cluster # 6333

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Oryza sativa
cluster # 6333 cluster # 6333 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6333#0 length = 551 sequences # 2

consensus_6333#1 length = 525 sequences # 1
consensus_6333#2 length = 351 sequences # 1

consensusID : consensus_6333#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 551
fasta sequence

                              [GCCTCCAAGGGGGTCGGCGCATGGCAAGCAGAGGGGAGAAATTCGACATATGAGGCCTTACAGCGTTGGCAACTACTGCTGCGATGGCGATGGCACGATGATGACCGAGGCAAAGAACACATCGAAGACTACGAGGCAGCCGAGCAGCAGGCTGACGACGACACCG-GCGCCGCCGCCGCGGAGGACGGTGGCGGCGGCGGACGAGCTGGTGGCGCTGGCGCGCTCGAACTGCAGCGAGTCGACGGCGAGCGGCATGTTCTCCTGGTCCGGGCTGCACCGCGGCGGCGCGCCGCCGGCCGCCGCCGACTCGGTGGGGCGCGCGCTGTAGAGCATGGCGCGCAGCACGGCGGACACGG-TGGNGGATGTACACCGTCTTGTTCTTGGCCAGCAGCCACGTCAGCCCCATCAGCTGGCAGTCGCGCCCCAGCATCCGCCGCGCCCGGTCGCCGCCGGCGACCTCCCGGCTCACGTTCCCCTTCAGCTGCACCACCACAAGAACACAGGTGAGACGAAGAAGAAACTGCATTTAATGTGCTCCATGCAAGCAACGT]

[+] EMBL CF325163             [GCCTCCAAGGGGGTCGGCGCATGGCAAGCAGAGGGGAGAAATTCGACATATGAGGCCTTACAGCGTTGGCAACTACTGCTGCGATGGCGATGGCACGATGATGACCGAGGCAAAGAACACATCGAAGACTACGAGGCAGCCGAGCAGCAGGCTGACGACGACACCG GCGCCGCCGCCGCGGAGGACGGTGGCGGCGGCGGACGAGCTGGTGGCGCTGGCGCGCTCGAACTGCAGCGAGTCGACGGCGAGCGGCATGTTCTCCTGGTCCGGGCTGCACCGCGGCGGCGCGCCGCCGGCCGCCGCCGACTCGGTGGGGCGCGCGCTGTAGAGCATGGCGCGCAGCACGGCGGACACGG TGGNGGATGTACACCGTCTTGTTCTTGGCCAGCAGCCACGTCAGCCCCATCAGCTGGCAGTCGCGCCCCAGCATCCGCCGCGCCCGGTCGCCGCCGGCGACCTCCCGGCTCACGTTCCCCTTCAGCTGCACCACCACAAGAACACAGGTGAGACGAAGAAGAAACTGCATTTAATGTGCTCCATGCAAGCAACGT]
[+] EMBL CF325138             [GCCTCCAAGGGGGTCGGCGCATGGCAAGCAGAGGGGAGAAATTCGACATATGAGGCCTTACAGCGTTGGCAACTACTGCTGCGATGGCGATGGCACGATGATGACCGAGGCAAAGAACACATCGAAGACTACGAGGCAGCCGAGCAGCAGGCTGACGACGACACCGNGCGCCGCCGCCGCGGAGGACGGTGGCGGCGGCGGACGAGCTGGTGGCGCTGGCGCGCTCGAACTGCAGCGAGTCGACGGCGAGCGGCATGTTCTCCTGGTCCGGGCTGANCCGCGGCGGCGCGCCGCCGGCCGCCGCCGACTCGGTGGGGCGCGCGCTGTAGAGCATGGCGCGCAGCACGGCGGACACGGNTGG GGATGTACACCGTCTTGTTCTTGGCCAGCAGCCACGTCAGCCCCATCAGCTGGCAGTCGCGCCCCAGCATCCGCCGCGCCCGGTCGCCGCCGGCGACCTCCCGGCTCACGTTCCCCTTCAGCTGCACCACCACAAGAACACAGGTGAGACGAAGAAGAAACTGCATTTAATGTGCTCCATGCAAGCA    ]




>consensus_6333#0
GCCTCCAAGGGGGTCGGCGCATGGCAAGCAGAGGGGAGAAATTCGACATATGAGGCCTTA
CAGCGTTGGCAACTACTGCTGCGATGGCGATGGCACGATGATGACCGAGGCAAAGAACAC
ATCGAAGACTACGAGGCAGCCGAGCAGCAGGCTGACGACGACACCGGCGCCGCCGCCGCG
GAGGACGGTGGCGGCGGCGGACGAGCTGGTGGCGCTGGCGCGCTCGAACTGCAGCGAGTC
GACGGCGAGCGGCATGTTCTCCTGGTCCGGGCTGCACCGCGGCGGCGCGCCGCCGGCCGC
CGCCGACTCGGTGGGGCGCGCGCTGTAGAGCATGGCGCGCAGCACGGCGGACACGGTGGN
GGATGTACACCGTCTTGTTCTTGGCCAGCAGCCACGTCAGCCCCATCAGCTGGCAGTCGC
GCCCCAGCATCCGCCGCGCCCGGTCGCCGCCGGCGACCTCCCGGCTCACGTTCCCCTTCA
GCTGCACCACCACAAGAACACAGGTGAGACGAAGAAGAAACTGCATTTAATGTGCTCCAT
GCAAGCAACGT

consensusID : consensus_6333#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 525
fasta sequence

                              [GAGACGCATAAACACTGCAAATCACATCTCACTCTAATCCGCAGGTCACTAATACTATGCAACAGAAGCTACTAATTAACTAACAACGCCTACAAAATTAAACACTATCGATTATCGACAAGGCTTAGGTTCTTAAATTAATCAGTTGCCACCCTTAATTTACAAGAACACATCGAAGACTACGAGGCAGCCGAGCAGCAGGCTGACGACGACACCGGCGCCGCCGCCGCGGAGGACGGTGGCGGCGGCGGACGAGCTGGTGGCGCTGGCGCGCTCGAACTGCAGCGAGTCGACGGCGAGCGGCATGTTCTCCTGGTCCGGGCTGCACCGCGGGGGCGCCGACGGCGCGCCGACTCGGTGGGGCGCGCGCTGTAAAGCATGGCGCGCAGCACAGGCGGANCACGGNTGGGGATGTACACCGTCTTGTTCTGTGGCCAGCAGCCACCGTCAGCACCCATCAGCTGGACAGTCAGAGCCCCAAACATCCGNCGAGCCCGGTCGCCGCGGANANACTCCCGGATCACG]

[-] EMBL BI805840             [GAGACGCATAAACACTGCAAATCACATCTCACTCTAATCCGCAGGTCACTAATACTATGCAACAGAAGCTACTAATTAACTAACAACGCCTACAAAATTAAACACTATCGATTATCGACAAGGCTTAGGTTCTTAAATTAATCAGTTGCCACCCTTAATTTACAAGAACACATCGAAGACTACGAGGCAGCCGAGCAGCAGGCTGACGACGACACCGGCGCCGCCGCCGCGGAGGACGGTGGCGGCGGCGGACGAGCTGGTGGCGCTGGCGCGCTCGAACTGCAGCGAGTCGACGGCGAGCGGCATGTTCTCCTGGTCCGGGCTGCACCGCGGGGGCGCCGACGGCGCGCCGACTCGGTGGGGCGCGCGCTGTAAAGCATGGCGCGCAGCACAGGCGGANCACGGNTGGGGATGTACACCGTCTTGTTCTGTGGCCAGCAGCCACCGTCAGCACCCATCAGCTGGACAGTCAGAGCCCCAAACATCCGNCGAGCCCGGTCGCCGCGGANANACTCCCGGATCACG]




>consensus_6333#1
GAGACGCATAAACACTGCAAATCACATCTCACTCTAATCCGCAGGTCACTAATACTATGC
AACAGAAGCTACTAATTAACTAACAACGCCTACAAAATTAAACACTATCGATTATCGACA
AGGCTTAGGTTCTTAAATTAATCAGTTGCCACCCTTAATTTACAAGAACACATCGAAGAC
TACGAGGCAGCCGAGCAGCAGGCTGACGACGACACCGGCGCCGCCGCCGCGGAGGACGGT
GGCGGCGGCGGACGAGCTGGTGGCGCTGGCGCGCTCGAACTGCAGCGAGTCGACGGCGAG
CGGCATGTTCTCCTGGTCCGGGCTGCACCGCGGGGGCGCCGACGGCGCGCCGACTCGGTG
GGGCGCGCGCTGTAAAGCATGGCGCGCAGCACAGGCGGANCACGGNTGGGGATGTACACC
GTCTTGTTCTGTGGCCAGCAGCCACCGTCAGCACCCATCAGCTGGACAGTCAGAGCCCCA
AACATCCGNCGAGCCCGGTCGCCGCGGANANACTCCCGGATCACG

consensusID : consensus_6333#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 351
fasta sequence

                              [TTTTTTTTTTTTTATCGACAAGGCTTAGGTTCTTAAATTAATCAGTTCCACCCTTAATTTACAAGAACACATCGAAGACTACGAGCAACCGAGCAGCAGGCTGACGACGACACCGCGCCGCCGCCGCGGAGGACGGTGNCGNCGGCGGACGAGCTTGGCTGNTGGCGCGCTCGAACTGCAGCGAGTCGACGGCGAGCGGCATGTTCTCCTGGTCCGGGCTGCNANCCGGCGGCGCGCCGCCGGCCGCCGCCGACTCGGTGGGGCGCGCGCTGTAGAGCATGGCGCGCAGCACGGCGGACACGGTGGGGATGTACACCGTCTTGTTCTTGGCCAGCAGCCACGTCAGCCCCA]

[-] EMBL AU162252             [TTTTTTTTTTTTTATCGACAAGGCTTAGGTTCTTAAATTAATCAGTTCCACCCTTAATTTACAAGAACACATCGAAGACTACGAGCAACCGAGCAGCAGGCTGACGACGACACCGCGCCGCCGCCGCGGAGGACGGTGNCGNCGGCGGACGAGCTTGGCTGNTGGCGCGCTCGAACTGCAGCGAGTCGACGGCGAGCGGCATGTTCTCCTGGTCCGGGCTGCNANCCGGCGGCGCGCCGCCGGCCGCCGCCGACTCGGTGGGGCGCGCGCTGTAGAGCATGGCGCGCAGCACGGCGGACACGGTGGGGATGTACACCGTCTTGTTCTTGGCCAGCAGCCACGTCAGCCCCA]




>consensus_6333#2
TTTTTTTTTTTTTATCGACAAGGCTTAGGTTCTTAAATTAATCAGTTCCACCCTTAATTT
ACAAGAACACATCGAAGACTACGAGCAACCGAGCAGCAGGCTGACGACGACACCGCGCCG
CCGCCGCGGAGGACGGTGNCGNCGGCGGACGAGCTTGGCTGNTGGCGCGCTCGAACTGCA
GCGAGTCGACGGCGAGCGGCATGTTCTCCTGGTCCGGGCTGCNANCCGGCGGCGCGCCGC
CGGCCGCCGCCGACTCGGTGGGGCGCGCGCTGTAGAGCATGGCGCGCAGCACGGCGGACA
CGGTGGGGATGTACACCGTCTTGTTCTTGGCCAGCAGCCACGTCAGCCCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6333#1      GAGACGCATAAACACTGCAAATCACATCTCACTCTAATCCGCAGGTCACTAATACTATGC 60
consensus_6333#2      ------------------------------------------------------------
consensus_6333#0      -----------------------------------GCCTCCAAGGGGGTCGGCGCATGGC 25
                                                                                  

consensus_6333#1      AA-CAGAAGCTACTAATT-AACTAACAACGCCT-ACAAAATTAAACACTATCGATTATCG 117
consensus_6333#2      -------------------------------------------TTTTTTTTTTTTTATCG 17
consensus_6333#0      AAGCAGAGGGGAGAAATTCGACATATGAGGCCTTACAGCGTTGGCAACTA----CTGCTG 81
                                                                      *      *   *

consensus_6333#1      ACAAGGCTTAGGTTCTTAAATTAATCAGTTGCCACCCTTAATTTACAAGAACACATCGAA 177
consensus_6333#2      ACAAGGCTTAGGTTCTTAAATTAATCAGTT-CCACCCTTAATTTACAAGAACACATCGAA 76
consensus_6333#0      CGATGGCGATGGCACGATGATGACCGAGGC---------------AAAGAACACATCGAA 126
                        * ***   **  *    ** *   **                  **************

consensus_6333#1      GACTACGAGGCAGCCGAGCAGCAGGCTGACGACGACACCGGCGCCGCCGCCGCGGAGGAC 237
consensus_6333#2      GACTACGAG-CAACCGAGCAGCAGGCTGACGACGACACCG-CGCCGCCGCCGCGGAGGAC 134
consensus_6333#0      GACTACGAGGCAGCCGAGCAGCAGGCTGACGACGACACCGGCGCCGCCGCCGCGGAGGAC 186
                      ********* ** *************************** *******************

consensus_6333#1      GGTGGCGGCGGCGGACGAGCTGGTGGCGCTGGCGCGCTCGAACTGCAGCGAGTCGACGGC 297
consensus_6333#2      GGTGNCGNCGGCGGACGAGCTTG-GCTGNTGGCGCGCTCGAACTGCAGCGAGTCGACGGC 193
consensus_6333#0      GGTGGCGGCGGCGGACGAGCTGGTGGCGCTGGCGCGCTCGAACTGCAGCGAGTCGACGGC 246
                      **** ** ************* * *  * *******************************

consensus_6333#1      GAGCGGCATGTTCTCCTGGTCCGGGCTGC--ACCGCGGGGGCGCCGACGGC--GCGCCGA 353
consensus_6333#2      GAGCGGCATGTTCTCCTGGTCCGGGCTGCNANCCGGCGGCGCGCCGCCGGCCGCCGCCGA 253
consensus_6333#0      GAGCGGCATGTTCTCCTGGTCCGGGCTGCACCGCGGCGGCGCGCCGCCGGCCGCCGCCGA 306
                      *****************************    **  ** ****** ****   ******

consensus_6333#1      CTCGGTGGGGCGCGCGCTGTAAAGCATGGCGCGCAGCACAGGCGGANCACGGNTGGGGAT 413
consensus_6333#2      CTCGGTGGGGCGCGCGCTGTAGAGCATGGCGCGCAGCAC-GGCGGAC-ACGGT-GGGGAT 310
consensus_6333#0      CTCGGTGGGGCGCGCGCTGTAGAGCATGGCGCGCAGCAC-GGCGGAC-ACGGTGGNGGAT 364
                      ********************* ***************** ******  ****  * ****

consensus_6333#1      GTACACCGTCTTGTTCTGTGGCCAGCAGCCACCGTCAGCACCCATCAGCTGGACAGTCAG 473
consensus_6333#2      GTACACCGTCTTGTTCT-TGGCCAGCAGCCAC-GTCAGC-CCCA---------------- 351
consensus_6333#0      GTACACCGTCTTGTTCT-TGGCCAGCAGCCAC-GTCAGC-CCCATCAGCTGG-CAGTC-G 419
                      ***************** ************** ****** ****                

consensus_6333#1      AGCCCCAAACATCCGNCGAGCCCGGTCGCCGCGGANANACTCCCGGATCACG-------- 525
consensus_6333#2      ------------------------------------------------------------
consensus_6333#0      CGCCCCAG-CATCCGCCGCGCCCGGTCGCCGCCGGCGACCTCCCGGCTCACGTTCCCCTT 478
                                                                                  

consensus_6333#1      ------------------------------------------------------------
consensus_6333#2      ------------------------------------------------------------
consensus_6333#0      CAGCTGCACCACCACAAGAACACAGGTGAGACGAAGAAGAAACTGCATTTAATGTGCTCC 538
                                                                                  

consensus_6333#1      -------------
consensus_6333#2      -------------
consensus_6333#0      ATGCAAGCAACGT 551