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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6330#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1981 fasta sequence
[ATCGGGGCATTCGCCAGCCACACCTCTCTCCATCCTCTCGTTCTCTCTCTGTCTCCTCTTCTCTCTCCCCCGACGGAGAGGAGAGAAGGCGAGGAGCCGGGGGAGATGGGATCGGACTCGCCGCCCAAGAAATGGGGCCTCAGGGAGCAGCGCGAAGCCTACCTCCGGTGGTTCTCCCTCGCCGACGACGATGGAGATGGGCGCGTGACGGGGAAAGACGCGCTCAAGTTCTTCGCCATGTCGAATCTCTCCCGCCCCGAGCTGAAGCAGGTCTGGGCAATCGCTGATTCCAAGCGTCAGGGTTATCTTGGATTCTCGGAGTTTATGACCGCAATGCAGCTGGTTTCTCTTGCACAAGCTGGGAATGAGATTAGTCAGGACACCCTTGCACATGCAGATTTGGAGACGTTGCTACCTCCGACAATGGAAGGTCTGGACAAAAAACTAAAAAATAATTCTATGAGCAAGAGCAACTCTGATATTGTCGTACGTCATCCGTCAGAATTGCCTGCATCAGCCAACTGGTTTAACTCCAAGTCAGGAAAGAAGATTCCTTTAAGATCAGTTACTTCGATCATCGATGGGTTAAAGAAATCTTACATTGAGAAGTTGAGGCCACTAGAAAAAACATATCAGTTCGATGACTTTGTTTCACCTTTGCTGACTAGCAGTGATTTCGATGCGAAGCCAATGGTCATGTTGCTGGGTCAGTATTCCACAGGAAAAACCACATTCATAAAGCATTTACTGAAGACAAATTATCCAGGTGCTCATATTGGTCCAGAGCCTACAACTGACAGATTTGTTGTTATTACTTCTGGACCTGATGAAAGATGCATCCCTGGAAACACAATTGCCGTGCAAGCAGACATGCCATATAGTGGCTTGTCATCTTTTGGGACAGCATTTCTATCAAAGTTTGAATGTTCTCAGATGCCTCATCCACTACTGGATCATATAACCTTTGTGGACACTCCTGGAGTTTTATCAGGGGAAAAGCAGCGAACACAGCGTAGCTAT-GACTTCACTGGAGTTACATCATGGTTTGCAGCCAAGTGTGACCTAATTCTTCTCCTATTTGATCCACATAAGCTTGACATCAGTGATGAGTTCAAGCGTGTAATTGGGTCACTCAAAGGGCATGATGATAAAATACGTATAGTTCTGAACAAAGCAGACCAAGTTGATGCACAACAACTCATGAGAGTCTATGGAGCACTGCTATGGTCGCTTGGGAAAGTTCTGGACACACCAGAAGTCATGCGTGTGTACATAGGTTCATTTAACGACAAGCCCATTAGGGAGACAGTAGCTGGGCCACTGGGTAAAGAACTGTTTGAGAAAGAACAAGAAGACCTGCTCTCCGACCTGAATGACATTCCAAAGAAAGCCTGTGACCGTCGAATCAACGAATTCGTGAAGCGTTCGAGGTCAGCCAAGGTCCATGCTCACATAATCAGCCACCTGAAGAAGGAGATGCCGGCGCTGATGGGCAAGGCCAAGGCGCAGCAGCGGCTGCTCGACACCCTCGACGAGCAGTTCGCCAAGGTTCAGAAGGAGCTGCACTTGCCGGCCGGCGACTTCCCCAGCGTGGATGAGTACAGGGAGACACTGAGCGCCTACAACTTCGACAAGTTCGAGAGGCTGAAGCCCAAGCTGGTGCAGGGCGTCGACGACATGCTCGCCTACGACATCCCCGATCTCCTCAAGAGCTTCAGGAACCCCTACGAATGAATGAGCAAGCAGCAGCAGTCAGAGAAGGCGTGTTCGACCACAATACAAGCATGGATCTTTCTTGTTCACAAAAAAAGAATGTGATCCGTGAATCGTCAATCCATCTCTTTTGTGCTCCACGAAGGCGCGATATATGGCTTTTTGTTGGCGATTTTCTTCAGTCTTCTGCAGTGATCTCTGAAGAAGGCAGTGTGACAGGAATGTGCAAAGTGAAGCCGATTGGAAAGTTTGGAACAGCGTTAAACTG]
[+] EMBL AK071148 [ATCGGGGCATTCGCCAGCCACACCTCTCTCCATCCTCTCGTTCTCTCTCTGTCTCCTCTTCTCTCTCCCCCGACGGAGAGGAGAGAAGGCGAGGAGCCGGGGGAGATGGGATCGGACTCGCCGCCCAAGAAATGGGGCCTCAGGGAGCAGCGCGAAGCCTACCTCCGGTGGTTCTCCCTCGCCGACGACGATGGAGATGGGCGCGTGACGGGGAAAGACGCGCTCAAGTTCTTCGCCATGTCGAATCTCTCCCGCCCCGAGCTGAAGCAGGTCTGGGCAATCGCTGATTCCAAGCGTCAGGGTTATCTTGGATTCTCGGAGTTTATGACCGCAATGCAGCTGGTTTCTCTTGCACAAGCTGGGAATGAGATTAGTCAGGACACCCTTGCACATGCAGATTTGGAGACGTTGCTACCTCCGACAATGGAAGGTCTGGACAAAAAACTAAAAAATAATTCTATGAGCAAGAGCAACTCTGATATTGTCGTACGTCATCCGTCAGAATTGCCTGCATCAGCCAACTGGTTTAACTCCAAGTCAGGAAAGAAGATTCCTTTAAGATCAGTTACTTCGATCATCGATGGGTTAAAGAAATCTTACATTGAGAAGTTGAGGCCACTAGAAAAAACATATCAGTTCGATGACTTTGTTTCACCTTTGCTGACTAGCAGTGATTTCGATGCGAAGCCAATGGTCATGTTGCTGGGTCAGTATTCCACAGGAAAAACCACATTCATAAAGCATTTACTGAAGACAAATTATCCAGGTGCTCATATTGGTCCAGAGCCTACAACTGACAGATTTGTTGTTATTACTTCTGGACCTGATGAAAGATGCATCCCTGGAAACACAATTGCCGTGCAAGCAGACATGCCATATAGTGGCTTGTCATCTTTTGGGACAGCATTTCTATCAAAGTTTGAATGTTCTCAGATGCCTCATCCACTACTGGATCATATAACCTTTGTGGACACTCCTGGAGTTTTATCAGGGGAAAAGCAGCGAACACAGCGTAGCTAT GACTTCACTGGAGTTACATCATGGTTTGCAGCCAAGTGTGACCTAATTCTTCTCCTATTTGATCCACATAAGCTTGACATCAGTGATGAGTTCAAGCGTGTAATTGGGTCACTCAAAGGGCATGATGATAAAATACGTATAGTTCTGAACAAAGCAGACCAAGTTGATGCACAACAACTCATGAGAGTCTATGGAGCACTGCTATGGTCGCTTGGGAAAGTTCTGGACACACCAGAAGTCATGCGTGTGTACATAGGTTCATTTAACGACAAGCCCATTAGGGAGACAGTAGCTGGGCCACTGGGTAAAGAACTGTTTGAGAAAGAACAAGAAGACCTGCTCTCCGACCTGAATGACATTCCAAAGAAAGCCTGTGACCGTCGAATCAACGAATTCGTGAAGCGTTCGAGGTCAGCCAAGGTCCATGCTCACATAATCAGCCACCTGAAGAAGGAGATGCCGGCGCTGATGGGCAAGGCCAAGGCGCAGCAGCGGCTGCTCGACACCCTCGACGAGCAGTTCGCCAAGGTTCAGAAGGAGCTGCACTTGCCGGCCGGCGACTTCCCCAGCGTGGATGAGTACAGGGAGACACTGAGCGCCTACAACTTCGACAAGTTCGAGAGGCTGAAGCCCAAGCTGGTGCAGGGCGTCGACGACATGCTCGCCTACGACATCCCCGATCTCCTCAAGAGCTTCAGGAACCCCTACGAATGAATGAGCAAGCAGCAGCAGTCAGAGAAGGCGTGTTCGACCACAATACAAGCATGGATCTTTCTTGTTCACAAAAAAAGAATGTGATCCGTGAATCGTCAATCCATCTCTTTTGTGCTCCACGAAGGCGCGATATATGGCTTTTTGTTGGCGATTTTCTTCAGTCTTCTGCAGTGATCTCTGAAGAAGGCAGTGTGACAGGAATGTGCAAAGTGAAGCCGATTGGAAAGTTTGGAACAGCGTTAAACTG]
[+] EMBL C98851 [ TTGCCGTGCAAGCAGACATGCCATATAGTGGCTTGTCATCTTTTGGGACAGCATTTCTATCAAAGTTTGAATGTTCTCAGATGCCTCATCCACTACTGGATCATATAACCTTTGTGGACACTCCTGGAGTTTTATCAGGGGAAAAGCAGCGAACACAGCGTA NTATGGACTTCACTGGAGTTACATCATGGTTTGCAGCCAAGTGTGACCTAATTCTTCTCCTATTTGATCCACATAAGCTTGACATCAGTGATGAGTTCAAGCGTGTAATTGGGNCACTCCAANGGCATGATGATAAAATACGTAT ]
consensusID : consensus_6330#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 712 fasta sequence
[GCAGACCAAGTTGATGCACAACAACTCATGAGAGTCTATGGAGCACTGCTATGGTCGCTGGGAAAGTTCTGAACACACCAGAAGTCATGCGTGTGTACATAGGTTCATTTAACGACAAGCCCATTAGGGAGACAGTAGCTGGGCCACTGGGTAAAGAACTGTNTGAGAAAGAACAAGAAGACCTGCTCTCCGACCTGAATGACATTCCAAAGAAAGCCTGTGACCGTCGAATCAACGAATTCGCGAAGCGTTCGAGGTCAGCCAAGGTCCATGCTCACATAATCAGCCACCTGAAGAAGGAGATGCCGGCGCTGATGGGCAAGGCCAAGGCGCAGCAGCGGCTGCTCGACACCCTCGACGAGCAGTTCGCCAAGGTTCAGAAGGAGCTGCACTTGCCGGCCGGCGACTTCCCCAGCGTGGATGAGTACAGGGAGACACTGAGCGCCTACAACTTCGACAAGTTCGAGAGGCTGAAGCCCAAGCTGGTGCAGGGCGTCGACGACATGCTCGCCTACGACATCCCCGATCTCCTCAAGAGCTTCAGGAACCCCTACGAATGAATGAGCAAGCAGCAGCAGTCAGAGAAGGCGTGTTCGACCACAATACAAGCATGGATCTTTCTTGTTCACAAAAAAAGGATGTGATCCGTGAATCGTCAATCCATCTCTTTTGTGCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA762617 [GCAGACCAAGTTGATGCACAACAACTCATGAGAGTCTATGGAGCACTGCTATGGTCGCTGGGAAAGTTCTGAACACACCAGAAGTCATGCGTGTGTACATAGGTTCATTTAACGACAAGCCCATTAGGGAGACAGTAGCTGGGCCACTGGGTAAAGAACTGTNTGAGAAAGAACAAGAAGACCTGCTCTCCGACCTGAATGACATTCCAAAGAAAGCCTGTGACCGTCGAATCAACGAATTCGCGAAGCGTTCGAGGTCAGCCAAGGTCCATGCTCACATAATCAGCCACCTGAAGAAGGAGATGCCGGCGCTGATGGGCAAGGCCAAGGCGCAGCAGCGGCTGCTCGACACCCTCGACGAGCAGTTCGCCAAGGTTCAGAAGGAGCTGCACTTGCCGGCCGGCGACTTCCCCAGCGTGGATGAGTACAGGGAGACACTGAGCGCCTACAACTTCGACAAGTTCGAGAGGCTGAAGCCCAAGCTGGTGCAGGGCGTCGACGACATGCTCGCCTACGACATCCCCGATCTCCTCAAGAGCTTCAGGAACCCCTACGAATGAATGAGCAAGCAGCAGCAGTCAGAGAAGGCGTGTTCGACCACAATACAAGCATGGATCTTTCTTGTTCACAAAAAAAGGATGTGATCCGTGAATCGTCAATCCATCTCTTTTGTGCTCCAAAAAAAAAAAAA ]
[+] EMBL C98852 [ GAAGGAGNTGCANTTGCCGGCCGGCGACTTCCCCAGCGTGGATGAGTACAGGGAGACACTGAGCGCCTACAACTTCGACAAGTTCGAGA GCTGAAGCCCAAGCTGGTGCAGGGCGTCGACGACATGCTCGCCTACGACATCCCCGATCTCCTCAAGAGCTTCAGGAACCCCTACGAATGAATGAGCAAGCAGCAGCAGTCAGAGAAGGCGTGTTCGACCACAATACAAGCATGGATCTTTCTTGTTCACAAAAAAAGAATGTGATCCGTGAATCGTCAATCCATCTCTTTTGTGCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6330#0 ATCGGGGCATTCGCCAGCCACACCTCTCTCCATCCTCTCGTTCTCTCTCTGTCTCCTCTT 60
consensus_6330#1 ------------------------------------------------------------
consensus_6330#0 CTCTCTCCCCCGACGGAGAGGAGAGAAGGCGAGGAGCCGGGGGAGATGGGATCGGACTCG 120
consensus_6330#1 ------------------------------------------------------------
consensus_6330#0 CCGCCCAAGAAATGGGGCCTCAGGGAGCAGCGCGAAGCCTACCTCCGGTGGTTCTCCCTC 180
consensus_6330#1 ------------------------------------------------------------
consensus_6330#0 GCCGACGACGATGGAGATGGGCGCGTGACGGGGAAAGACGCGCTCAAGTTCTTCGCCATG 240
consensus_6330#1 ------------------------------------------------------------
consensus_6330#0 TCGAATCTCTCCCGCCCCGAGCTGAAGCAGGTCTGGGCAATCGCTGATTCCAAGCGTCAG 300
consensus_6330#1 ------------------------------------------------------------
consensus_6330#0 GGTTATCTTGGATTCTCGGAGTTTATGACCGCAATGCAGCTGGTTTCTCTTGCACAAGCT 360
consensus_6330#1 ------------------------------------------------------------
consensus_6330#0 GGGAATGAGATTAGTCAGGACACCCTTGCACATGCAGATTTGGAGACGTTGCTACCTCCG 420
consensus_6330#1 ------------------------------------------------------------
consensus_6330#0 ACAATGGAAGGTCTGGACAAAAAACTAAAAAATAATTCTATGAGCAAGAGCAACTCTGAT 480
consensus_6330#1 ------------------------------------------------------------
consensus_6330#0 ATTGTCGTACGTCATCCGTCAGAATTGCCTGCATCAGCCAACTGGTTTAACTCCAAGTCA 540
consensus_6330#1 ------------------------------------------------------------
consensus_6330#0 GGAAAGAAGATTCCTTTAAGATCAGTTACTTCGATCATCGATGGGTTAAAGAAATCTTAC 600
consensus_6330#1 ------------------------------------------------------------
consensus_6330#0 ATTGAGAAGTTGAGGCCACTAGAAAAAACATATCAGTTCGATGACTTTGTTTCACCTTTG 660
consensus_6330#1 ------------------------------------------------------------
consensus_6330#0 CTGACTAGCAGTGATTTCGATGCGAAGCCAATGGTCATGTTGCTGGGTCAGTATTCCACA 720
consensus_6330#1 ------------------------------------------------------------
consensus_6330#0 GGAAAAACCACATTCATAAAGCATTTACTGAAGACAAATTATCCAGGTGCTCATATTGGT 780
consensus_6330#1 ------------------------------------------------------------
consensus_6330#0 CCAGAGCCTACAACTGACAGATTTGTTGTTATTACTTCTGGACCTGATGAAAGATGCATC 840
consensus_6330#1 ------------------------------------------------------------
consensus_6330#0 CCTGGAAACACAATTGCCGTGCAAGCAGACATGCCATATAGTGGCTTGTCATCTTTTGGG 900
consensus_6330#1 ------------------------------------------------------------
consensus_6330#0 ACAGCATTTCTATCAAAGTTTGAATGTTCTCAGATGCCTCATCCACTACTGGATCATATA 960
consensus_6330#1 ------------------------------------------------------------
consensus_6330#0 ACCTTTGTGGACACTCCTGGAGTTTTATCAGGGGAAAAGCAGCGAACACAGCGTAGCTAT 1020
consensus_6330#1 ------------------------------------------------------------
consensus_6330#0 GACTTCACTGGAGTTACATCATGGTTTGCAGCCAAGTGTGACCTAATTCTTCTCCTATTT 1080
consensus_6330#1 ------------------------------------------------------------
consensus_6330#0 GATCCACATAAGCTTGACATCAGTGATGAGTTCAAGCGTGTAATTGGGTCACTCAAAGGG 1140
consensus_6330#1 ------------------------------------------------------------
consensus_6330#0 CATGATGATAAAATACGTATAGTTCTGAACAAAGCAGACCAAGTTGATGCACAACAACTC 1200
consensus_6330#1 ---------------------------------GCAGACCAAGTTGATGCACAACAACTC 27
***************************
consensus_6330#0 ATGAGAGTCTATGGAGCACTGCTATGGTCGCTTGGGAAAGTTCTGGACACACCAGAAGTC 1260
consensus_6330#1 ATGAGAGTCTATGGAGCACTGCTATGGTCGCT-GGGAAAGTTCTGAACACACCAGAAGTC 86
******************************** ************ **************
consensus_6330#0 ATGCGTGTGTACATAGGTTCATTTAACGACAAGCCCATTAGGGAGACAGTAGCTGGGCCA 1320
consensus_6330#1 ATGCGTGTGTACATAGGTTCATTTAACGACAAGCCCATTAGGGAGACAGTAGCTGGGCCA 146
************************************************************
consensus_6330#0 CTGGGTAAAGAACTGTTTGAGAAAGAACAAGAAGACCTGCTCTCCGACCTGAATGACATT 1380
consensus_6330#1 CTGGGTAAAGAACTGTNTGAGAAAGAACAAGAAGACCTGCTCTCCGACCTGAATGACATT 206
**************** *******************************************
consensus_6330#0 CCAAAGAAAGCCTGTGACCGTCGAATCAACGAATTCGTGAAGCGTTCGAGGTCAGCCAAG 1440
consensus_6330#1 CCAAAGAAAGCCTGTGACCGTCGAATCAACGAATTCGCGAAGCGTTCGAGGTCAGCCAAG 266
************************************* **********************
consensus_6330#0 GTCCATGCTCACATAATCAGCCACCTGAAGAAGGAGATGCCGGCGCTGATGGGCAAGGCC 1500
consensus_6330#1 GTCCATGCTCACATAATCAGCCACCTGAAGAAGGAGATGCCGGCGCTGATGGGCAAGGCC 326
************************************************************
consensus_6330#0 AAGGCGCAGCAGCGGCTGCTCGACACCCTCGACGAGCAGTTCGCCAAGGTTCAGAAGGAG 1560
consensus_6330#1 AAGGCGCAGCAGCGGCTGCTCGACACCCTCGACGAGCAGTTCGCCAAGGTTCAGAAGGAG 386
************************************************************
consensus_6330#0 CTGCACTTGCCGGCCGGCGACTTCCCCAGCGTGGATGAGTACAGGGAGACACTGAGCGCC 1620
consensus_6330#1 CTGCACTTGCCGGCCGGCGACTTCCCCAGCGTGGATGAGTACAGGGAGACACTGAGCGCC 446
************************************************************
consensus_6330#0 TACAACTTCGACAAGTTCGAGAGGCTGAAGCCCAAGCTGGTGCAGGGCGTCGACGACATG 1680
consensus_6330#1 TACAACTTCGACAAGTTCGAGAGGCTGAAGCCCAAGCTGGTGCAGGGCGTCGACGACATG 506
************************************************************
consensus_6330#0 CTCGCCTACGACATCCCCGATCTCCTCAAGAGCTTCAGGAACCCCTACGAATGAATGAGC 1740
consensus_6330#1 CTCGCCTACGACATCCCCGATCTCCTCAAGAGCTTCAGGAACCCCTACGAATGAATGAGC 566
************************************************************
consensus_6330#0 AAGCAGCAGCAGTCAGAGAAGGCGTGTTCGACCACAATACAAGCATGGATCTTTCTTGTT 1800
consensus_6330#1 AAGCAGCAGCAGTCAGAGAAGGCGTGTTCGACCACAATACAAGCATGGATCTTTCTTGTT 626
************************************************************
consensus_6330#0 CACAAAAAAAGAATGTGATCCGTGAATCGTCAATCCATCTCTTTTGTGCTCCACGAAGGC 1860
consensus_6330#1 CACAAAAAAAGGATGTGATCCGTGAATCGTCAATCCATCTCTTTTGTGCTCCAAAAAAAA 686
*********** ***************************************** **
consensus_6330#0 GCGATATATGGCTTTTTGTTGGCGATTTTCTTCAGTCTTCTGCAGTGATCTCTGAAGAAG 1920
consensus_6330#1 AAAAAAAAAAAAAAAAAAAAAAAAAA---------------------------------- 712
* * * *
consensus_6330#0 GCAGTGTGACAGGAATGTGCAAAGTGAAGCCGATTGGAAAGTTTGGAACAGCGTTAAACT 1980
consensus_6330#1 ------------------------------------------------------------
consensus_6330#0 G 1981
consensus_6330#1 -
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||