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Oryza sativa
cluster # 6355 cluster # 6355       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6355#0 length = 1334 sequences # 2  
consensus_6355#1 length = 236 sequences # 2  

consensusID : consensus_6355#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1334
fasta sequence
                              [CGCCCACTGGGACTTCCCCTCCCTTTCCTAGTTTCCTCCCAATCGTGACCAAATTCCGCCAGATCGCCGGTGGTCTCCTTCGCCGGCCGCCTACAGGAACCGCTCAACCGCGGGCACCAGCTACCGCCGCCCGCCTTCTTCCTCCCTCGGAGTCCCCAATACCACAACCCTTGCCGCAGAGAAAGGCGCTGTAGTTGGTGGTGGTAGAGCTGGCTGTGGAGGCGAGGGAGCGAGGATAGGGAGGGGATGACTAGCCTGTCAATTACGGTGATGACGCTCAACCTACACGAGGGGGAGCAACCGAGCGAGAGCCCCAACAGCTGGGAGAGGCGCCGCGACATCTGCGTCAGCGTCATCACCAGCTACTCCCCCACCATCCTCTGCACCCAGCAAGGATTGAGGTGGCAGCTGGACTACCTACAGCAGTGCCTGCCTGGTTATGAGCAATTTGGGATTTCAAGAAAAGGCTCAGAGGATAACACTGATGAATATTGTACAATATTCTATGAAAAAGAAAAGGTGGAGCTTACAGAAGGTGGTACCTTTTGGTTGTCAGAATCTCCTTCAGTGCCTGGAAGCGTTTCATGGGGGGCAACTGCACCCTGCATTGCTACATGGGCAACACATTTCAACTCAAACAAGTAGAA-CCACCTGGGTTCAGCTTCCAGATTGTAAATACAAACCTTGATGAAGATAGCCCTCGAGCTCGTAGACGAAGTGCTTTGCTAACGTGGCAACATATAGCATCGTTGCCACCCAATTTACCAGTGATCTATTGTGGTGGATTCAACACACAG-AAGGAGTCTATGACTGGGCGGTTTTTGCTCGGTAGATCCAGAGAACAT-GGTGTTGTGGGTGATATGAGAGATGCTTGGCCAAATGCTCGTGTCCGCAAAAATGTTTCACTCATACATACGTATCATGGATTTAAAGGGGAGAAACAAGGTGCCCTAGAGTTTCTGAAATTAATATTTAGAGCACTTTGTCTCTGCTGGGATCGACAGACTCAGGACTTGCATATTGACTGGATACTGTTTAGAGGGCGTCCACTGGTTCCTGCACTCTGTGAAGTCATAAATGACAATATTGATGGTGTTTATCCTTCTTCACATTTTCCCATATTTGCTGAATTTTTGCTTCCACGCTCCGTCCGCCTAGTGGAGACACCATAATCGTTTTGTGTGTTCTTTTTGCCATACCATTTCTTTTTCATCATTAATGTTTCTTTTTGGTTAAATTGTTTGTTTATTTTTATTTTCTCTCTGTCGCGTTTTGTTTGCCTTGATCATACACGTTACATGTACTCCTGTAGTCCTGTGCAGAATCTGGGCCAA]

[+] EMBL AK070566             [CGCCCACTGGGACTTCCCCTCCCTTTCCTAGTTTCCTCCCAATCGTGACCAAATTCCGCCAGATCGCCGGTGGTCTCCTTCGCCGGCCGCCTACAGGAACCGCTCAACCGCGGGCACCAGCTACCGCCGCCCGCCTTCTTCCTCCCTCGGAGTCCCCAATACCACAACCCTTGCCGCAGAGAAAGGCGCTGTAGTTGGTGGTGGTAGAGCTGGCTGTGGAGGCGAGGGAGCGAGGATAGGGAGGGGATGACTAGCCTGTCAATTACGGTGATGACGCTCAACCTACACGAGGGGGAGCAACCGAGCGAGAGCCCCAACAGCTGGGAGAGGCGCCGCGACATCTGCGTCAGCGTCATCACCAGCTACTCCCCCACCATCCTCTGCACCCAGCAAGGATTGAGGTGGCAGCTGGACTACCTACAGCAGTGCCTGCCTGGTTATGAGCAATTTGGGATTTCAAGAAAAGGCTCAGAGGATAACACTGATGAATATTGTACAATATTCTATGAAAAAGAAAAGGTGGAGCTTACAGAAGGTGGTACCTTTTGGTTGTCAGAATCTCCTTCAGTGCCTGGAAGCGTTTCATGGGGGGCAACTGCACCCTGCATTGCTACATGGGCAACACATTTCAACTCAAACAAGTAGAA CCACCTGGGTTCAGCTTCCAGATTGTAAATACAAACCTTGATGAAGATAGCCCTCGAGCTCGTAGACGAAGTGCTTTGCTAACGTGGCAACATATAGCATCGTTGCCACCCAATTTACCAGTGATCTATTGTGGTGGATTCAACACACAG AAGGAGTCTATGACTGGGCGGTTTTTGCTCGGTAGATCCAGAGAACAT GGTGTTGTGGGTGATATGAGAGATGCTTGGCCAAATGCTCGTGTCCGCAAAAATGTTTCACTCATACATACGTATCATGGATTTAAAGGGGAGAAACAAGGTGCCCTAGAGTTTCTGAAATTAATATTTAGAGCACTTTGTCTCTGCTGGGATCGACAGACTCAGGACTTGCATATTGACTGGATACTGTTTAGAGGGCGTCCACTGGTTCCTGCACTCTGTGAAGTCATAAATGACAATATTGATGGTGTTTATCCTTCTTCACATTTTCCCATATTTGCTGAATTTTTGCTTCCACGCTCCGTCCGCCTAGTGGAGACACCATAATCGTTTTGTGTGTTCTTTTTGCCATACCATTTCTTTTTCATCATTAATGTTTCTTTTTGGTTAAATTGTTTGTTTATTTTTATTTTCTCTCTGTCGCGTTTTGTTTGCCTTGATCATACACGTTACATGTACTCCTGTAGTCCTGTGCAGAATCTGGGCCAA]
[+] EMBL CA763827             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        aaGGGGGGCAACTGCACCCTGCATTGCTACATGGGCA  ACATTTCAACTCAAACAAGTAGAACCCACCTGGGTTCAGCTTCCAGATTGTAAATACAAACCTTGATGAAGATAGCCCTCGAGCTCGTAGACGAAGTGCTTTGCTAACGTGGCAACATATAGCATCGTTGCCACCCAATTTACCAGTGATCTATTGTGGTGGATTCAACACACAGNAAGGAGTCTATGATNGGGCGGTTTTTGCTCGGTAGATCCAGAGAACATGGGTGTTGTGGGTGATATGAGAGATGCTTGGCCAAATGCTCGTGTCCGCAAAAATGTTTCACTCATACATACGTATCATGGATTTAAAGGGGAGAAACAAGGTGCCCTAGAGTTTCTGAAATTAATATTTAGAGCACTTTGTCTCTGCTGGGATCGACAG                                                                                                                                                                                                                                                                                                                                          ]


>consensus_6355#0 CGCCCACTGGGACTTCCCCTCCCTTTCCTAGTTTCCTCCCAATCGTGACCAAATTCCGCC AGATCGCCGGTGGTCTCCTTCGCCGGCCGCCTACAGGAACCGCTCAACCGCGGGCACCAG CTACCGCCGCCCGCCTTCTTCCTCCCTCGGAGTCCCCAATACCACAACCCTTGCCGCAGA GAAAGGCGCTGTAGTTGGTGGTGGTAGAGCTGGCTGTGGAGGCGAGGGAGCGAGGATAGG GAGGGGATGACTAGCCTGTCAATTACGGTGATGACGCTCAACCTACACGAGGGGGAGCAA CCGAGCGAGAGCCCCAACAGCTGGGAGAGGCGCCGCGACATCTGCGTCAGCGTCATCACC AGCTACTCCCCCACCATCCTCTGCACCCAGCAAGGATTGAGGTGGCAGCTGGACTACCTA CAGCAGTGCCTGCCTGGTTATGAGCAATTTGGGATTTCAAGAAAAGGCTCAGAGGATAAC ACTGATGAATATTGTACAATATTCTATGAAAAAGAAAAGGTGGAGCTTACAGAAGGTGGT ACCTTTTGGTTGTCAGAATCTCCTTCAGTGCCTGGAAGCGTTTCATGGGGGGCAACTGCA CCCTGCATTGCTACATGGGCAACACATTTCAACTCAAACAAGTAGAACCACCTGGGTTCA GCTTCCAGATTGTAAATACAAACCTTGATGAAGATAGCCCTCGAGCTCGTAGACGAAGTG CTTTGCTAACGTGGCAACATATAGCATCGTTGCCACCCAATTTACCAGTGATCTATTGTG GTGGATTCAACACACAGAAGGAGTCTATGACTGGGCGGTTTTTGCTCGGTAGATCCAGAG AACATGGTGTTGTGGGTGATATGAGAGATGCTTGGCCAAATGCTCGTGTCCGCAAAAATG TTTCACTCATACATACGTATCATGGATTTAAAGGGGAGAAACAAGGTGCCCTAGAGTTTC TGAAATTAATATTTAGAGCACTTTGTCTCTGCTGGGATCGACAGACTCAGGACTTGCATA TTGACTGGATACTGTTTAGAGGGCGTCCACTGGTTCCTGCACTCTGTGAAGTCATAAATG ACAATATTGATGGTGTTTATCCTTCTTCACATTTTCCCATATTTGCTGAATTTTTGCTTC CACGCTCCGTCCGCCTAGTGGAGACACCATAATCGTTTTGTGTGTTCTTTTTGCCATACC ATTTCTTTTTCATCATTAATGTTTCTTTTTGGTTAAATTGTTTGTTTATTTTTATTTTCT CTCTGTCGCGTTTTGTTTGCCTTGATCATACACGTTACATGTACTCCTGTAGTCCTGTGC AGAATCTGGGCCAA



consensusID : consensus_6355#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 236
fasta sequence
                              [GAGGGCGTCCACTGGTTCCTGCACTCTGTGAAGTCATAAATGACAATATTGATGGTGTTTATCCTTCTTCACATTTTCCCATATTTGCTGAATTTTTGCTTCCACGCTCCGTCCGCCTAGTGGAGACACCATAATCGTTTTGTGTGTTCTTTTTGCCAAACCATTTCTTTTTCATCATTAATGTTTCTTTTTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACT]

[-] EMBL CA756365             [GAGGGCGTCCACTGGTTCCTGCACTCTGTGAAGTCATAAATGACAATATTGATGGTGTTTATCCTTCTTCACATTTTCCCATATTTGCTGAATTTTTGCTTCCACGCTCCGTCCGCCTAGTGGAGACACCATAATCGTTTTGTGTGTTCTTTTTGCCAAACCATTTCTTTTTCATCATTAATGTTTCTTTTTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACT]
[-] EMBL BE040503             [GAGGGCGTCCACTGGTTCCTGCACTCTGTGAAGTCATAAATGACAATATTGATGGTGTTTATCCTTCTTCACATTTTCCCATATTTGCTGAATTTTTGCTTCCACGCTCCGTCCGCCTAGTGGAGACACCATAATCGTTTTGTGTGTTCTTTTTGCCAAACCATTTCTTTTTCATCATTAATGTTTCTTTTTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACT]


>consensus_6355#1 GAGGGCGTCCACTGGTTCCTGCACTCTGTGAAGTCATAAATGACAATATTGATGGTGTTT ATCCTTCTTCACATTTTCCCATATTTGCTGAATTTTTGCTTCCACGCTCCGTCCGCCTAG TGGAGACACCATAATCGTTTTGTGTGTTCTTTTTGCCAAACCATTTCTTTTTCATCATTA ATGTTTCTTTTTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6355#0      CGCCCACTGGGACTTCCCCTCCCTTTCCTAGTTTCCTCCCAATCGTGACCAAATTCCGCC 60
consensus_6355#1      ------------------------------------------------------------
                                                                                  

consensus_6355#0      AGATCGCCGGTGGTCTCCTTCGCCGGCCGCCTACAGGAACCGCTCAACCGCGGGCACCAG 120
consensus_6355#1      ------------------------------------------------------------
                                                                                  

consensus_6355#0      CTACCGCCGCCCGCCTTCTTCCTCCCTCGGAGTCCCCAATACCACAACCCTTGCCGCAGA 180
consensus_6355#1      ------------------------------------------------------------
                                                                                  

consensus_6355#0      GAAAGGCGCTGTAGTTGGTGGTGGTAGAGCTGGCTGTGGAGGCGAGGGAGCGAGGATAGG 240
consensus_6355#1      ------------------------------------------------------------
                                                                                  

consensus_6355#0      GAGGGGATGACTAGCCTGTCAATTACGGTGATGACGCTCAACCTACACGAGGGGGAGCAA 300
consensus_6355#1      ------------------------------------------------------------
                                                                                  

consensus_6355#0      CCGAGCGAGAGCCCCAACAGCTGGGAGAGGCGCCGCGACATCTGCGTCAGCGTCATCACC 360
consensus_6355#1      ------------------------------------------------------------
                                                                                  

consensus_6355#0      AGCTACTCCCCCACCATCCTCTGCACCCAGCAAGGATTGAGGTGGCAGCTGGACTACCTA 420
consensus_6355#1      ------------------------------------------------------------
                                                                                  

consensus_6355#0      CAGCAGTGCCTGCCTGGTTATGAGCAATTTGGGATTTCAAGAAAAGGCTCAGAGGATAAC 480
consensus_6355#1      ------------------------------------------------------------
                                                                                  

consensus_6355#0      ACTGATGAATATTGTACAATATTCTATGAAAAAGAAAAGGTGGAGCTTACAGAAGGTGGT 540
consensus_6355#1      ------------------------------------------------------------
                                                                                  

consensus_6355#0      ACCTTTTGGTTGTCAGAATCTCCTTCAGTGCCTGGAAGCGTTTCATGGGGGGCAACTGCA 600
consensus_6355#1      ------------------------------------------------------------
                                                                                  

consensus_6355#0      CCCTGCATTGCTACATGGGCAACACATTTCAACTCAAACAAGTAGAACCACCTGGGTTCA 660
consensus_6355#1      ------------------------------------------------------------
                                                                                  

consensus_6355#0      GCTTCCAGATTGTAAATACAAACCTTGATGAAGATAGCCCTCGAGCTCGTAGACGAAGTG 720
consensus_6355#1      ------------------------------------------------------------
                                                                                  

consensus_6355#0      CTTTGCTAACGTGGCAACATATAGCATCGTTGCCACCCAATTTACCAGTGATCTATTGTG 780
consensus_6355#1      ------------------------------------------------------------
                                                                                  

consensus_6355#0      GTGGATTCAACACACAGAAGGAGTCTATGACTGGGCGGTTTTTGCTCGGTAGATCCAGAG 840
consensus_6355#1      ------------------------------------------------------------
                                                                                  

consensus_6355#0      AACATGGTGTTGTGGGTGATATGAGAGATGCTTGGCCAAATGCTCGTGTCCGCAAAAATG 900
consensus_6355#1      ------------------------------------------------------------
                                                                                  

consensus_6355#0      TTTCACTCATACATACGTATCATGGATTTAAAGGGGAGAAACAAGGTGCCCTAGAGTTTC 960
consensus_6355#1      ------------------------------------------------------------
                                                                                  

consensus_6355#0      TGAAATTAATATTTAGAGCACTTTGTCTCTGCTGGGATCGACAGACTCAGGACTTGCATA 1020
consensus_6355#1      ------------------------------------------------------------
                                                                                  

consensus_6355#0      TTGACTGGATACTGTTTAGAGGGCGTCCACTGGTTCCTGCACTCTGTGAAGTCATAAATG 1080
consensus_6355#1      ------------------GAGGGCGTCCACTGGTTCCTGCACTCTGTGAAGTCATAAATG 42
                                        ******************************************

consensus_6355#0      ACAATATTGATGGTGTTTATCCTTCTTCACATTTTCCCATATTTGCTGAATTTTTGCTTC 1140
consensus_6355#1      ACAATATTGATGGTGTTTATCCTTCTTCACATTTTCCCATATTTGCTGAATTTTTGCTTC 102
                      ************************************************************

consensus_6355#0      CACGCTCCGTCCGCCTAGTGGAGACACCATAATCGTTTTGTGTGTTCTTTTTGCCATACC 1200
consensus_6355#1      CACGCTCCGTCCGCCTAGTGGAGACACCATAATCGTTTTGTGTGTTCTTTTTGCCAAACC 162
                      ******************************************************** ***

consensus_6355#0      ATTTCTTTTTCATCATTAATGTTTCTTTTTGGTTAAATTGTTTGTTTATTTTTATTTTCT 1260
consensus_6355#1      ATTTCTTTTTCATCATTAATGTTTCTTTTTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAA 222
                      *************************************          *     *      

consensus_6355#0      CTCTG-TCGCGTTTTGTTTGCCTTGATCATACACGTTACATGTACTCCTGTAGTCCTGTG 1319
consensus_6355#1      AAAAACTCGAGACT---------------------------------------------- 236
                            *** *  *                                              

consensus_6355#0      CAGAATCTGGGCCAA 1334
consensus_6355#1      ---------------
                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)