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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6351#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1079 fasta sequence
[AAAATGGCGCGGCCTCGCTGATGGTGCGCCTCCTCCACCTGCCCCGCGCCGCATCCGCCCCCACCTACCCCCGCCGCCGCCACCACCTTGCCCTCCTCCCCTCGCTCCGGCTACGAGTGCCGGCGCCCGCCGCCGCCGCCGCCATGTCGAGTGCCGCGGCGGCGCAGGAGGTCGCCGACCAGAAGCGCGCGCTGCGGTCCGAGGTGCGGAGGGCGCTCAGGGCCCTCACCCCCGAGCAGCGCGCCAGCGAAGACCAGGCTATTCAAAATGCAATTTTGAACTCTTCTTGGTTCAAAGAAAGCAAGCGGTTATGTGCTTATATAAGCTGTGCACAATTGCGGGAAGTTGATACATCAAAAGTACTGTCAGAAGTTTTATCCCCAAATTCTGAACATGGACATGCAAAGGATCTTTATGTTCCTCGAGTGGAAGATAAGAATCGCAATATGCGGATGCTCAAAATCACTACCATGGATGATTTAGTTAAAAATTCAATGAACATTCTAGAACCATCACCACTTGATGCTAGTGGGAATGCTCGTGAAGAAGTGTTGTCAACCTCTTCCCCTGTTGATCTTTTTCTATTGCCTGGACAAGC-TTTTGATAGGACT-GGACGAAGATTAGGACGTGGTGGAGGGTACTATGACACATTCTTGATGAGATATCAAGAACTTGCTAAAGAGAAAGGGTGGGATCAGCCTCTTCTAGTCGCGCTTTCATACTCGGT-GCAAATTTTGGAGGAAGGCATCATCCCAGTCAACTCAACAGATGTTCCTATTGATGCTCTGGTCTCATCCTCTGGCATCATTCCAATCAGTCCTGCAGCATTGGCGAGGATATAATTGAGCTGATTGGTTTCTGCTTTGCGTTGACAGTCAACCTCTCTTCCCTGAACAACACT--TTTTTAGATAATGCTTCACCAAAGCTGAGAAATTTTTCGATCAAGTGATTTTGTTACGCAATGTATCTGTATTCTGAATATGAATTGATTTTGTCTGCGTATTGTAATGACAACTTTGATCAAACATACAATAAGTTCAATATATATTCATAGAGGACTATGGACCTGAAAAAAAAAA]
[+] EMBL AK067155 [AAAATGGCGCGGCCTCGCTGATGGTGCGCCTCCTCCACCTGCCCCGCGCCGCATCCGCCCCCACCTACCCCCGCCGCCGCCACCACCTTGCCCTCCTCCCCTCGCTCCGGCTACGAGTGCCGGCGCCCGCCGCCGCCGCCGCCATGTCGAGTGCCGCGGCGGCGCAGGAGGTCGCCGACCAGAAGCGCGCGCTGCGGTCCGAGGTGCGGAGGGCGCTCAGGGCCCTCACCCCCGAGCAGCGCGCCAGCGAAGACCAGGCTATTCAAAATGCAATTTTGAACTCTTCTTGGTTCAAAGAAAGCAAGCGGTTATGTGCTTATATAAGCTGTGCACAATTGCGGGAAGTTGATACATCAAAAGTACTGTCAGAAGTTTTATCCCCAAATTCTGAACATGGACATGCAAAGGATCTTTATGTTCCTCGAGTGGAAGATAAGAATCGCAATATGCGGATGCTCAAAATCACTACCATGGATGATTTAGTTAAAAATTCAATGAACATTCTAGAACCATCACCACTTGATGCTAGTGGGAATGCTCGTGAAGAAGTGTTGTCAACCTCTTCCCCTGTTGATCTTTTTCTATTGCCTGGACAAGC TTTTGATAGGACT GGACGAAGATTAGGACGTGGTGGAGGGTACTATGACACATTCTTGATGAGATATCAAGAACTTGCTAAAGAGAAAGGGTGGGATCAGCCTCTTCTAGTCGCGCTTTCATACTCGGT GCAAATTTTGGAGGAAGGCATCATCCCAGTCAACTCAACAGATGTTCCTATTGATGCTCTGG CTCATCCTCTGGCATCATTCCAATCAGTCCTGCAGCATTGGCGAGGATATAATTGAGCTGATTGGTTTCTGCTTTGCGTTGACAGTCAACCTCTCTTCCCTGAACAACACT TTTTTAGATAATGCTTCACCAAAGCTGAGAAATTTTTCGATCAAGTGATTTTGTTACGCAATGTATCTGTATTCTGAATATGAATTGATTTTGTCTGCGTATTGTAATGACAACTTTGATCAAACATACAATAAGTTCAATATATATTCATAGAGGAC ]
[+] EMBL AK106065 [ CCACCTGCCCCGCGCCGCATCCGCCCCCACCTACCCCCGCCGCCGCCACCACCTTGCCCTCCTCCCCTCGCTCCGGCTACGAGTGCCGGCGCCCGCCGCCGCCGCCGCCATGTCGAGTGCCGCGGCGGCGCAGGAGGTCGCCGACCAGAAGCGCGCGCTGCGGTCCGAGGTGCGGAGGGCGCTCAGGGCCCTCACCCCCGAGCAGCGCGCCAGCGAAGACCAGGCTATTCAAAATGCAATTTTGAACTCTTCTTGGTTCAAAGAAAGCAAGCGGTTATGTGCTTATATAAGCTGTGCACAATTGCGGGAAGTTGATACATCAAAAGTACTGTCAGAAGTTTTATCCCCAAATTCTGAACATGGACATGCAAAGGATCTTTATGTTCCTCGAGTGGAAGATAAGAATCGCAATATGCGGATGCTCAAAATCACTACCATGGATGATTTAGTTAAAAATTCAATGAACATTCTAGAACCATCACCACTTGATGCTAGTGGGAATGCTCGTGAAGAAGTGTTGTCAACCTCTTCCCCTGTTGATCTTTTTCTATTGCCTGGACAAGC TTTTGATAGGACT GGACGAAGATTAGGACGTGGTGGAGGGTACTATGACACATTCTTGATGAGATATCAAGAACTTGCTAAAGAGAAAGGGTGGGATCAGCCTCTTCTAGTCGCGCTTTCATACTCGGT GCAAATTTTGGAGGAAGGCATCATCCCAGTCAACTCAACAGATGTTCCTATTGATGCTCTGGTCTCATCCTCTGGCATCATTCCAATCAGTCCTGCAGCATTGGCGAGGATATAATTGAGCTGATTGGTTTCTGCTTTGCGTTGACAGTCAACCTCTCTTCCCTGAACAACACT TTTTTAGATAATGCTTCACCAAAGCTGAGAAATTTTTCGATCAAGTGATTTTGTTACGCAATGTATCTGTATTCTGAATATGAATTGATTTTGTCTGCGTATTGTAATGACAACTTTGATCAAACATACAATAAGTTCAATATATATTCATAGAGG ]
[+] EMBL BI806469 [ CTNCCCCTGTTGATCTTTTTCTATTGCCTGGACAAGCTTTTTGATAGGACTGGGACGAAGATTAGGACGT GTGGAGGGTACTATGACACATTCTTGATGAGATATCAAGAACTTGCTAAAGAGAAAGGGTGGGATCAGCCTCTTCTAGTCGCGCTTTCATACTCGGTCGCAAATTTTGGAGGAAGGCATCATCCCAGTCAACTCAACAGATGTTCCTATTGATGCTCTGGTCTCATCCTCTGGCATCATTCC ATCAGTCCTGCAGCATTGGCGAGGATATAATTGAGCTGATTGGTTTCTGCTTTGCGTTGACAGTCAACCTCTCTTCCCTGAAC ACACTNCNCNTTAGATAATGCTTCACCTAAGCTGAGAAATTTTTCGATCAAGTGATTTTGTTAC C ATGTATCTGTATTCTGAATATGAATTGATTTTGTCTGCGTATTGTAATGAC ACTTTGATC AACATAC ATAAGTTC ATATATATTCATAGAGGCCTATGGACCTGAAAAAAAAAA]
consensusID : consensus_6351#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1036 fasta sequence
[AAATGGCGCGGCCTCGCTGATGGTGCGCCTCCTCCACCTGCCCCGCGCCGCATCCGCCCCCACCTACCCCCGCCGCCGCCACCACCTTGCCCTCCTCCCCTCGCTCCGGCTACGAGTGCCGGCGCCCGCCGCCGCCGCCGCCATGTCGAGTGCCGCGGCGGCGCAGGAGGTCGCCGACCAGAAGCGCGCGCTGCGGTCCGAGGTGCGGAGGGCGCTCAGGGCCCTCACCCCCGAGCAGCGCGCCAGCGAAGACCAGGCTATTCAAAATGCAATTTTGAACTCTTCTTGGTTCAAAGAAAGCAAGCGGTTATGTGCTTATATAAGCTGTGCACAATTGCGGGAAGTTGATACATCAAAAGTACTGTCAGAAGTTTTATCCCCAAATTCTGAACATGGACATGCAAAGGATCTTTATGTTCCTCGAGTGGAAGATAAGAATCGCAATATGCGGATGCTCAAAATCACTACCATGGATGATTTAGTTAAAAATTCAATGAACATTCTAGAACCATCACCACTTGATGCTAGTGGGAATGCTCGTGAAGAAGGTATGAAGTTTATCTAGTGTTGTCAACCTCTTCCCCTGTTGATCTTTTTCTATTGCCTGGACAAGCTTTTGATAGGACTGGACGAAGATTAGGACGTGGTGGAGGGTACTATGACACATTCTTGATGAGATATCAAGAACTTGCTAAAGAGAAAGGGTGGGATCAGCCTCTTCTAGTCGCGCTTTCATACTCGGTGCAAATTTTGGAGGAAGGCATCATCCCAGTCAACTCAACAGATGTTCCTATTGATGCTCTGGTCTCATCCTCTGGCATCATTCCAATCAGTCCTGCAGCATTGGCGAGGATATAATTGAGCTGATTGGTTTCTGCTTTGCGTTGACAGTCAACCTCTCTTCCCTGAACAACACTTTTTTAGATAATGCTTCACCAAAGCTGAGAAATTTTTCGATCAAGTGATTTTGTTACGCAATGTATCTGTATTCTGAATATGAATTGATTTTGTCTGCGTATTGTAATGACAACTTTGA]
[+] EMBL AK060488 [AAATGGCGCGGCCTCGCTGATGGTGCGCCTCCTCCACCTGCCCCGCGCCGCATCCGCCCCCACCTACCCCCGCCGCCGCCACCACCTTGCCCTCCTCCCCTCGCTCCGGCTACGAGTGCCGGCGCCCGCCGCCGCCGCCGCCATGTCGAGTGCCGCGGCGGCGCAGGAGGTCGCCGACCAGAAGCGCGCGCTGCGGTCCGAGGTGCGGAGGGCGCTCAGGGCCCTCACCCCCGAGCAGCGCGCCAGCGAAGACCAGGCTATTCAAAATGCAATTTTGAACTCTTCTTGGTTCAAAGAAAGCAAGCGGTTATGTGCTTATATAAGCTGTGCACAATTGCGGGAAGTTGATACATCAAAAGTACTGTCAGAAGTTTTATCCCCAAATTCTGAACATGGACATGCAAAGGATCTTTATGTTCCTCGAGTGGAAGATAAGAATCGCAATATGCGGATGCTCAAAATCACTACCATGGATGATTTAGTTAAAAATTCAATGAACATTCTAGAACCATCACCACTTGATGCTAGTGGGAATGCTCGTGAAGAAGGTATGAAGTTTATCTAGTGTTGTCAACCTCTTCCCCTGTTGATCTTTTTCTATTGCCTGGACAAGCTTTTGATAGGACTGGACGAAGATTAGGACGTGGTGGAGGGTACTATGACACATTCTTGATGAGATATCAAGAACTTGCTAAAGAGAAAGGGTGGGATCAGCCTCTTCTAGTCGCGCTTTCATACTCGGTGCAAATTTTGGAGGAAGGCATCATCCCAGTCAACTCAACAGATGTTCCTATTGATGCTCTGGTCTCATCCTCTGGCATCATTCCAATCAGTCCTGCAGCATTGGCGAGGATATAATTGAGCTGATTGGTTTCTGCTTTGCGTTGACAGTCAACCTCTCTTCCCTGAACAACACTTTTTTAGATAATGCTTCACCAAAGCTGAGAAATTTTTCGATCAAGTGATTTTGTTACGCAATGTATCTGTATTCTGAATATGAATTGATTTTGTCTGCGTATTGTAATGACAACTTTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6351#0 AAAATGGCGCGGCCTCGCTGATGGTGCGCCTCCTCCACCTGCCCCGCGCCGCATCCGCCC 60
consensus_6351#1 -AAATGGCGCGGCCTCGCTGATGGTGCGCCTCCTCCACCTGCCCCGCGCCGCATCCGCCC 59
***********************************************************
consensus_6351#0 CCACCTACCCCCGCCGCCGCCACCACCTTGCCCTCCTCCCCTCGCTCCGGCTACGAGTGC 120
consensus_6351#1 CCACCTACCCCCGCCGCCGCCACCACCTTGCCCTCCTCCCCTCGCTCCGGCTACGAGTGC 119
************************************************************
consensus_6351#0 CGGCGCCCGCCGCCGCCGCCGCCATGTCGAGTGCCGCGGCGGCGCAGGAGGTCGCCGACC 180
consensus_6351#1 CGGCGCCCGCCGCCGCCGCCGCCATGTCGAGTGCCGCGGCGGCGCAGGAGGTCGCCGACC 179
************************************************************
consensus_6351#0 AGAAGCGCGCGCTGCGGTCCGAGGTGCGGAGGGCGCTCAGGGCCCTCACCCCCGAGCAGC 240
consensus_6351#1 AGAAGCGCGCGCTGCGGTCCGAGGTGCGGAGGGCGCTCAGGGCCCTCACCCCCGAGCAGC 239
************************************************************
consensus_6351#0 GCGCCAGCGAAGACCAGGCTATTCAAAATGCAATTTTGAACTCTTCTTGGTTCAAAGAAA 300
consensus_6351#1 GCGCCAGCGAAGACCAGGCTATTCAAAATGCAATTTTGAACTCTTCTTGGTTCAAAGAAA 299
************************************************************
consensus_6351#0 GCAAGCGGTTATGTGCTTATATAAGCTGTGCACAATTGCGGGAAGTTGATACATCAAAAG 360
consensus_6351#1 GCAAGCGGTTATGTGCTTATATAAGCTGTGCACAATTGCGGGAAGTTGATACATCAAAAG 359
************************************************************
consensus_6351#0 TACTGTCAGAAGTTTTATCCCCAAATTCTGAACATGGACATGCAAAGGATCTTTATGTTC 420
consensus_6351#1 TACTGTCAGAAGTTTTATCCCCAAATTCTGAACATGGACATGCAAAGGATCTTTATGTTC 419
************************************************************
consensus_6351#0 CTCGAGTGGAAGATAAGAATCGCAATATGCGGATGCTCAAAATCACTACCATGGATGATT 480
consensus_6351#1 CTCGAGTGGAAGATAAGAATCGCAATATGCGGATGCTCAAAATCACTACCATGGATGATT 479
************************************************************
consensus_6351#0 TAGTTAAAAATTCAATGAACATTCTAGAACCATCACCACTTGATGCTAGTGGGAATGCTC 540
consensus_6351#1 TAGTTAAAAATTCAATGAACATTCTAGAACCATCACCACTTGATGCTAGTGGGAATGCTC 539
************************************************************
consensus_6351#0 GTGAAGAAG-----------------TGTTGTCAACCTCTTCCCCTGTTGATCTTTTTCT 583
consensus_6351#1 GTGAAGAAGGTATGAAGTTTATCTAGTGTTGTCAACCTCTTCCCCTGTTGATCTTTTTCT 599
********* **********************************
consensus_6351#0 ATTGCCTGGACAAGCTTTTGATAGGACTGGACGAAGATTAGGACGTGGTGGAGGGTACTA 643
consensus_6351#1 ATTGCCTGGACAAGCTTTTGATAGGACTGGACGAAGATTAGGACGTGGTGGAGGGTACTA 659
************************************************************
consensus_6351#0 TGACACATTCTTGATGAGATATCAAGAACTTGCTAAAGAGAAAGGGTGGGATCAGCCTCT 703
consensus_6351#1 TGACACATTCTTGATGAGATATCAAGAACTTGCTAAAGAGAAAGGGTGGGATCAGCCTCT 719
************************************************************
consensus_6351#0 TCTAGTCGCGCTTTCATACTCGGTGCAAATTTTGGAGGAAGGCATCATCCCAGTCAACTC 763
consensus_6351#1 TCTAGTCGCGCTTTCATACTCGGTGCAAATTTTGGAGGAAGGCATCATCCCAGTCAACTC 779
************************************************************
consensus_6351#0 AACAGATGTTCCTATTGATGCTCTGGTCTCATCCTCTGGCATCATTCCAATCAGTCCTGC 823
consensus_6351#1 AACAGATGTTCCTATTGATGCTCTGGTCTCATCCTCTGGCATCATTCCAATCAGTCCTGC 839
************************************************************
consensus_6351#0 AGCATTGGCGAGGATATAATTGAGCTGATTGGTTTCTGCTTTGCGTTGACAGTCAACCTC 883
consensus_6351#1 AGCATTGGCGAGGATATAATTGAGCTGATTGGTTTCTGCTTTGCGTTGACAGTCAACCTC 899
************************************************************
consensus_6351#0 TCTTCCCTGAACAACACTTTTTTAGATAATGCTTCACCAAAGCTGAGAAATTTTTCGATC 943
consensus_6351#1 TCTTCCCTGAACAACACTTTTTTAGATAATGCTTCACCAAAGCTGAGAAATTTTTCGATC 959
************************************************************
consensus_6351#0 AAGTGATTTTGTTACGCAATGTATCTGTATTCTGAATATGAATTGATTTTGTCTGCGTAT 1003
consensus_6351#1 AAGTGATTTTGTTACGCAATGTATCTGTATTCTGAATATGAATTGATTTTGTCTGCGTAT 1019
************************************************************
consensus_6351#0 TGTAATGACAACTTTGATCAAACATACAATAAGTTCAATATATATTCATAGAGGACTATG 1063
consensus_6351#1 TGTAATGACAACTTTGA------------------------------------------- 1036
*****************
consensus_6351#0 GACCTGAAAAAAAAAA 1079
consensus_6351#1 ----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||