cluster # 6350

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Oryza sativa
cluster # 6350 cluster # 6350 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6350#0 length = 768 sequences # 1
consensus_6350#1 length = 653 sequences # 1

consensus_6350#2 length = 344 sequences # 1
consensus_6350#3 length = 312 sequences # 1

consensusID : consensus_6350#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 768
fasta sequence

                              [AAGCACTAGGCATATCCATACATTGTGGCAGTCATTCAAAACAGTTGTGAGGATGATCGAAGCAGTACATATGAGTCTTCTTCCATTACAGAGCTATAAACTGCCTCTAAACTGCTCGTGTAGATGAGGCAAGTTTTGCAAGCATATATAGCACAGCTGCTCAAGTGAACGGTGAAAAATCTAGTAAACTCGAAGCCAGTCATTGAGCTCAATCATCAATATGTTCGAGCAAACTAAGTCATGTACTCCTGTTGTGTCTCAAACATGAGTCGGATGGTGACTGACTGGCAATTCACATAATTTTATGCGCCGATATATGTTACTGCCGTGCTTGCCAGTCATTTTCCAATGCAAAATTTGCTGAATATGCTGCTCAGGACTTCTTCAGAGATATCCTCCCCGCTGATTGTTGCAAGAGCCAATGCTGCTTCCCTCAAGTCTATAGTCCAGAAGTCCATCGGCAACTGCTCGTTGATAGATGACTCTAGCCTAGTAAAAGCTTGTTGGGTCCTCAATAGCTGTTCAAATTGCCTCTGATTTACAGTCCATCGCCGTCCCTCTGATGGTACAGGCTCAAGACCTCTGACCTCTATTATAGCCTTCTCCAACTCAGAAATGCCTTTACCAGTGACTGCACATGTTTGCACATGTTTTTTGAAAACTCCATGGAATTGTTCAAACTGTTCTCCTGAAATAAATGGTGCACAATCTACCTTGTTGATTACAAGGACCATTGGCACTGGAGCACCTGAAGATTTCTTACTGATC]

[+] EMBL CB658542             [AAGCACTAGGCATATCCATACATTGTGGCAGTCATTCAAAACAGTTGTGAGGATGATCGAAGCAGTACATATGAGTCTTCTTCCATTACAGAGCTATAAACTGCCTCTAAACTGCTCGTGTAGATGAGGCAAGTTTTGCAAGCATATATAGCACAGCTGCTCAAGTGAACGGTGAAAAATCTAGTAAACTCGAAGCCAGTCATTGAGCTCAATCATCAATATGTTCGAGCAAACTAAGTCATGTACTCCTGTTGTGTCTCAAACATGAGTCGGATGGTGACTGACTGGCAATTCACATAATTTTATGCGCCGATATATGTTACTGCCGTGCTTGCCAGTCATTTTCCAATGCAAAATTTGCTGAATATGCTGCTCAGGACTTCTTCAGAGATATCCTCCCCGCTGATTGTTGCAAGAGCCAATGCTGCTTCCCTCAAGTCTATAGTCCAGAAGTCCATCGGCAACTGCTCGTTGATAGATGACTCTAGCCTAGTAAAAGCTTGTTGGGTCCTCAATAGCTGTTCAAATTGCCTCTGATTTACAGTCCATCGCCGTCCCTCTGATGGTACAGGCTCAAGACCTCTGACCTCTATTATAGCCTTCTCCAACTCAGAAATGCCTTTACCAGTGACTGCACATGTTTGCACATGTTTTTTGAAAACTCCATGGAATTGTTCAAACTGTTCTCCTGAAATAAATGGTGCACAATCTACCTTGTTGATTACAAGGACCATTGGCACTGGAGCACCTGAAGATTTCTTACTGATC]




>consensus_6350#0
AAGCACTAGGCATATCCATACATTGTGGCAGTCATTCAAAACAGTTGTGAGGATGATCGA
AGCAGTACATATGAGTCTTCTTCCATTACAGAGCTATAAACTGCCTCTAAACTGCTCGTG
TAGATGAGGCAAGTTTTGCAAGCATATATAGCACAGCTGCTCAAGTGAACGGTGAAAAAT
CTAGTAAACTCGAAGCCAGTCATTGAGCTCAATCATCAATATGTTCGAGCAAACTAAGTC
ATGTACTCCTGTTGTGTCTCAAACATGAGTCGGATGGTGACTGACTGGCAATTCACATAA
TTTTATGCGCCGATATATGTTACTGCCGTGCTTGCCAGTCATTTTCCAATGCAAAATTTG
CTGAATATGCTGCTCAGGACTTCTTCAGAGATATCCTCCCCGCTGATTGTTGCAAGAGCC
AATGCTGCTTCCCTCAAGTCTATAGTCCAGAAGTCCATCGGCAACTGCTCGTTGATAGAT
GACTCTAGCCTAGTAAAAGCTTGTTGGGTCCTCAATAGCTGTTCAAATTGCCTCTGATTT
ACAGTCCATCGCCGTCCCTCTGATGGTACAGGCTCAAGACCTCTGACCTCTATTATAGCC
TTCTCCAACTCAGAAATGCCTTTACCAGTGACTGCACATGTTTGCACATGTTTTTTGAAA
ACTCCATGGAATTGTTCAAACTGTTCTCCTGAAATAAATGGTGCACAATCTACCTTGTTG
ATTACAAGGACCATTGGCACTGGAGCACCTGAAGATTTCTTACTGATC

consensusID : consensus_6350#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 653
fasta sequence

                              [CACGTGATTGTAACATAATCAGTGGGTCACCAAAAATATGCAGTTTCACGGGCGTGCCAGTCTTTTTTCAATGCAAGAATTGCTGAATATGCTGCTCAGGACTTCTTCAGAGATATCCTCCCCGCTGATTGTTGCAAGAGCCAATGCTGCTTCCCTCAAGTCTATAGTCCAGAAGTCCATCGGCAACTGTTCGGTGATAGATGACTCTAGCCTAGTAAAAGCGTGTTGGGTCCTCAATAGCTGTTCAAATTGCCTCTGATTTACAGTCCATCGCCGTCCCTCTGATGGTACAGGCTCAAGACCTCTGACCTCTATTATAGCCTTCTCCAACTCAGAAATGCCTTTACCAGTGACTGCACATGTTTGCACATGTTTTTTGAAAACTCCATGGAATTGTTCAAACTGTTCTCCTGAAATAAATGGTGCACAATCTACCTTGTTGATTACAAGGACCATTGGCACTGGAGCACCTGAAGATTTCTTACTGATCAACACATGCTCAATAAGTTTAGTGTCATCTTCAGTCCACCCATCAACTGCACTTATTGTCATAATAATCAGATCAGCTCCCAGTGCAGCAGCTTCTGATCGTTCCACACCAATTTTTTCCACGATGTCATCAGTTTCTCTTATACCAGCAGTATCTAGAAGGG]

[-] EMBL CA757293             [CACGTGATTGTAACATAATCAGTGGGTCACCAAAAATATGCAGTTTCACGGGCGTGCCAGTCTTTTTTCAATGCAAGAATTGCTGAATATGCTGCTCAGGACTTCTTCAGAGATATCCTCCCCGCTGATTGTTGCAAGAGCCAATGCTGCTTCCCTCAAGTCTATAGTCCAGAAGTCCATCGGCAACTGTTCGGTGATAGATGACTCTAGCCTAGTAAAAGCGTGTTGGGTCCTCAATAGCTGTTCAAATTGCCTCTGATTTACAGTCCATCGCCGTCCCTCTGATGGTACAGGCTCAAGACCTCTGACCTCTATTATAGCCTTCTCCAACTCAGAAATGCCTTTACCAGTGACTGCACATGTTTGCACATGTTTTTTGAAAACTCCATGGAATTGTTCAAACTGTTCTCCTGAAATAAATGGTGCACAATCTACCTTGTTGATTACAAGGACCATTGGCACTGGAGCACCTGAAGATTTCTTACTGATCAACACATGCTCAATAAGTTTAGTGTCATCTTCAGTCCACCCATCAACTGCACTTATTGTCATAATAATCAGATCAGCTCCCAGTGCAGCAGCTTCTGATCGTTCCACACCAATTTTTTCCACGATGTCATCAGTTTCTCTTATACCAGCAGTATCTAGAAGGG]




>consensus_6350#1
CACGTGATTGTAACATAATCAGTGGGTCACCAAAAATATGCAGTTTCACGGGCGTGCCAG
TCTTTTTTCAATGCAAGAATTGCTGAATATGCTGCTCAGGACTTCTTCAGAGATATCCTC
CCCGCTGATTGTTGCAAGAGCCAATGCTGCTTCCCTCAAGTCTATAGTCCAGAAGTCCAT
CGGCAACTGTTCGGTGATAGATGACTCTAGCCTAGTAAAAGCGTGTTGGGTCCTCAATAG
CTGTTCAAATTGCCTCTGATTTACAGTCCATCGCCGTCCCTCTGATGGTACAGGCTCAAG
ACCTCTGACCTCTATTATAGCCTTCTCCAACTCAGAAATGCCTTTACCAGTGACTGCACA
TGTTTGCACATGTTTTTTGAAAACTCCATGGAATTGTTCAAACTGTTCTCCTGAAATAAA
TGGTGCACAATCTACCTTGTTGATTACAAGGACCATTGGCACTGGAGCACCTGAAGATTT
CTTACTGATCAACACATGCTCAATAAGTTTAGTGTCATCTTCAGTCCACCCATCAACTGC
ACTTATTGTCATAATAATCAGATCAGCTCCCAGTGCAGCAGCTTCTGATCGTTCCACACC
AATTTTTTCCACGATGTCATCAGTTTCTCTTATACCAGCAGTATCTAGAAGGG

consensusID : consensus_6350#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 344
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGATGATCGAAGCAGTACATATGAGTCTTCTTCCATTACAGAGCTATAAACTGCCTCTAAACTGCTCGTGTAGATGAGGCAAGTTTTGCAAGCATATATAGCACAGCTGCTCAAGTGAACGGTGAAAAATCTAGTAAACTCGAAGCCAGTCATTGAGCTCAATCATCAATATGTTCGAGCAAACTAAGTCATGTACTCCTGTTGTGTCTCAAACATGAGTCGGATGGTGACTGACTGGCAATTCACATAATTTTATGCGCCGTATATATGTTACTGCCGCGCATG]

[-] EMBL CF315009             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGATGATCGAAGCAGTACATATGAGTCTTCTTCCATTACAGAGCTATAAACTGCCTCTAAACTGCTCGTGTAGATGAGGCAAGTTTTGCAAGCATATATAGCACAGCTGCTCAAGTGAACGGTGAAAAATCTAGTAAACTCGAAGCCAGTCATTGAGCTCAATCATCAATATGTTCGAGCAAACTAAGTCATGTACTCCTGTTGTGTCTCAAACATGAGTCGGATGGTGACTGACTGGCAATTCACATAATTTTATGCGCCGTATATATGTTACTGCCGCGCATG]




>consensus_6350#2
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAG
GATGATCGAAGCAGTACATATGAGTCTTCTTCCATTACAGAGCTATAAACTGCCTCTAAA
CTGCTCGTGTAGATGAGGCAAGTTTTGCAAGCATATATAGCACAGCTGCTCAAGTGAACG
GTGAAAAATCTAGTAAACTCGAAGCCAGTCATTGAGCTCAATCATCAATATGTTCGAGCA
AACTAAGTCATGTACTCCTGTTGTGTCTCAAACATGAGTCGGATGGTGACTGACTGGCAA
TTCACATAATTTTATGCGCCGTATATATGTTACTGCCGCGCATG

consensusID : consensus_6350#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 312
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACTGACTGGCAATTCACATAATTTTATGCCCCCATATATGTTACTGCCTGTTCAAATTGCAAACAAATCTTTGGCTCAAAACAACTGATTGTAACCATATTCAGTGGATCAACAAAAATATGCAGTTTACCGGGCTTGCCAGTCATTTTCCAATGCAAAATTTGCTGAATATGCTGCTCAAGACTTTTTCAAAAATATCCTCCCCGCTGATTGTTGCAAAAACCAATGCTGCTTCCCTCAAGTCTATAGTCCAAAAATCCATCGGCAACT]

[+] EMBL CF325451             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACTGACTGGCAATTCACATAATTTTATGCCCCCATATATGTTACTGCCTGTTCAAATTGCAAACAAATCTTTGGCTCAAAACAACTGATTGTAACCATATTCAGTGGATCAACAAAAATATGCAGTTTACCGGGCTTGCCAGTCATTTTCCAATGCAAAATTTGCTGAATATGCTGCTCAAGACTTTTTCAAAAATATCCTCCCCGCTGATTGTTGCAAAAACCAATGCTGCTTCCCTCAAGTCTATAGTCCAAAAATCCATCGGCAACT]




>consensus_6350#3
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACTGACTGGCAATTCACA
TAATTTTATGCCCCCATATATGTTACTGCCTGTTCAAATTGCAAACAAATCTTTGGCTCA
AAACAACTGATTGTAACCATATTCAGTGGATCAACAAAAATATGCAGTTTACCGGGCTTG
CCAGTCATTTTCCAATGCAAAATTTGCTGAATATGCTGCTCAAGACTTTTTCAAAAATAT
CCTCCCCGCTGATTGTTGCAAAAACCAATGCTGCTTCCCTCAAGTCTATAGTCCAAAAAT
CCATCGGCAACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6350#1      ------------------------------------------------------------
consensus_6350#3      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACTGACTGGCAATTCACA 60
consensus_6350#0      -----------AAGCACTAGGCATATCCATACATTGTGGCAGTCATTCAAAACAGTTGTG 49
consensus_6350#2      --TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG 58
                                                                                  

consensus_6350#1      ------------------------------------------------------------
consensus_6350#3      TAATTTTATGCCCCCATATATGTTACTGCCTGTTCAAATTGCAAACAAATCTTTGGCTCA 120
consensus_6350#0      AGGATGATCGAAGCAGTACATATGAGT-CTTCTTCCATTACAGAGCTATAAACTGCCTCT 108
consensus_6350#2      AGGATGATCGAAGCAGTACATATGAGT-CTTCTTCCATTACAGAGCTATAAACTGCCTCT 117
                                                                                  

consensus_6350#1      ---CACGTGATTGTAAC-ATAATCAGTGGGTCACCAAAAATATGCAGTTTCACGGGCGTG 56
consensus_6350#3      AAACAACTGATTGTAACCATATTCAGTGGATCAACAAAAATATGCAGTTTACCGGGCTTG 180
consensus_6350#0      AAACTGCTCGT-GTAGATGAGGCAAGT---TTTGCAAGCATATATAGCACAGCTGCTCAA 164
consensus_6350#2      AAACTGCTCGT-GTAGATGAGGCAAGT---TTTGCAAGCATATATAGCACAGCTGCTCAA 173
                         *   *  * ***         ***   *   ***  ****  **     * *     

consensus_6350#1      CCAGTCTTTTTTCAATGCAAGAATTGCTGAATATGCTGCTCAGGACTTCTTCAGAGATAT 116
consensus_6350#3      CCAGTCATTTTCCAATGCAAAATTTGCTGAATATGCTGCTCAAGACTTTTTCAAAAATAT 240
consensus_6350#0      GTGAACGGTGAAAAATCTAGTAAACTCGAAGCCAGTCATT--GAGCTCAATCATCAATAT 222
consensus_6350#2      GTGAACGGTGAAAAATCTAGTAAACTCGAAGCCAGTCATT--GAGCTCAATCATCAATAT 231
                           *  *    ***  *  *    *  *    *    *     **   ***   ****

consensus_6350#1      CCTCCCCGCTGATTGTTGCAAGAGCCAATGCTGCTTCCCTCAAGTCTATAGTCCAGAAGT 176
consensus_6350#3      CCTCCCCGCTGATTGTTGCAAAAACCAATGCTGCTTCCCTCAAGTCTATAGTCCAAAAAT 300
consensus_6350#0      G-TTCGAGCAAACTAAGTCATGTACTCCTGTTGTGTCTCAAACATGAGTCGGATGGTGAC 281
consensus_6350#2      G-TTCGAGCAAACTAAGTCATGTACTCCTGTTGTGTCTCAAACATGAGTCGGATGGTGAC 290
                        * *  **  * *    **    *   ** **  ** *  *  *   * *         

consensus_6350#1      CCATCGGCAACT-GTTCGGTGATAGATGACTCTAGCCTAGTAAAAGCGTGTTGGGTCCTC 235
consensus_6350#3      CCATCGGCAACT------------------------------------------------ 312
consensus_6350#0      TGACTGGCAATTCACATAATTTTATGCGCCG-ATATATGTTACTGCCGTGCTTGCCAGTC 340
consensus_6350#2      TGACTGGCAATTCACATAATTTTATGCGCCGTATATATGTTACTGCCGCGCATG------ 344
                        *  ***** *                                                

consensus_6350#1      AATAGCTGTTCAAATTGCCTCTGATTTACAGTCCATCGCCGTCCCTCTGATGGTACAGGC 295
consensus_6350#3      ------------------------------------------------------------
consensus_6350#0      ATTTTCCAATGCAAAATTTGCTGAATATGCTGCTCAGGACTTCTTCAGAGATATCCTCCC 400
consensus_6350#2      ------------------------------------------------------------
                                                                                  

consensus_6350#1      TCAAGACCTCTGACCTCTATTATAGCCTTCTCCAACTCAGAAATGCCTTTACCAGTGACT 355
consensus_6350#3      ------------------------------------------------------------
consensus_6350#0      CGCTGATTGTTGCAAGAGCCAATGCTGCTTCCCTCAAGTCTATAGTCCAGAAGTCCATCG 460
consensus_6350#2      ------------------------------------------------------------
                                                                                  

consensus_6350#1      GCACATGTTTGCACATGTTTTTTGAAAACTCCATGGAATTGTTCAAACTGTTCTCCTGAA 415
consensus_6350#3      ------------------------------------------------------------
consensus_6350#0      GCAACTGCTCGTTGATAGATGACTCTAGCCTAGTAAAAGCTTGTTGGGTCCTCAATAGCT 520
consensus_6350#2      ------------------------------------------------------------
                                                                                  

consensus_6350#1      ATAAATGGTGCACAATCTACCTTGTTGATTACAAGGACCATTGGCACTGGAGCACCTGAA 475
consensus_6350#3      ------------------------------------------------------------
consensus_6350#0      GTTCAAATTGCCTCTGATTTACAGTCCATCGCCGTCCCTCTGATGGTACAGGCTCAAGAC 580
consensus_6350#2      ------------------------------------------------------------
                                                                                  

consensus_6350#1      GATTTCTTACTGATCAACACATGCTCAATAAGTTTAGTGTCATCTTCAGTCCACCCATCA 535
consensus_6350#3      ------------------------------------------------------------
consensus_6350#0      CTCTGACCTCTATTATAGCCTTCTCCAACTCAGAAATGCCTTTACCAGTGACTGCACATG 640
consensus_6350#2      ------------------------------------------------------------
                                                                                  

consensus_6350#1      ACTGCACTTATTGTCATAATAATCAGATCAGCTCCCAGTGCAGCAGCTTCTGATCGTTCC 595
consensus_6350#3      ------------------------------------------------------------
consensus_6350#0      TTTGCACATGTTTTTTGAAAACTCCATGGAATTGTTCAAACTGTTCTCCTGAAATAAATG 700
consensus_6350#2      ------------------------------------------------------------
                                                                                  

consensus_6350#1      ACACCAATTTTTTCCACGATGTCATCAGTTTCTCTTATACCAGCAGTATCTAGAAGGG-- 653
consensus_6350#3      ------------------------------------------------------------
consensus_6350#0      GTGCACAATCTACCTTGTTGATTACAAGGACCATTGGCACTGGAGCACCTGAAGATTTCT 760
consensus_6350#2      ------------------------------------------------------------
                                                                                  

consensus_6350#1      --------
consensus_6350#3      --------
consensus_6350#0      TACTGATC 768
consensus_6350#2      --------