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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6339#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1646 fasta sequence
[CCCACTAATCCCGGTGCCTTCTTGATCCCACCGATCCCCGTGCTTTCTTCTCTTCGGCATCGCCACGAAGCGGAGGGTGCCATCGCAGCAGCCATCGCCGACGAGCGGCTCACGGTCACTGCGGCCTCGGCAACGTCCGGCGATCGTCGTCGATCCTTACCTTACTCCCTCACGCCCCCTAGCTGTCTCCTCGAGAAGAATCCTGCTTAAGTTGATTTACCTCCGGGTGTTTACGGTCTTTCAAATTGCTAAGCATAATCTTGAACTTTCCAAGAAAAAAAACAGGCCTGCATTAACTAGTGCCAGGGCAGCAATAATGGATTTGTGCGACGACACTCATTTCCCATGGGAGGGGTCCCATACTATTGTTGGCAGCAAGCGGAAAGCTAAGGATTTAATGGCAAAAATCTGAACTTGTTTAATGGAACTTATAAGATGGTGGAAACCACAGTTGATGTTATGATAAGAAAAGGAACAAACATGAGACTCGAAAGCTACGAGTTTTTGAGTGATTTCAAGCATGGCAACGCTGTGGTACTCCTGGACTACACAGAGTCCGGAAACAAGGGGAGTTTCATCGTCACACAAGTTGATGGGTCATTCACTGCCTGGTTTGAAACAGGTGGAAAAGAGCTCTGCTTTGACTCATCTGGTCATATTACTCAGTTATTTAAAGACATGATTGTCGATTTTTACGATCTGACCTGGAGTTTGCACAAGAGGCACTTAGTCATGCAGAATTTTGTAAAGGAAAATATATACGTCAAAATCTTTGATGGCGTACCCAAACTTATGATTCTACTAACTGAAGTTAAATTGGTTGATCAGCTAGGGCCATTCAAACAGGACTGGAGTCATGTCCAAGGCCTCATGACTTGGTGTAAAGAACAATCTGGTTTAAAAATGGACTTTCTTACCAAGAGTTTCTATGATTTCATCGGATCTACCGACTGCACAGTAATCAAGCTGAGAAACTACCCTGATGATTGGGATGAAAAAAAGAAAGGTGATTATTTGCTCACACTCGCAGAAGTAAACCACGGAGTTCTTAAAGATAAGTTGAAGAGTAGGGATGATTTTCATTGGCCGTTTGTGAAGCTGCCTAAGCTGGAGCAGAACTTACCACCAATGTTACAGCAAATTCTTAGTGGGGAGAGACAGATGAAAAGAAAGTTCGACGTGACATTCTTTTGTGATTATATCAACCTCTTGAGAAACTCCTACAAGAAATTCAATGAATTACCAGAAAATGTTAAGGCTTTATGCATAAACCAGGATGGCTTCATTAAACTGATAGATGGGTGGTCTCCTGAGTTTTGGACCAAGATCTACGAGAAAATTGGGTGGCCAGATTATAATATCTGGAAGTGGCCTTGTAAAAAATAGCTTTAGTGCTTTGCATTTGACCAGAACACTGCTTGATCTCAATGATGGCGATGCCGGTGCCCGCGCTGACATTCTCAGGACATATGGTGCTGTTCTGCAGGTCCGATCCTTAGATGGCTCCTGTTAGGAGTTTTTGGTTCTTAGAATTATGTCAGATGCTATCTCGAAACTCTCAAGTAATTTTTTGTCCTCCTGCATGAAGCAAAACTTAGTGTATTGGTTGAAAATCTGGCATGATTGAATGGAGAACTATCGAGATT]
[+] EMBL AK064171 [CCCACTAATCCCGGTGCCTTCTTGATCCCACCGATCCCCGTGCTTTCTTCTCTTCGGCATCGCCACGAAGCGGAGGGTGCCATCGCAGCAGCCATCGCCGACGAGCGGCTCACGGTCACTGCGGCCTCGGCAACGTCCGGCGATCGTCGTCGATCCTTACCTTACTCCCTCACGCCCCCTAGCTGTCTCCTCGAGAAGAATCCTGCTTAAGTTGATTTACCTCCGGGTGTTTACGGTCTTTCAAATTGCTAAGCATAATCTTGAACTTTCCAAGAAAAAAAACAGGCCTGCATTAACTAGTGCCAGGGCAGCAATAATGGATTTGTGCGACGACACTCATTTCCCATGGGAGGGGTCCCATACTATTGTTGGCAGCAAGCGGAAAGCTAAGGATTTAATGGCAAAAATCTGAACTTGTTTAATGGAACTTATAAGATGGTGGAAACCACAGTTGATGTTATGATAAGAAAAGGAACAAACATGAGACTCGAAAGCTACGAGTTTTTGAGTGATTTCAAGCATGGCAACGCTGTGGTACTCCTGGACTACACAGAGTCCGGAAACAAGGGGAGTTTCATCGTCACACAAGTTGATGGGTCATTCACTGCCTGGTTTGAAACAGGTGGAAAAGAGCTCTGCTTTGACTCATCTGGTCATATTACTCAGTTATTTAAAGACATGATTGTCGATTTTTACGATCTGACCTGGAGTTTGCACAAGAGGCACTTAGTCATGCAGAATTTTGTAAAGGAAAATATATACGTCAAAATCTTTGATGGCGTACCCAAACTTATGATTCTACTAACTGAAGTTAAATTGGTTGATCAGCTAGGGCCATTCAAACAGGACTGGAGTCATGTCCAAGGCCTCATGACTTGGTGTAAAGAACAATCTGGTTTAAAAATGGACTTTCTTACCAAGAGTTTCTATGATTTCATCGGATCTACCGACTGCACAGTAATCAAGCTGAGAAACTACCCTGATGATTGGGATGAAAAAAAGAAAGGTGATTATTTGCTCACACTCGCAGAAGTAAACCACGGAGTTCTTAAAGATAAGTTGAAGAGTAGGGATGATTTTCATTGGCCGTTTGTGAAGCTGCCTAAGCTGGAGCAGAACTTACCACCAATGTTACAGCAAATTCTTAGTGGGGAGAGACAGATGAAAAGAAAGTTCGACGTGACATTCTTTTGTGATTATATCAACCTCTTGAGAAACTCCTACAAGAAATTCAATGAATTACCAGAAAATGTTAAGGCTTTATGCATAAACCAGGATGGCTTCATTAAACTGATAGATGGGTGGTCTCCTGAGTTTTGGACCAAGATCTACGAGAAAATTGGGTGGCCAGATTATAATATCTGGAAGTGGCCTTGTAAAAAATAGCTTTAGTGCTTTGCATTTGACCAGAACACTGCTTGATCTCAATGATGGCGATGCCGGTGCCCGCGCTGACATTCTCAGGACATATGGTGCTGTTCTGCAGGTCCGATCCTTAGATGGCTCCTGTTAGGAGTTTTTGGTTCTTAGAATTATGTCAGATGCTATCTCGAAACTCTCAAGTAATTTTTTGTCCTCCTGCATGAAGCAAAACTTAGTGTATTGGTTGAAAATCTGGCATGATTGAATGGAGAACTATCGAGATT]
[+] EMBL CF292837 [ CATCGCCACGAAGCGGAGGGTGCCATCGCAGCAGCCATCGCCGACGAGCGGCTCACGGTCACTGCGGCCTCGGCAACGTCCGGCGATCGTCGTCGATCCTTACCTTACTCCCTCACGCCCCCTAGCTGTCTCCTCGAGAAGAATCCTGCTTAAGTTGATTTACCTCCGGGTGTTTACGGTCTTTCAAATTGCTAAGCATAATCTTGAACTTTCCAAGAAAAAAAACAGGCCTGCATTAACTAGTGCCAGGGCAGCAATAATGGATTTGTGCGACGACACTCATTTCCCATGGGAGAGGTCCCATACTATTGTTGGCAGCAAGCGGAAAGCTAAGGATTTAATGGCAAAAATCTGAACTTGTCTAATGGAACTTATAAGATGGTGGAAACCACAGTTGATGTTATGATAAGAAAAGGAACAAACATGAGACTCG AAGCCACGAGTTTTTGAGTGATTTCAAGCATGGCAACGCTGTGGTACTCCTGGACTACACAGAGTCCGGAAAC AGGGGAGTTTCATCGTCACACAAGTTGATGGGTCATTCACTGCCTGGTTTGAAACAGGTGGAAAAGAGCTCTGCTTTGACTCATCTGGTCATATTACTCAGTTATTTAAAGACATGATTGTCGATTTT ]
consensusID : consensus_6339#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 735 fasta sequence
[CTGAGAAACTACCGTGATGATTGGGATGAAAAAAAGAAAGGTGATTATTTGCTCACACTCGCAGAAGTAAACCCCGGAGTTCTTAAAGATAAGTTGAAGAGTAGGGATGATTTTCACTGGCCGTTTGTGAAGCTGCCTAAGTTGGAGCAGAACTTACCACCAATGTTACAGCAAATTCTTAGTGGGGAGAGACAGATGAAAAGAAAGTTCGACGTGACATTCTTTTGTGATTATATCAACCTCTTGAGAAACTCCTACAAGAAATTCAATGAATTACCAGAAAATGTTAAGGCTTTATGCATAAACCAGGATGGCTTCATTAAACTGATAGATGGGTGGTCTCATGAGTTTTGGACCAAGATCTACGAGAAAATTGGGTGGCCAGATTATAATATCTGGAAGTGGCCTTGTAAAAAATAGCTTTAGTGCTTTGCATTTGACCAGTGAGTACTGCATTAATTCTTAATGAACACTGCTTGATCTCAATGATGGCGATGCCGGTGCCCGCGCTGACATTCTCAGGACATATGGTGCTGTTCTGCAGGTCCGATCCCTAGATGGCTCCTGTTAGGAGTTTTTGGTTCTTAGAATTATGTTAGATGCTATCTCGAAACTCTCAAGTAATTTTTTGTCCTCACTGCACGAAGCAAACCTTAGTGTATTGGGTGAAAATCTGGCATGATTGAATGGAGATCTATCGAGAACGGTACGGAAAATGAGGGGGGGCCCGGACCC]
[-] EMBL CB673747 [CTGAGAAACTACCGTGATGATTGGGATGAAAAAAAGAAAGGTGATTATTTGCTCACACTCGCAGAAGTAAACCCCGGAGTTCTTAAAGATAAGTTGAAGAGTAGGGATGATTTTCACTGGCCGTTTGTGAAGCTGCCTAAGTTGGAGCAGAACTTACCACCAATGTTACAGCAAATTCTTAGTGGGGAGAGACAGATGAAAAGAAAGTTCGACGTGACATTCTTTTGTGATTATATCAACCTCTTGAGAAACTCCTACAAGAAATTCAATGAATTACCAGAAAATGTTAAGGCTTTATGCATAAACCAGGATGGCTTCATTAAACTGATAGATGGGTGGTCTCATGAGTTTTGGACCAAGATCTACGAGAAAATTGGGTGGCCAGATTATAATATCTGGAAGTGGCCTTGTAAAAAATAGCTTTAGTGCTTTGCATTTGACCAGTGAGTACTGCATTAATTCTTAATGAACACTGCTTGATCTCAATGATGGCGATGCCGGTGCCCGCGCTGACATTCTCAGGACATATGGTGCTGTTCTGCAGGTCCGATCCCTAGATGGCTCCTGTTAGGAGTTTTTGGTTCTTAGAATTATGTTAGATGCTATCTCGAAACTCTCAAGTAATTTTTTGTCCTCACTGCACGAAGCAAACCTTAGTGTATTGGGTGAAAATCTGGCATGATTGAATGGAGATCTATCGAGAACGGTACGGAAAATGAGGGGGGGCCCGGACCC]
consensusID : consensus_6339#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 399 fasta sequence
[ACCAAGATCTACGAGAAAATTGGGTGGCCAGATTATAATATCTGGAAGTGGCCTTGTAAAAAATAGCTTTAGTGCTTTGCATTTGACCAGTCCTTGATCTAAAAAAAAAGTTCAATGGGCTTTGGAAAAATCTAATACTTTCTCCGTTTCACAATGAACACTGCTTGATCTCAATGATGGCGATGCCGGTGCCCGCGCTGACATTCTCAGGACATATGGTGCTATTCTGCAGGTCCGATCCTAAAATGGCTCCTGTTAGGAGTTTTTGGTTCTTAGAATTATGTTAGATGCTATCTCGAAACTCTCAAGTAATTTTTTGTCCTCCTGCATGAAGCAAAACTTAGTGTATTGGTTGAAAATCTGGCATGATTGAATGAAAAACTATCGAGATTCAAAAAA]
[-] EMBL CF292838 [ACCAAGATCTACGAGAAAATTGGGTGGCCAGATTATAATATCTGGAAGTGGCCTTGTAAAAAATAGCTTTAGTGCTTTGCATTTGACCAGTCCTTGATCTAAAAAAAAAGTTCAATGGGCTTTGGAAAAATCTAATACTTTCTCCGTTTCACAATGAACACTGCTTGATCTCAATGATGGCGATGCCGGTGCCCGCGCTGACATTCTCAGGACATATGGTGCTATTCTGCAGGTCCGATCCTAAAATGGCTCCTGTTAGGAGTTTTTGGTTCTTAGAATTATGTTAGATGCTATCTCGAAACTCTCAAGTAATTTTTTGTCCTCCTGCATGAAGCAAAACTTAGTGTATTGGTTGAAAATCTGGCATGATTGAATGAAAAACTATCGAGATTCAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6339#0 CCCACTAATCCCGGTGCCTTCTTGATCCCACCGATCCCCGTGCTTTCTTCTCTTCGGCAT 60
consensus_6339#1 ------------------------------------------------------------
consensus_6339#2 ------------------------------------------------------------
consensus_6339#0 CGCCACGAAGCGGAGGGTGCCATCGCAGCAGCCATCGCCGACGAGCGGCTCACGGTCACT 120
consensus_6339#1 ------------------------------------------------------------
consensus_6339#2 ------------------------------------------------------------
consensus_6339#0 GCGGCCTCGGCAACGTCCGGCGATCGTCGTCGATCCTTACCTTACTCCCTCACGCCCCCT 180
consensus_6339#1 ------------------------------------------------------------
consensus_6339#2 ------------------------------------------------------------
consensus_6339#0 AGCTGTCTCCTCGAGAAGAATCCTGCTTAAGTTGATTTACCTCCGGGTGTTTACGGTCTT 240
consensus_6339#1 ------------------------------------------------------------
consensus_6339#2 ------------------------------------------------------------
consensus_6339#0 TCAAATTGCTAAGCATAATCTTGAACTTTCCAAGAAAAAAAACAGGCCTGCATTAACTAG 300
consensus_6339#1 ------------------------------------------------------------
consensus_6339#2 ------------------------------------------------------------
consensus_6339#0 TGCCAGGGCAGCAATAATGGATTTGTGCGACGACACTCATTTCCCATGGGAGGGGTCCCA 360
consensus_6339#1 ------------------------------------------------------------
consensus_6339#2 ------------------------------------------------------------
consensus_6339#0 TACTATTGTTGGCAGCAAGCGGAAAGCTAAGGATTTAATGGCAAAAATCTGAACTTGTTT 420
consensus_6339#1 ------------------------------------------------------------
consensus_6339#2 ------------------------------------------------------------
consensus_6339#0 AATGGAACTTATAAGATGGTGGAAACCACAGTTGATGTTATGATAAGAAAAGGAACAAAC 480
consensus_6339#1 ------------------------------------------------------------
consensus_6339#2 ------------------------------------------------------------
consensus_6339#0 ATGAGACTCGAAAGCTACGAGTTTTTGAGTGATTTCAAGCATGGCAACGCTGTGGTACTC 540
consensus_6339#1 ------------------------------------------------------------
consensus_6339#2 ------------------------------------------------------------
consensus_6339#0 CTGGACTACACAGAGTCCGGAAACAAGGGGAGTTTCATCGTCACACAAGTTGATGGGTCA 600
consensus_6339#1 ------------------------------------------------------------
consensus_6339#2 ------------------------------------------------------------
consensus_6339#0 TTCACTGCCTGGTTTGAAACAGGTGGAAAAGAGCTCTGCTTTGACTCATCTGGTCATATT 660
consensus_6339#1 ------------------------------------------------------------
consensus_6339#2 ------------------------------------------------------------
consensus_6339#0 ACTCAGTTATTTAAAGACATGATTGTCGATTTTTACGATCTGACCTGGAGTTTGCACAAG 720
consensus_6339#1 ------------------------------------------------------------
consensus_6339#2 ------------------------------------------------------------
consensus_6339#0 AGGCACTTAGTCATGCAGAATTTTGTAAAGGAAAATATATACGTCAAAATCTTTGATGGC 780
consensus_6339#1 ------------------------------------------------------------
consensus_6339#2 ------------------------------------------------------------
consensus_6339#0 GTACCCAAACTTATGATTCTACTAACTGAAGTTAAATTGGTTGATCAGCTAGGGCCATTC 840
consensus_6339#1 ------------------------------------------------------------
consensus_6339#2 ------------------------------------------------------------
consensus_6339#0 AAACAGGACTGGAGTCATGTCCAAGGCCTCATGACTTGGTGTAAAGAACAATCTGGTTTA 900
consensus_6339#1 ------------------------------------------------------------
consensus_6339#2 ------------------------------------------------------------
consensus_6339#0 AAAATGGACTTTCTTACCAAGAGTTTCTATGATTTCATCGGATCTACCGACTGCACAGTA 960
consensus_6339#1 ------------------------------------------------------------
consensus_6339#2 ------------------------------------------------------------
consensus_6339#0 ATCAAGCTGAGAAACTACCCTGATGATTGGGATGAAAAAAAGAAAGGTGATTATTTGCTC 1020
consensus_6339#1 ------CTGAGAAACTACCGTGATGATTGGGATGAAAAAAAGAAAGGTGATTATTTGCTC 54
consensus_6339#2 ------------------------------------------------------------
consensus_6339#0 ACACTCGCAGAAGTAAACCACGGAGTTCTTAAAGATAAGTTGAAGAGTAGGGATGATTTT 1080
consensus_6339#1 ACACTCGCAGAAGTAAACCCCGGAGTTCTTAAAGATAAGTTGAAGAGTAGGGATGATTTT 114
consensus_6339#2 ------------------------------------------------------------
consensus_6339#0 CATTGGCCGTTTGTGAAGCTGCCTAAGCTGGAGCAGAACTTACCACCAATGTTACAGCAA 1140
consensus_6339#1 CACTGGCCGTTTGTGAAGCTGCCTAAGTTGGAGCAGAACTTACCACCAATGTTACAGCAA 174
consensus_6339#2 ------------------------------------------------------------
consensus_6339#0 ATTCTTAGTGGGGAGAGACAGATGAAAAGAAAGTTCGACGTGACATTCTTTTGTGATTAT 1200
consensus_6339#1 ATTCTTAGTGGGGAGAGACAGATGAAAAGAAAGTTCGACGTGACATTCTTTTGTGATTAT 234
consensus_6339#2 ------------------------------------------------------------
consensus_6339#0 ATCAACCTCTTGAGAAACTCCTACAAGAAATTCAATGAATTACCAGAAAATGTTAAGGCT 1260
consensus_6339#1 ATCAACCTCTTGAGAAACTCCTACAAGAAATTCAATGAATTACCAGAAAATGTTAAGGCT 294
consensus_6339#2 ------------------------------------------------------------
consensus_6339#0 TTATGCATAAACCAGGATGGCTTCATTAAACTGATAGATGGGTGGTCTCCTGAGTTTTGG 1320
consensus_6339#1 TTATGCATAAACCAGGATGGCTTCATTAAACTGATAGATGGGTGGTCTCATGAGTTTTGG 354
consensus_6339#2 ------------------------------------------------------------
consensus_6339#0 ACCAAGATCTACGAGAAAATTGGGTGGCCAGATTATAATATCTGGAAGTGGCCTTGTAAA 1380
consensus_6339#1 ACCAAGATCTACGAGAAAATTGGGTGGCCAGATTATAATATCTGGAAGTGGCCTTGTAAA 414
consensus_6339#2 ACCAAGATCTACGAGAAAATTGGGTGGCCAGATTATAATATCTGGAAGTGGCCTTGTAAA 60
************************************************************
consensus_6339#0 AAATAGCTTTAGTGCTTTGCATTTGACCAG------------------------------ 1410
consensus_6339#1 AAATAGCTTTAGTGCTTTGCATTTGACCAGTGAGTACTGCATTAA--------------- 459
consensus_6339#2 AAATAGCTTTAGTGCTTTGCATTTGACCAGTCCTTGATCTAAAAAAAAAGTTCAATGGGC 120
******************************
consensus_6339#0 ------------------------------------AACACTGCTTGATCTCAATGATGG 1434
consensus_6339#1 ---------------------------TTCTTAATGAACACTGCTTGATCTCAATGATGG 492
consensus_6339#2 TTTGGAAAAATCTAATACTTTCTCCGTTTCACAATGAACACTGCTTGATCTCAATGATGG 180
************************
consensus_6339#0 CGATGCCGGTGCCCGCGCTGACATTCTCAGGACATATGGTGCTGTTCTGCAGGTCCGATC 1494
consensus_6339#1 CGATGCCGGTGCCCGCGCTGACATTCTCAGGACATATGGTGCTGTTCTGCAGGTCCGATC 552
consensus_6339#2 CGATGCCGGTGCCCGCGCTGACATTCTCAGGACATATGGTGCTATTCTGCAGGTCCGATC 240
******************************************* ****************
consensus_6339#0 CTTAGATGGCTCCTGTTAGGAGTTTTTGGTTCTTAGAATTATGTCAGATGCTATCTCGAA 1554
consensus_6339#1 CCTAGATGGCTCCTGTTAGGAGTTTTTGGTTCTTAGAATTATGTTAGATGCTATCTCGAA 612
consensus_6339#2 CTAAAATGGCTCCTGTTAGGAGTTTTTGGTTCTTAGAATTATGTTAGATGCTATCTCGAA 300
* * *************************************** ***************
consensus_6339#0 ACTCTCAAGTAATTTTTTGTCCTC-CTGCATGAAGCAAAACTTAGTGTATTGGTTGAAAA 1613
consensus_6339#1 ACTCTCAAGTAATTTTTTGTCCTCACTGCACGAAGCAAACCTTAGTGTATTGGGTGAAAA 672
consensus_6339#2 ACTCTCAAGTAATTTTTTGTCCTC-CTGCATGAAGCAAAACTTAGTGTATTGGTTGAAAA 359
************************ ***** ******** ************* ******
consensus_6339#0 TCTGGCATGATTGAATGGAGAACTATCGAGATT--------------------------- 1646
consensus_6339#1 TCTGGCATGATTGAATGGAGATCTATCGAGAACGGTACGGAAAATGAGGGGGGGCCCGGA 732
consensus_6339#2 TCTGGCATGATTGAATGAAAAACTATCGAGATTCAAAAAA-------------------- 399
***************** * * *********
consensus_6339#0 ---
consensus_6339#1 CCC 735
consensus_6339#2 ---
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||