cluster # 6336

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Oryza sativa
cluster # 6336 cluster # 6336 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6336#0 length = 552 sequences # 3

consensus_6336#1 length = 255 sequences # 1

consensusID : consensus_6336#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 552
fasta sequence

                              [CGCGAGACGAGGAGAGAGGAGAAGAGATTCCGTAGCGTAGGCGAGAGGCGGCGGCGGAGGCGGAGGAGAGGAGGAGCGGCGGCGGCGGCGGCGATGGCGAGGAGCGACAGCTGCTTGGCGCGCGTCGGCGCCGGGGTCGCCATCGGCGGCGCGGTCGGCGGGGCCGTCGGTGCTGTCTATGGGACTTATGAGGCTATCAGATACAAGGTCCCTGGCTTGCTGAAGATCAGATACATTGGACAGACCACCGTTGGTAGTGCTGCAATATTTGGACTTTTCCTGGGAGCCGGGAGCTTGATACACTGTGGAAAATCATATTAGTTAGCATTCTAAGTTTTGAACTCTACCCTTGTCCGTTGGGCCTCAAAGGATCGACCAAGTGAACATTTATTTGATCTTTATGTAAAAGATTACTAATACCTGGTGGCTTGGGTTGGAAAGGACAATCAGATTCTTCTGTTATCATGTGTTGCTCTTCCTTTTGGTGTGGAAATAAAATTTGTTCATCTGTATGAGGGATGCTGATGGTTGAAGCAGCNCCGGTGAAAAAAN]

[+] EMBL AK070942             [CGCGAGACGAGGAGAGAGGAGAAGAGATTCCGTAGCGTAGGCGAGAGGCGGCGGCGGAGGCGGAGGAGAGGAGGAGCGGCGGCGGCGGCGGCGATGGCGAGGAGCGACAGCTGCTTGGCGCGCGTCGGCGCCGGGGTCGCCATCGGCGGCGCGGTCGGCGGGGCCGTCGGTGCTGTCTATGGGACTTATGAGGCTATCAGATACAAGGTCCCTGGCTTGCTGAAGATCAGATACATTGGACAGACCACCGTTGGTAGTGCTGCAATATTTGGACTTTTCCTGGGAGCCGGGAGCTTGATACACTGTGGAAAATCATATTAGTTAGCATTCTAAGTTTTGAACTCTACCCTTGTCCGTTGGGCCTCAAAGGATCGACCAAGTGAACATTTATTTGATCTTTATGTAAAAGATTACTAATACCTGGTGGCTTGG                                                                                                                        ]
[+] EMBL OS0378A              [                          ATTCCGTAGCGTAGGCGAGAGGCGGCGGCGGAGGCGGAGGAGAGGAGGAGCGGCGGCGGCGGCGGCGATGGCGAGGAGCGACA CTGCTTGGCGCGCGTCGGCG CGGGGTCGCCATCGG GGCGCGGTCGGCGGGGCCGTCGGTGCTGTCTATGGGACTTATGAGGCTATCAGATACAAGGTCCCTGGCTTGCTGAAGATCAGATACATTGGACAGACCACCGTTGGTAGTGCTGCAATATTTGGACTTTTCCTGGGAGCCGGGAGCTTGATACACTGTGGAAAATCATATTAGTTAGCATTCTAAGTTTTGAACTCTACCCTTGT                                                                                                                                                                                                       ]
[+] EMBL C98016               [                                                                                                                                                                               TCTATGGGACTTNTGAGGCTATCANATACAAGGTCCCTGGCTTGCTGAAGATCAGATACATTGGACAGACCACCGTTGGTAGTGCTGCAATATTTGGACTTTTCCTGGGANCCGGGAGCTTGATACACTGTGGAAAATCATATTAGTTAGCATTCTAAGTTTTGAANTCTACCCTTGTCCGTTGGGCNTCAAAGGATCGACCAAGTGAACATTTATTTGATCTTTATGTAAAAGATTACTAATACCTGGTGGCTTGGGTTGGAAAGGACAATCAGATTCTTCTGTTATCATGTGTTGCTCTTCCTTTTGGTGTGGAAATAAAATTTGTTCATCTGTATGAGGGATGCTGATGGTTGAAGCAGCNCCGGTGAAAAAAN]




>consensus_6336#0
CGCGAGACGAGGAGAGAGGAGAAGAGATTCCGTAGCGTAGGCGAGAGGCGGCGGCGGAGG
CGGAGGAGAGGAGGAGCGGCGGCGGCGGCGGCGATGGCGAGGAGCGACAGCTGCTTGGCG
CGCGTCGGCGCCGGGGTCGCCATCGGCGGCGCGGTCGGCGGGGCCGTCGGTGCTGTCTAT
GGGACTTATGAGGCTATCAGATACAAGGTCCCTGGCTTGCTGAAGATCAGATACATTGGA
CAGACCACCGTTGGTAGTGCTGCAATATTTGGACTTTTCCTGGGAGCCGGGAGCTTGATA
CACTGTGGAAAATCATATTAGTTAGCATTCTAAGTTTTGAACTCTACCCTTGTCCGTTGG
GCCTCAAAGGATCGACCAAGTGAACATTTATTTGATCTTTATGTAAAAGATTACTAATAC
CTGGTGGCTTGGGTTGGAAAGGACAATCAGATTCTTCTGTTATCATGTGTTGCTCTTCCT
TTTGGTGTGGAAATAAAATTTGTTCATCTGTATGAGGGATGCTGATGGTTGAAGCAGCNC
CGGTGAAAAAAN

consensusID : consensus_6336#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 255
fasta sequence

                              [AGAGGACGAGACAAGGGGGGACAGACCACCGTTGGTAGTGCTGCAATATTTGGACTTTTCCTGGGAGCCGGGAGCTTGATACACTGTGGACTAATCATATTAGTTAGCATTCTAAGTTTTGAACTCTACCCTTGTCCGTTGGGCCTCAAAGGATCGACCAAGTGAACATTTATTTGATCTTTATGTAAAAGATTACTAATACCTGGTGGCTTGGGTTGGAAAGGACAATCAGATTCTTCTGTTAAAAAAAAAAAA]

[-] EMBL CA763663             [AGAGGACGAGACAAGGGGGGACAGACCACCGTTGGTAGTGCTGCAATATTTGGACTTTTCCTGGGAGCCGGGAGCTTGATACACTGTGGACTAATCATATTAGTTAGCATTCTAAGTTTTGAACTCTACCCTTGTCCGTTGGGCCTCAAAGGATCGACCAAGTGAACATTTATTTGATCTTTATGTAAAAGATTACTAATACCTGGTGGCTTGGGTTGGAAAGGACAATCAGATTCTTCTGTTAAAAAAAAAAAA]




>consensus_6336#1
AGAGGACGAGACAAGGGGGGACAGACCACCGTTGGTAGTGCTGCAATATTTGGACTTTTC
CTGGGAGCCGGGAGCTTGATACACTGTGGACTAATCATATTAGTTAGCATTCTAAGTTTT
GAACTCTACCCTTGTCCGTTGGGCCTCAAAGGATCGACCAAGTGAACATTTATTTGATCT
TTATGTAAAAGATTACTAATACCTGGTGGCTTGGGTTGGAAAGGACAATCAGATTCTTCT
GTTAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6336#0      CGCGAGACGAGGAGAGAGGAGAAGAGATTCCGTAGCGTAGGCGAGAGGCGGCGGCGGAGG 60
consensus_6336#1      ------------------------------------------------------------
                                                                                  

consensus_6336#0      CGGAGGAGAGGAGGAGCGGCGGCGGCGGCGGCGATGGCGAGGAGCGACAGCTGCTTGGCG 120
consensus_6336#1      ------------------------------------------------------------
                                                                                  

consensus_6336#0      CGCGTCGGCGCCGGGGTCGCCATCGGCGGCGCGGTCGGCGGGGCCGTCGGTGCTGTCTAT 180
consensus_6336#1      ------------------------------------------------------------
                                                                                  

consensus_6336#0      GGGACTTATGAGGCTATCAGATACAAGGTCCCTGGCTTGCTGAAGATCAGATACATTGG- 239
consensus_6336#1      ----------------------------------------AGAGGACGAGACAAGGGGGG 20
                                                               ** **  *** *    ** 

consensus_6336#0      ACAGACCACCGTTGGTAGTGCTGCAATATTTGGACTTTTCCTGGGAGCCGGGAGCTTGAT 299
consensus_6336#1      ACAGACCACCGTTGGTAGTGCTGCAATATTTGGACTTTTCCTGGGAGCCGGGAGCTTGAT 80
                      ************************************************************

consensus_6336#0      ACACTGTGGAA-AATCATATTAGTTAGCATTCTAAGTTTTGAACTCTACCCTTGTCCGTT 358
consensus_6336#1      ACACTGTGGACTAATCATATTAGTTAGCATTCTAAGTTTTGAACTCTACCCTTGTCCGTT 140
                      **********  ************************************************

consensus_6336#0      GGGCCTCAAAGGATCGACCAAGTGAACATTTATTTGATCTTTATGTAAAAGATTACTAAT 418
consensus_6336#1      GGGCCTCAAAGGATCGACCAAGTGAACATTTATTTGATCTTTATGTAAAAGATTACTAAT 200
                      ************************************************************

consensus_6336#0      ACCTGGTGGCTTGGGTTGGAAAGGACAATCAGATTCTTCTGTTATCATGTGTTGCTCTTC 478
consensus_6336#1      ACCTGGTGGCTTGGGTTGGAAAGGACAATCAGATTCTTCTGTTAAAAAAAAAAAA----- 255
                      ********************************************  *             

consensus_6336#0      CTTTTGGTGTGGAAATAAAATTTGTTCATCTGTATGAGGGATGCTGATGGTTGAAGCAGC 538
consensus_6336#1      ------------------------------------------------------------
                                                                                  

consensus_6336#0      NCCGGTGAAAAAAN 552
consensus_6336#1      --------------