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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6355#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1334 fasta sequence
[CGCCCACTGGGACTTCCCCTCCCTTTCCTAGTTTCCTCCCAATCGTGACCAAATTCCGCCAGATCGCCGGTGGTCTCCTTCGCCGGCCGCCTACAGGAACCGCTCAACCGCGGGCACCAGCTACCGCCGCCCGCCTTCTTCCTCCCTCGGAGTCCCCAATACCACAACCCTTGCCGCAGAGAAAGGCGCTGTAGTTGGTGGTGGTAGAGCTGGCTGTGGAGGCGAGGGAGCGAGGATAGGGAGGGGATGACTAGCCTGTCAATTACGGTGATGACGCTCAACCTACACGAGGGGGAGCAACCGAGCGAGAGCCCCAACAGCTGGGAGAGGCGCCGCGACATCTGCGTCAGCGTCATCACCAGCTACTCCCCCACCATCCTCTGCACCCAGCAAGGATTGAGGTGGCAGCTGGACTACCTACAGCAGTGCCTGCCTGGTTATGAGCAATTTGGGATTTCAAGAAAAGGCTCAGAGGATAACACTGATGAATATTGTACAATATTCTATGAAAAAGAAAAGGTGGAGCTTACAGAAGGTGGTACCTTTTGGTTGTCAGAATCTCCTTCAGTGCCTGGAAGCGTTTCATGGGGGGCAACTGCACCCTGCATTGCTACATGGGCAACACATTTCAACTCAAACAAGTAGAA-CCACCTGGGTTCAGCTTCCAGATTGTAAATACAAACCTTGATGAAGATAGCCCTCGAGCTCGTAGACGAAGTGCTTTGCTAACGTGGCAACATATAGCATCGTTGCCACCCAATTTACCAGTGATCTATTGTGGTGGATTCAACACACAG-AAGGAGTCTATGACTGGGCGGTTTTTGCTCGGTAGATCCAGAGAACAT-GGTGTTGTGGGTGATATGAGAGATGCTTGGCCAAATGCTCGTGTCCGCAAAAATGTTTCACTCATACATACGTATCATGGATTTAAAGGGGAGAAACAAGGTGCCCTAGAGTTTCTGAAATTAATATTTAGAGCACTTTGTCTCTGCTGGGATCGACAGACTCAGGACTTGCATATTGACTGGATACTGTTTAGAGGGCGTCCACTGGTTCCTGCACTCTGTGAAGTCATAAATGACAATATTGATGGTGTTTATCCTTCTTCACATTTTCCCATATTTGCTGAATTTTTGCTTCCACGCTCCGTCCGCCTAGTGGAGACACCATAATCGTTTTGTGTGTTCTTTTTGCCATACCATTTCTTTTTCATCATTAATGTTTCTTTTTGGTTAAATTGTTTGTTTATTTTTATTTTCTCTCTGTCGCGTTTTGTTTGCCTTGATCATACACGTTACATGTACTCCTGTAGTCCTGTGCAGAATCTGGGCCAA]
[+] EMBL AK070566 [CGCCCACTGGGACTTCCCCTCCCTTTCCTAGTTTCCTCCCAATCGTGACCAAATTCCGCCAGATCGCCGGTGGTCTCCTTCGCCGGCCGCCTACAGGAACCGCTCAACCGCGGGCACCAGCTACCGCCGCCCGCCTTCTTCCTCCCTCGGAGTCCCCAATACCACAACCCTTGCCGCAGAGAAAGGCGCTGTAGTTGGTGGTGGTAGAGCTGGCTGTGGAGGCGAGGGAGCGAGGATAGGGAGGGGATGACTAGCCTGTCAATTACGGTGATGACGCTCAACCTACACGAGGGGGAGCAACCGAGCGAGAGCCCCAACAGCTGGGAGAGGCGCCGCGACATCTGCGTCAGCGTCATCACCAGCTACTCCCCCACCATCCTCTGCACCCAGCAAGGATTGAGGTGGCAGCTGGACTACCTACAGCAGTGCCTGCCTGGTTATGAGCAATTTGGGATTTCAAGAAAAGGCTCAGAGGATAACACTGATGAATATTGTACAATATTCTATGAAAAAGAAAAGGTGGAGCTTACAGAAGGTGGTACCTTTTGGTTGTCAGAATCTCCTTCAGTGCCTGGAAGCGTTTCATGGGGGGCAACTGCACCCTGCATTGCTACATGGGCAACACATTTCAACTCAAACAAGTAGAA CCACCTGGGTTCAGCTTCCAGATTGTAAATACAAACCTTGATGAAGATAGCCCTCGAGCTCGTAGACGAAGTGCTTTGCTAACGTGGCAACATATAGCATCGTTGCCACCCAATTTACCAGTGATCTATTGTGGTGGATTCAACACACAG AAGGAGTCTATGACTGGGCGGTTTTTGCTCGGTAGATCCAGAGAACAT GGTGTTGTGGGTGATATGAGAGATGCTTGGCCAAATGCTCGTGTCCGCAAAAATGTTTCACTCATACATACGTATCATGGATTTAAAGGGGAGAAACAAGGTGCCCTAGAGTTTCTGAAATTAATATTTAGAGCACTTTGTCTCTGCTGGGATCGACAGACTCAGGACTTGCATATTGACTGGATACTGTTTAGAGGGCGTCCACTGGTTCCTGCACTCTGTGAAGTCATAAATGACAATATTGATGGTGTTTATCCTTCTTCACATTTTCCCATATTTGCTGAATTTTTGCTTCCACGCTCCGTCCGCCTAGTGGAGACACCATAATCGTTTTGTGTGTTCTTTTTGCCATACCATTTCTTTTTCATCATTAATGTTTCTTTTTGGTTAAATTGTTTGTTTATTTTTATTTTCTCTCTGTCGCGTTTTGTTTGCCTTGATCATACACGTTACATGTACTCCTGTAGTCCTGTGCAGAATCTGGGCCAA]
[+] EMBL CA763827 [ aaGGGGGGCAACTGCACCCTGCATTGCTACATGGGCA ACATTTCAACTCAAACAAGTAGAACCCACCTGGGTTCAGCTTCCAGATTGTAAATACAAACCTTGATGAAGATAGCCCTCGAGCTCGTAGACGAAGTGCTTTGCTAACGTGGCAACATATAGCATCGTTGCCACCCAATTTACCAGTGATCTATTGTGGTGGATTCAACACACAGNAAGGAGTCTATGATNGGGCGGTTTTTGCTCGGTAGATCCAGAGAACATGGGTGTTGTGGGTGATATGAGAGATGCTTGGCCAAATGCTCGTGTCCGCAAAAATGTTTCACTCATACATACGTATCATGGATTTAAAGGGGAGAAACAAGGTGCCCTAGAGTTTCTGAAATTAATATTTAGAGCACTTTGTCTCTGCTGGGATCGACAG ]
consensusID : consensus_6355#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 236 fasta sequence
[GAGGGCGTCCACTGGTTCCTGCACTCTGTGAAGTCATAAATGACAATATTGATGGTGTTTATCCTTCTTCACATTTTCCCATATTTGCTGAATTTTTGCTTCCACGCTCCGTCCGCCTAGTGGAGACACCATAATCGTTTTGTGTGTTCTTTTTGCCAAACCATTTCTTTTTCATCATTAATGTTTCTTTTTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACT]
[-] EMBL CA756365 [GAGGGCGTCCACTGGTTCCTGCACTCTGTGAAGTCATAAATGACAATATTGATGGTGTTTATCCTTCTTCACATTTTCCCATATTTGCTGAATTTTTGCTTCCACGCTCCGTCCGCCTAGTGGAGACACCATAATCGTTTTGTGTGTTCTTTTTGCCAAACCATTTCTTTTTCATCATTAATGTTTCTTTTTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACT]
[-] EMBL BE040503 [GAGGGCGTCCACTGGTTCCTGCACTCTGTGAAGTCATAAATGACAATATTGATGGTGTTTATCCTTCTTCACATTTTCCCATATTTGCTGAATTTTTGCTTCCACGCTCCGTCCGCCTAGTGGAGACACCATAATCGTTTTGTGTGTTCTTTTTGCCAAACCATTTCTTTTTCATCATTAATGTTTCTTTTTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6355#0 CGCCCACTGGGACTTCCCCTCCCTTTCCTAGTTTCCTCCCAATCGTGACCAAATTCCGCC 60
consensus_6355#1 ------------------------------------------------------------
consensus_6355#0 AGATCGCCGGTGGTCTCCTTCGCCGGCCGCCTACAGGAACCGCTCAACCGCGGGCACCAG 120
consensus_6355#1 ------------------------------------------------------------
consensus_6355#0 CTACCGCCGCCCGCCTTCTTCCTCCCTCGGAGTCCCCAATACCACAACCCTTGCCGCAGA 180
consensus_6355#1 ------------------------------------------------------------
consensus_6355#0 GAAAGGCGCTGTAGTTGGTGGTGGTAGAGCTGGCTGTGGAGGCGAGGGAGCGAGGATAGG 240
consensus_6355#1 ------------------------------------------------------------
consensus_6355#0 GAGGGGATGACTAGCCTGTCAATTACGGTGATGACGCTCAACCTACACGAGGGGGAGCAA 300
consensus_6355#1 ------------------------------------------------------------
consensus_6355#0 CCGAGCGAGAGCCCCAACAGCTGGGAGAGGCGCCGCGACATCTGCGTCAGCGTCATCACC 360
consensus_6355#1 ------------------------------------------------------------
consensus_6355#0 AGCTACTCCCCCACCATCCTCTGCACCCAGCAAGGATTGAGGTGGCAGCTGGACTACCTA 420
consensus_6355#1 ------------------------------------------------------------
consensus_6355#0 CAGCAGTGCCTGCCTGGTTATGAGCAATTTGGGATTTCAAGAAAAGGCTCAGAGGATAAC 480
consensus_6355#1 ------------------------------------------------------------
consensus_6355#0 ACTGATGAATATTGTACAATATTCTATGAAAAAGAAAAGGTGGAGCTTACAGAAGGTGGT 540
consensus_6355#1 ------------------------------------------------------------
consensus_6355#0 ACCTTTTGGTTGTCAGAATCTCCTTCAGTGCCTGGAAGCGTTTCATGGGGGGCAACTGCA 600
consensus_6355#1 ------------------------------------------------------------
consensus_6355#0 CCCTGCATTGCTACATGGGCAACACATTTCAACTCAAACAAGTAGAACCACCTGGGTTCA 660
consensus_6355#1 ------------------------------------------------------------
consensus_6355#0 GCTTCCAGATTGTAAATACAAACCTTGATGAAGATAGCCCTCGAGCTCGTAGACGAAGTG 720
consensus_6355#1 ------------------------------------------------------------
consensus_6355#0 CTTTGCTAACGTGGCAACATATAGCATCGTTGCCACCCAATTTACCAGTGATCTATTGTG 780
consensus_6355#1 ------------------------------------------------------------
consensus_6355#0 GTGGATTCAACACACAGAAGGAGTCTATGACTGGGCGGTTTTTGCTCGGTAGATCCAGAG 840
consensus_6355#1 ------------------------------------------------------------
consensus_6355#0 AACATGGTGTTGTGGGTGATATGAGAGATGCTTGGCCAAATGCTCGTGTCCGCAAAAATG 900
consensus_6355#1 ------------------------------------------------------------
consensus_6355#0 TTTCACTCATACATACGTATCATGGATTTAAAGGGGAGAAACAAGGTGCCCTAGAGTTTC 960
consensus_6355#1 ------------------------------------------------------------
consensus_6355#0 TGAAATTAATATTTAGAGCACTTTGTCTCTGCTGGGATCGACAGACTCAGGACTTGCATA 1020
consensus_6355#1 ------------------------------------------------------------
consensus_6355#0 TTGACTGGATACTGTTTAGAGGGCGTCCACTGGTTCCTGCACTCTGTGAAGTCATAAATG 1080
consensus_6355#1 ------------------GAGGGCGTCCACTGGTTCCTGCACTCTGTGAAGTCATAAATG 42
******************************************
consensus_6355#0 ACAATATTGATGGTGTTTATCCTTCTTCACATTTTCCCATATTTGCTGAATTTTTGCTTC 1140
consensus_6355#1 ACAATATTGATGGTGTTTATCCTTCTTCACATTTTCCCATATTTGCTGAATTTTTGCTTC 102
************************************************************
consensus_6355#0 CACGCTCCGTCCGCCTAGTGGAGACACCATAATCGTTTTGTGTGTTCTTTTTGCCATACC 1200
consensus_6355#1 CACGCTCCGTCCGCCTAGTGGAGACACCATAATCGTTTTGTGTGTTCTTTTTGCCAAACC 162
******************************************************** ***
consensus_6355#0 ATTTCTTTTTCATCATTAATGTTTCTTTTTGGTTAAATTGTTTGTTTATTTTTATTTTCT 1260
consensus_6355#1 ATTTCTTTTTCATCATTAATGTTTCTTTTTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAA 222
************************************* * *
consensus_6355#0 CTCTG-TCGCGTTTTGTTTGCCTTGATCATACACGTTACATGTACTCCTGTAGTCCTGTG 1319
consensus_6355#1 AAAAACTCGAGACT---------------------------------------------- 236
*** * *
consensus_6355#0 CAGAATCTGGGCCAA 1334
consensus_6355#1 ---------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||