cluster # 6342

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6342 cluster # 6342 Sequences # 4 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6342#0 length = 1925 sequences # 4
consensusID : consensus_6342#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1925
fasta sequence
                              [CTAGAAGCTTCTAGAAGGCGCAGCTGCAGCGCTGGCTAATGGCGTTCGCGACCTCCACGCTCCCATTCGCGCCATCCAACCCCTCGCCGTCCTCCCGCTCCGCCGCAGCGGCTTTCTCTCCCCGCGGCGGGGTCCACTTCGCCGCCGCTAGGAGCGGCCTCCCGCTCGCGTGCGCCGCGCCGAGGCACCGAGGGAGGCCTCCTCCGAGGAGGCGCCGCGGAGGGTGCCTGGTGGTGTGGGCGTCCGCCGACTACTACGCCACGCTCGGCGTGCCGCGCTCCGCGAGCAACAAGGACATCAAGGCCGCCTACCGGAAGCTTGCGCGCCAGTACCATCCTGATGTCAATAAGGAACCTGGAGCAACCGATAAGTTCAAAGAGATAAGTGCAGCATATGAGGTGCTATCAGATGAAAAGAAGAGGGCGCTGTATGATCAATATGGTGAAGCTGGGGTTAGGAGTGCGGTTGGAGGCTCAGCTGGAGCTTACACAAGTAATCCTTTTGATCTATTTGAGACATTCTTTGGAGCAAGCATGGGTGGCTTTTCTGGTATGGACCAGGGAACATT-TAGGACACGCAGGAGGAGCACTGCTGTTCAGGGGGAAGACATCAGATATGATGTGAATCTGGGGTTCTCAGAGGCAATATTTGGAACAGAAAAGGATATTATATTATCTCATTTGGAGACATGCGATGCATGTGCTGGTTCTGGATCAAAGATTGGGTCGAAAATGAGAATATGCTCCACATGTGGTGGTCGAGGGCAAGTAATGAGAACTGAGCAGACACCATTTGGTCTGTTCTCCCAGGTTTCAATTTGCCCCACCTGTGCAGGAGAGGGTGAAGTCATTTCAGAGTATTGCAAGAAATGTGCTGGAGAGGGGCGTGTTCGTGTTAGAAAGGAGATCAAAGTAAAAATTCCTCCAGGTGTTAGCAAAGGTAGTACTCTTCGTGTACGTGGTGAAGGTGATGCGGGACCAAAAGGAGGACCTCCTGGAGATCTTTTTGTTTGCCTTGATATAGAGGAGCCAGCAGATATTAAAAGGGATGGTATCAACTTGTATTCAACTGTTTCAGTAAGCTACATTGAAGCTATTCTGGGCACTGTTAAAAAGGTCAGAACTGTTGATGGAAATAGTGAACTTAGAATACCTCCAGGTACCCAACCTGGTGATGTAGTGGTTCTAGCAAAGCAAGGTGTTCCATCATTGAATAAACCATCTGCTCGTGGTGATCATCTATTCACTATTAAGGTCACTATACCCAAACGTATAAGCGGACGAGAAAAGGAGCTACTTGAGGAACTGGCTTCTTTGAGCAATGGTGGTTTTGCTGGTGCACCTGTGAAGCCAAAATCCATACGCCAAGAGAATGAAACTACTGTTGCCCAAGAAAATTCGGATCAACCTGATGAAGGGGAGGGTGACTGGTTGAAGAAACTTCAAGATTTTGCAGGATCCATTGCTAATGGTGCTGCCAAGTGGCTAAAAGACAACCTTTAGCCTGTAAATAGTTACCGCGGAATGCATTTATATTAATCGCTGTTATGGTGTAGTCCAATCTGCTATTCTTCAATTCATTGGATCCCACGAGCTGTTGCATTTGTTTTGGAGAGGCTCAAAGTTCTCAGGCTGTGAAGTGGCAACGGAGAGGCTGAATCTGTTAATTAATTCCATCGGCAACGTTCTTATTTTGGTATGCTTGTAAAGTGGCATGATTTTTTATGTAGTTGCAGTTATCATTCCCTAGAGCATGTGATGGTTTTACGTCACTTGCTGCTGATACTGAATTCAGTAAAGATAATGCACTGTAAATATATATTTCATGCAGTAGAGCATCTTGAAATCTCAGGTATGTACTCTGTGGGTAAGCAACCGTGAGGTGTGTCGTTCTGAACTAGAGATATTTAAATCCAGAACAAGAGC]

[+] EMBL AK068801             [CTAGAAGCTTCTAGAAGGCGCAGCTGCAGCGCTGGCTAATGGCGTTCGCGACCTCCACGCTCCCATTCGCGCCATCCAACCCCTCGCCGTCCTCCCGCTCCGCCGCAGCGGCTTTCTCTCCCCGCGGCGGGGTCCACTTCGCCGCCGCTAGGAGCGGCCTCCCGCTCGCGTGCGCCGCGCCGAGGCACCGAGGGAGGCCTCCTCCGAGGAGGCGCCGCGGAGGGTGCCTGGTGGTGTGGGCGTCCGCCGACTACTACGCCACGCTCGGCGTGCCGCGCTCCGCGAGCAACAAGGACATCAAGGCCGCCTACCGGAAGCTTGCGCGCCAGTACCATCCTGATGTCAATAAGGAACCTGGAGCAACCGATAAGTTCAAAGAGATAAGTGCAGCATATGAGGTGCTATCAGATGAAAAGAAGAGGGCGCTGTATGATCAATATGGTGAAGCTGGGGTTAGGAGTGCGGTTGGAGGCTCAGCTGGAGCTTACACAAGTAATCCTTTTGATCTATTTGAGACATTCTTTGGAGCAAGCATGGGTGGCTTTTCTGGTATGGACCAGGGAACATT TAGGACACGCAGGAGGAGCACTGCTGTTCAGGGGGAAGACATCAGATATGATGTGAATCTGGGGTTCTCAGAGGCAATATTTGGAACAGAAAAGGATATTATATTATCTCATTTGGAGACATGCGATGCATGTGCTGGTTCTGGATCAAAGATTGGGTCGAAAATGAGAATATGCTCCACATGTGGTGGTCGAGGGCAAGTAATGAGAACTGAGCAGACACCATTTGGTCTGTTCTCCCAGGTTTCAATTTGCCCCACCTGTGCAGGAGAGGGTGAAGTCATTTCAGAGTATTGCAAGAAATGTGCTGGAGAGGGGCGTGTTCGTGTTAGAAAGGAGATCAAAGTAAAAATTCCTCCAGGTGTTAGCAAAGGTAGTACTCTTCGTGTACGTGGTGAAGGTGATGCGGGACCAAAAGGAGGACCTCCTGGAGATCTTTTTGTTTGCCTTGATATAGAGGAGCCAGCAGATATTAAAAGGGATGGTATCAACTTGTATTCAACTGTTTCAGTAAGCTACATTGAAGCTATTCTGGGCACTGTTAAAAAGGTCAGAACTGTTGATGGAAATAGTGAACTTAGAATACCTCCAGGTACCCAACCTGGTGATGTAGTGGTTCTAGCAAAGCAAGGTGTTCCATCATTGAATAAACCATCTGCTCGTGGTGATCATCTATTCACTATTAAGGTCACTATACCCAAACGTATAAGCGGACGAGAAAAGGAGCTACTTGAGGAACTGGCTTCTTTGAGCAATGGTGGTTTTGCTGGTGCACCTGTGAAGCCAAAATCCATACGCCAAGAGAATGAAACTACTGTTGCCCAAGAAAATTCGGATCAACCTGATGAAGGGGAGGGTGACTGGTTGAAGAAACTTCAAGATTTTGCAGGATCCATTGCTAATGGTGCTGCCAAGTGGCTAAAAGACAACCTTTAGCCTGTAAATAGTTACCGCGGAATGCATTTATATTAATCGCTGTTATGGTGTAGTCCAATCTGCTATTCTTCAATTCATTGGATCCCACGAGCTGTTGCATTTGTTTTGGAGAGGCTCAAAGTTCTCAGGCTGTGAAGTGGCAACGGAGAGGCTGAATCTGTTAATTAATTCCATCGGCAACGTTCTTATTTTGGTATGCTTGTAAAGTGGCATGATTTTTTATGTAGTTGCAGTTATCATTCCCTAGAGCATGTGATGGTTTTACGTCACTTGCTGCTGATACTGAATTCAGTAAAGATAATGCACTGTAAATATATATTTCATGCAGTAGAGCATCTTGAAATCTCAGGTATGTACTCTGTGGGTAAGCAACCGTGAGGTGTGTCGTTCTGAACTAGAGATATTTAAATCCAGAACAAGAGC]
[+] EMBL CB680968             [                                                                                                                                                                                                                                                                                                                                                          TAAGGAACCTGGAGCAACCGATAAGTTCAAAGAGATAAGTGCAGCATATGAGGTGCTATCAGATGAAAAGAAAAGGGCGCTGTATGATCAATATGGTGAAGCTGGGGTTAGGAGTGCGGCTGGAGGCTCAACTGGAGCTTACACAAGTAATCCTTTTGATCTATTTGAGACATTCTTTGGAGCAAGCATGGGTGGCTTTTCTGGTATGGACCAGGGAACATTCTACGACACGCAGGAGGAGCACTGCTGTTCAGGGGGAAGACATCACATATGATGTGAATCTGGGGTTCTCATACGCAATATTTGGAACAGAAAAGGATATTATATTATCTCATTTGGACACATGCGATGCATGTGCTGGTTCTGGATCAAAGATTGGGTCGAAAATGAGAATATGCTCCACATGTGGTGGTCGAGGGCAAGTAATGAGAACTGAGCAGACACCATTTGGTCTGTTCTCCCAGGTTTCAATTTGCCCCACCTGTGCAGGAGAGGGTGAAGTCATTTCACAGTATTGCAAGAAATGTGCTGGAGAGGGGCGTGTTCTTGTTAGAAATCAGATCAAAGTAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CB680969             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GAGATCAAAGTAAAAATTCCTCCAGGTGTTAGCAAAGGTAGTACTCTTCGTGTACGTGGTGAAGGTGATGCGGGACCAAAAGGAGGACCTCCTGGAGATCTTTTTGTTTGCCTTGATATAGAGGAGCCAGCAGATATTAAAAGGGATGGTATCAACTTGTATTCAACTGTTTCAGTAAGCTACATTGAAGCTATTCTGGGCACTGTTAAAAAGGTCAGAACTGTTGATGGAAATAGTGAACTTAGAATACCTCCAGGTACCCAACCTGGTGATGTAGTGGTTCTAGCAAAGCAAGGTGTTCCATCATTGAATAAACCATCTGTTCGTGGTGATCATCTATTCACTATTAAGGTCACTATACCCAAACGTATAAGCGGACGAGAAAAGGAGCTACTTGAGGAACTGGCTTCTTTGAGCAATGGTGGTTTTGCTGGTGCACCTGTGAAGCCAAAATCCATACGCCAAGAGAATGAAACTACTGTTGCCCAAGAAAATTCGGATCAACCTGATGAAGGGGAGGGTGACTGGTTGAAGAAACTTCAAGATTTTGCAGGATCCATTGCTAATGGTGCTGCCAAGTGGCTAAAAGACAACCTTTAGCCTGTAAATAGTTACCGCGGAATGCATTTATATTAATCGCTGTTATGGTGTAGTCCAATCTGCTATTCT                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CA766473             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CTTGTAACNNACTGTTT AGTAAGCTACATTGAAGCTATTCTGGGCACTGTTAAAAAGGTCAGAACTGTTGATGGAAATAGTGAACTTAGAATACCTCCAGGTACCCAACCTGGTGATGTAGTGGTTCTAGCAAAGCAAGGTGTTCCATCATTGAATAAGCCATCTGCTCGTGGTGATCATCTATTCACTATTAAGGTCACTATACCCAAACGTATAAGCGGACGAGAAAAGGAGCTACTTGAGGAACTGGCTTCTTTGAGCAATGGTGGTTTTGCTCGTGCACCTGTGAAGCCAAAATCCATACGCCAAGAGAATGAAACTACTGTTGCCCAAGAAAATTCGGATCAACCTGATGAAGGGGAGGGTGACTGGTTGAAGAAACTTCAAGATTTTGCAGGATCCATTGCTAATGGTGCTGCCAAGTGGCTAAAAGACAACCTTTAGCCTGTAAATAGTTACCGCGGAATGCATTTATATTAATCGCTGTTATGGTGTAGTCCAATCTGCTATTCTTCAATTCATTGGATCCCACGAGCTGTTGCATTTGTTTTGGAGAGGCTCAAAGTTCTCAGGCTGTGAAGTGGCAACGAAGAGGCTGAATCTGTTAATTAATTCCATCGGCAACGTTCTTATTTTGGTATGCTTGTAAAGTGGCATGATTTTTT                                                                                                                                                                                                          ]




>consensus_6342#0
CTAGAAGCTTCTAGAAGGCGCAGCTGCAGCGCTGGCTAATGGCGTTCGCGACCTCCACGC
TCCCATTCGCGCCATCCAACCCCTCGCCGTCCTCCCGCTCCGCCGCAGCGGCTTTCTCTC
CCCGCGGCGGGGTCCACTTCGCCGCCGCTAGGAGCGGCCTCCCGCTCGCGTGCGCCGCGC
CGAGGCACCGAGGGAGGCCTCCTCCGAGGAGGCGCCGCGGAGGGTGCCTGGTGGTGTGGG
CGTCCGCCGACTACTACGCCACGCTCGGCGTGCCGCGCTCCGCGAGCAACAAGGACATCA
AGGCCGCCTACCGGAAGCTTGCGCGCCAGTACCATCCTGATGTCAATAAGGAACCTGGAG
CAACCGATAAGTTCAAAGAGATAAGTGCAGCATATGAGGTGCTATCAGATGAAAAGAAGA
GGGCGCTGTATGATCAATATGGTGAAGCTGGGGTTAGGAGTGCGGTTGGAGGCTCAGCTG
GAGCTTACACAAGTAATCCTTTTGATCTATTTGAGACATTCTTTGGAGCAAGCATGGGTG
GCTTTTCTGGTATGGACCAGGGAACATTTAGGACACGCAGGAGGAGCACTGCTGTTCAGG
GGGAAGACATCAGATATGATGTGAATCTGGGGTTCTCAGAGGCAATATTTGGAACAGAAA
AGGATATTATATTATCTCATTTGGAGACATGCGATGCATGTGCTGGTTCTGGATCAAAGA
TTGGGTCGAAAATGAGAATATGCTCCACATGTGGTGGTCGAGGGCAAGTAATGAGAACTG
AGCAGACACCATTTGGTCTGTTCTCCCAGGTTTCAATTTGCCCCACCTGTGCAGGAGAGG
GTGAAGTCATTTCAGAGTATTGCAAGAAATGTGCTGGAGAGGGGCGTGTTCGTGTTAGAA
AGGAGATCAAAGTAAAAATTCCTCCAGGTGTTAGCAAAGGTAGTACTCTTCGTGTACGTG
GTGAAGGTGATGCGGGACCAAAAGGAGGACCTCCTGGAGATCTTTTTGTTTGCCTTGATA
TAGAGGAGCCAGCAGATATTAAAAGGGATGGTATCAACTTGTATTCAACTGTTTCAGTAA
GCTACATTGAAGCTATTCTGGGCACTGTTAAAAAGGTCAGAACTGTTGATGGAAATAGTG
AACTTAGAATACCTCCAGGTACCCAACCTGGTGATGTAGTGGTTCTAGCAAAGCAAGGTG
TTCCATCATTGAATAAACCATCTGCTCGTGGTGATCATCTATTCACTATTAAGGTCACTA
TACCCAAACGTATAAGCGGACGAGAAAAGGAGCTACTTGAGGAACTGGCTTCTTTGAGCA
ATGGTGGTTTTGCTGGTGCACCTGTGAAGCCAAAATCCATACGCCAAGAGAATGAAACTA
CTGTTGCCCAAGAAAATTCGGATCAACCTGATGAAGGGGAGGGTGACTGGTTGAAGAAAC
TTCAAGATTTTGCAGGATCCATTGCTAATGGTGCTGCCAAGTGGCTAAAAGACAACCTTT
AGCCTGTAAATAGTTACCGCGGAATGCATTTATATTAATCGCTGTTATGGTGTAGTCCAA
TCTGCTATTCTTCAATTCATTGGATCCCACGAGCTGTTGCATTTGTTTTGGAGAGGCTCA
AAGTTCTCAGGCTGTGAAGTGGCAACGGAGAGGCTGAATCTGTTAATTAATTCCATCGGC
AACGTTCTTATTTTGGTATGCTTGTAAAGTGGCATGATTTTTTATGTAGTTGCAGTTATC
ATTCCCTAGAGCATGTGATGGTTTTACGTCACTTGCTGCTGATACTGAATTCAGTAAAGA
TAATGCACTGTAAATATATATTTCATGCAGTAGAGCATCTTGAAATCTCAGGTATGTACT
CTGTGGGTAAGCAACCGTGAGGTGTGTCGTTCTGAACTAGAGATATTTAAATCCAGAACA
AGAGC
clustalw multiple alignements is not computed in this case