATCAGTTACTTCGATCATCGATGGGTTAAAGAAATCTTACATTGAGAAGTTGAGGCCACTAGAAAAAACATATCAGTTCGATGACTTTGTTTCACCTTTGCTGACTAGCAGTGATTTCGATGCGAAGCCAATGGTCATGTTGCTGGGTCAGTATTCCACAGGAAAAACCACATTCATAAAGCATTTACTGAAGACAAATTATCCAGGTGCTCATATTGGTCCAGAGCCTACAACTGACAGATTTGTTGTTATTACTTCTGGACCTGATGAAAGATGCATCCCTGGAAACACAATTGCCGTGCAAGCAGACATGCCATATAGTGGCTTGTCATCTTTTGGGACAGCATTTCTATCAAAGTTTGAATGTTCTCAGATGCCTCATCCACTACTGGATCATATAACCTTTGTGGACACTCCTGGAGTTTTATCAGGGGAAAAGCAGCGAACACAGCGTAGCTAT GACTTCACTGGAGTTACATCATGGTTTGCAGCCAAGTGTGACCTAATTCTTCTCCTATTTGATCCACATAAGCTTGACATCAGTGATGAGTTCAAGCGTGTAATTGGGTCACTCAAAGGGCATGATGATAAAATACGTATAGTTCTGAACAAAGCAGACCAAGTTGATGCACAACAACTCATGAGAGTCTATGGAGCACTGCTATGGTCGCTTGGGAAAGTTCTGGACACACCAGAAGTCATGCGTGTGTACATAGGTTCATTTAACGACAAGCCCATTAGGGAGACAGTAGCTGGGCCACTGGGTAAAGAACTGTTTGAGAAAGAACAAGAAGACCTGCTCTCCGACCTGAATGACATTCCAAAGAAAGCCTGTGACCGTCGAATCAACGAATTCGTGAAGCGTTCGAGGTCAGCCAAGGTCCATGCTCACATAATCAGCCACCTGAAGAAGGAGATGCCGGCGCTGATGGGCAAGGCCAAGGCGCAGCAGCGGCTGCTCGACACCCTCGACGAGCAGTTCGCCAAGGTTCAGAAGGAGCTGCACTTGCCGGCCGGCGACTTCCCCAGCGTGGATGAGTACAGGGAGACACTGAGCGCCTACAACTTCGACAAGTTCGAGAGGCTGAAGCCCAAGCTGGTGCAGGGCGTCGACGACATGCTCGCCTACGACATCCCCGATCTCCTCAAGAGCTTCAGGAACCCCTACGAATGAATGAGCAAGCAGCAGCAGTCAGAGAAGGCGTGTTCGACCACAATACAAGCATGGATCTTTCTTGTTCACAAAAAAAGAATGTGATCCGTGAATCGTCAATCCATCTCTTTTGTGCTCCACGAAGGCGCGATATATGGCTTTTTGTTGGCGATTTTCTTCAGTCTTCTGCAGTGATCTCTGAAGAAGGCAGTGTGACAGGAATGTGCAAAGTGAAGCCGATTGGAAAGTTTGGAACAGCGTTAAACTG] [+] EMBL C98851 [ TTGCCGTGCAAGCAGACATGCCATATAGTGGCTTGTCATCTTTTGGGACAGCATTTCTATCAAAGTTTGAATGTTCTCAGATGCCTCATCCACTACTGGATCATATAACCTTTGTGGACACTCCTGGAGTTTTATCAGGGGAAAAGCAGCGAACACAGCGTA NTATGGACTTCACTGGAGTTACATCATGGTTTGCAGCCAAGTGTGACCTAATTCTTCTCCTATTTGATCCACATAAGCTTGACATCAGTGATGAGTTCAAGCGTGTAATTGGGNCACTCCAANGGCATGATGATAAAATACGTAT ] consensusID : consensus_6330#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 712 fasta sequence [GCAGACCAAGTTGATGCACAACAACTCATGAGAGTCTATGGAGCACTGCTATGGTCGCTGGGAAAGTTCTGAACACACCAGAAGTCATGCGTGTGTACATAGGTTCATTTAACGACAAGCCCATTAGGGAGACAGTAGCTGGGCCACTGGGTAAAGAACTGTNTGAGAAAGAACAAGAAGACCTGCTCTCCGACCTGAATGACATTCCAAAGAAAGCCTGTGACCGTCGAATCAACGAATTCGCGAAGCGTTCGAGGTCAGCCAAGGTCCATGCTCACATAATCAGCCACCTGAAGAAGGAGATGCCGGCGCTGATGGGCAAGGCCAAGGCGCAGCAGCGGCTGCTCGACACCCTCGACGAGCAGTTCGCCAAGGTTCAGAAGGAGCTGCACTTGCCGGCCGGCGACTTCCCCAGCGTGGATGAGTACAGGGAGACACTGAGCGCCTACAACTTCGACAAGTTCGAGAGGCTGAAGCCCAAGCTGGTGCAGGGCGTCGACGACATGCTCGCCTACGACATCCCCGATCTCCTCAAGAGCTTCAGGAACCCCTACGAATGAATGAGCAAGCAGCAGCAGTCAGAGAAGGCGTGTTCGACCACAATACAAGCATGGATCTTTCTTGTTCACAAAAAAAGGATGTGATCCGTGAATCGTCAATCCATCTCTTTTGTGCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA762617 [GCAGACCAAGTTGATGCACAACAACTCATGAGAGTCTATGGAGCACTGCTATGGTCGCTGGGAAAGTTCTGAACACACCAGAAGTCATGCGTGTGTACATAGGTTCATTTAACGACAAGCCCATTAGGGAGACAGTAGCTGGGCCACTGGGTAAAGAACTGTNTGAGAAAGAACAAGAAGACCTGCTCTCCGACCTGAATGACATTCCAAAGAAAGCCTGTGACCGTCGAATCAACGAATTCGCGAAGCGTTCGAGGTCAGCCAAGGTCCATGCTCACATAATCAGCCACCTGAAGAAGGAGATGCCGGCGCTGATGGGCAAGGCCAAGGCGCAGCAGCGGCTGCTCGACACCCTCGACGAGCAGTTCGCCAAGGTTCAGAAGGAGCTGCACTTGCCGGCCGGCGACTTCCCCAGCGTGGATGAGTACAGGGAGACACTGAGCGCCTACAACTTCGACAAGTTCGAGAGGCTGAAGCCCAAGCTGGTGCAGGGCGTCGACGACATGCTCGCCTACGACATCCCCGATCTCCTCAAGAGCTTCAGGAACCCCTACGAATGAATGAGCAAGCAGCAGCAGTCAGAGAAGGCGTGTTCGACCACAATACAAGCATGGATCTTTCTTGTTCACAAAAAAAGGATGTGATCCGTGAATCGTCAATCCATCTCTTTTGTGCTCCAAAAAAAAAAAAA ] [+] EMBL C98852 [ GAAGGAGNTGCANTTGCCGGCCGGCGACTTCCCCAGCGTGGATGAGTACAGGGAGACACTGAGCGCCTACAACTTCGACAAGTTCGAGA GCTGAAGCCCAAGCTGGTGCAGGGCGTCGACGACATGCTCGCCTACGACATCCCCGATCTCCTCAAGAGCTTCAGGAACCCCTACGAATGAATGAGCAAGCAGCAGCAGTCAGAGAAGGCGTGTTCGACCACAATACAAGCATGGATCTTTCTTGTTCACAAAAAAAGAATGTGATCCGTGAATCGTCAATCCATCTCTTTTGTGCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6330#0 ATCGGGGCATTCGCCAGCCACACCTCTCTCCATCCTCTCGTTCTCTCTCTGTCTCCTCTT 60 consensus_6330#1 ------------------------------------------------------------ consensus_6330#0 CTCTCTCCCCCGACGGAGAGGAGAGAAGGCGAGGAGCCGGGGGAGATGGGATCGGACTCG 120 consensus_6330#1 ------------------------------------------------------------ consensus_6330#0 CCGCCCAAGAAATGGGGCCTCAGGGAGCAGCGCGAAGCCTACCTCCGGTGGTTCTCCCTC 180 consensus_6330#1 ------------------------------------------------------------ consensus_6330#0 GCCGACGACGATGGAGATGGGCGCGTGACGGGGAAAGACGCGCTCAAGTTCTTCGCCATG 240 consensus_6330#1 ------------------------------------------------------------ consensus_6330#0 TCGAATCTCTCCCGCCCCGAGCTGAAGCAGGTCTGGGCAATCGCTGATTCCAAGCGTCAG 300 consensus_6330#1 ------------------------------------------------------------ consensus_6330#0 GGTTATCTTGGATTCTCGGAGTTTATGACCGCAATGCAGCTGGTTTCTCTTGCACAAGCT 360 consensus_6330#1 ------------------------------------------------------------ consensus_6330#0 GGGAATGAGATTAGTCAGGACACCCTTGCACATGCAGATTTGGAGACGTTGCTACCTCCG 420 consensus_6330#1 ------------------------------------------------------------ consensus_6330#0 ACAATGGAAGGTCTGGACAAAAAACTAAAAAATAATTCTATGAGCAAGAGCAACTCTGAT 480 consensus_6330#1 ------------------------------------------------------------ consensus_6330#0 ATTGTCGTACGTCATCCGTCAGAATTGCCTGCATCAGCCAACTGGTTTAACTCCAAGTCA 540 consensus_6330#1 ------------------------------------------------------------ consensus_6330#0 GGAAAGAAGATTCCTTTAAGATCAGTTACTTCGATCATCGATGGGTTAAAGAAATCTTAC 600 consensus_6330#1 ------------------------------------------------------------ consensus_6330#0 ATTGAGAAGTTGAGGCCACTAGAAAAAACATATCAGTTCGATGACTTTGTTTCACCTTTG 660 consensus_6330#1 ------------------------------------------------------------ consensus_6330#0 CTGACTAGCAGTGATTTCGATGCGAAGCCAATGGTCATGTTGCTGGGTCAGTATTCCACA 720 consensus_6330#1 ------------------------------------------------------------ consensus_6330#0 GGAAAAACCACATTCATAAAGCATTTACTGAAGACAAATTATCCAGGTGCTCATATTGGT 780 consensus_6330#1 ------------------------------------------------------------ consensus_6330#0 CCAGAGCCTACAACTGACAGATTTGTTGTTATTACTTCTGGACCTGATGAAAGATGCATC 840 consensus_6330#1 ------------------------------------------------------------ consensus_6330#0 CCTGGAAACACAATTGCCGTGCAAGCAGACATGCCATATAGTGGCTTGTCATCTTTTGGG 900 consensus_6330#1 ------------------------------------------------------------ consensus_6330#0 ACAGCATTTCTATCAAAGTTTGAATGTTCTCAGATGCCTCATCCACTACTGGATCATATA 960 consensus_6330#1 ------------------------------------------------------------ consensus_6330#0 ACCTTTGTGGACACTCCTGGAGTTTTATCAGGGGAAAAGCAGCGAACACAGCGTAGCTAT 1020 consensus_6330#1 ------------------------------------------------------------ consensus_6330#0 GACTTCACTGGAGTTACATCATGGTTTGCAGCCAAGTGTGACCTAATTCTTCTCCTATTT 1080 consensus_6330#1 ------------------------------------------------------------ consensus_6330#0 GATCCACATAAGCTTGACATCAGTGATGAGTTCAAGCGTGTAATTGGGTCACTCAAAGGG 1140 consensus_6330#1 ------------------------------------------------------------ consensus_6330#0 CATGATGATAAAATACGTATAGTTCTGAACAAAGCAGACCAAGTTGATGCACAACAACTC 1200 consensus_6330#1 ---------------------------------GCAGACCAAGTTGATGCACAACAACTC 27 *************************** consensus_6330#0 ATGAGAGTCTATGGAGCACTGCTATGGTCGCTTGGGAAAGTTCTGGACACACCAGAAGTC 1260 consensus_6330#1 ATGAGAGTCTATGGAGCACTGCTATGGTCGCT-GGGAAAGTTCTGAACACACCAGAAGTC 86 ******************************** ************ ************** consensus_6330#0 ATGCGTGTGTACATAGGTTCATTTAACGACAAGCCCATTAGGGAGACAGTAGCTGGGCCA 1320 consensus_6330#1 ATGCGTGTGTACATAGGTTCATTTAACGACAAGCCCATTAGGGAGACAGTAGCTGGGCCA 146 ************************************************************ consensus_6330#0 CTGGGTAAAGAACTGTTTGAGAAAGAACAAGAAGACCTGCTCTCCGACCTGAATGACATT 1380 consensus_6330#1 CTGGGTAAAGAACTGTNTGAGAAAGAACAAGAAGACCTGCTCTCCGACCTGAATGACATT 206 **************** ******************************************* consensus_6330#0 CCAAAGAAAGCCTGTGACCGTCGAATCAACGAATTCGTGAAGCGTTCGAGGTCAGCCAAG 1440 consensus_6330#1 CCAAAGAAAGCCTGTGACCGTCGAATCAACGAATTCGCGAAGCGTTCGAGGTCAGCCAAG 266 ************************************* ********************** consensus_6330#0 GTCCATGCTCACATAATCAGCCACCTGAAGAAGGAGATGCCGGCGCTGATGGGCAAGGCC 1500 consensus_6330#1 GTCCATGCTCACATAATCAGCCACCTGAAGAAGGAGATGCCGGCGCTGATGGGCAAGGCC 326 ************************************************************ consensus_6330#0 AAGGCGCAGCAGCGGCTGCTCGACACCCTCGACGAGCAGTTCGCCAAGGTTCAGAAGGAG 1560 consensus_6330#1 AAGGCGCAGCAGCGGCTGCTCGACACCCTCGACGAGCAGTTCGCCAAGGTTCAGAAGGAG 386 ************************************************************ consensus_6330#0 CTGCACTTGCCGGCCGGCGACTTCCCCAGCGTGGATGAGTACAGGGAGACACTGAGCGCC 1620 consensus_6330#1 CTGCACTTGCCGGCCGGCGACTTCCCCAGCGTGGATGAGTACAGGGAGACACTGAGCGCC 446 ************************************************************ consensus_6330#0 TACAACTTCGACAAGTTCGAGAGGCTGAAGCCCAAGCTGGTGCAGGGCGTCGACGACATG 1680 consensus_6330#1 TACAACTTCGACAAGTTCGAGAGGCTGAAGCCCAAGCTGGTGCAGGGCGTCGACGACATG 506 ************************************************************ consensus_6330#0 CTCGCCTACGACATCCCCGATCTCCTCAAGAGCTTCAGGAACCCCTACGAATGAATGAGC 1740 consensus_6330#1 CTCGCCTACGACATCCCCGATCTCCTCAAGAGCTTCAGGAACCCCTACGAATGAATGAGC 566 ************************************************************ consensus_6330#0 AAGCAGCAGCAGTCAGAGAAGGCGTGTTCGACCACAATACAAGCATGGATCTTTCTTGTT 1800 consensus_6330#1 AAGCAGCAGCAGTCAGAGAAGGCGTGTTCGACCACAATACAAGCATGGATCTTTCTTGTT 626 ************************************************************ consensus_6330#0 CACAAAAAAAGAATGTGATCCGTGAATCGTCAATCCATCTCTTTTGTGCTCCACGAAGGC 1860 consensus_6330#1 CACAAAAAAAGGATGTGATCCGTGAATCGTCAATCCATCTCTTTTGTGCTCCAAAAAAAA 686 *********** ***************************************** ** consensus_6330#0 GCGATATATGGCTTTTTGTTGGCGATTTTCTTCAGTCTTCTGCAGTGATCTCTGAAGAAG 1920 consensus_6330#1 AAAAAAAAAAAAAAAAAAAAAAAAAA---------------------------------- 712 * * * * consensus_6330#0 GCAGTGTGACAGGAATGTGCAAAGTGAAGCCGATTGGAAAGTTTGGAACAGCGTTAAACT 1980 consensus_6330#1 ------------------------------------------------------------ consensus_6330#0 G 1981 consensus_6330#1 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||