These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6364#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 811 fasta sequence [AAAGCGGACTAGGAGAATGCTGTCAAATCGGGAATCAGCCAGGAGGTCAAGAAAAAGGAAGCAAGCTCACCTAAACGATCTAGAATCACAGGTTTCCCAGTTAAGATCTGAGAATGCATCTCTGCAAAAGCGCTTGTCTGACATGACTCAGAAATATAAGCAATCTACCACAGAATATGGCAATCTTCAAGATGACATGAACGCTATGAGGAGAAAGGTATTTTCTTTTTGTTGTTGTGACCGTTTGATTACATCCAGCACTTCTTTTATTCCCATTGAAGGGCTATGAATCTGTTGATTGTAGTCCAGAAGCTGTCCATTTACATAGTATTCTTTCTATAATTAAAATGTTTCGATCTAATGCAGCCCATTTACATAGCATTATAATATTTTGATTTAATTTTCTGTTTCTTCTGAGGATGCAGGTACGTATTATTCTCTCTATGTGGAATAGGAAGAGACTAGTGTATTTTAATATTTTTCTTGTTTTAGTTTGGGTTTTAAGAATAACAATGTTCTCTTACAGGTGTGGCGTTGTAAAAAAAGAAACAAAACATTTTAAAAGCGCTTGTACCATGTTGTGATGCTCCAAGAGTGTGTCCCATTAAATCTATGGTTTGCTCCTTATGGAAGGGCTTTTTTCTCTGAGAAGAACGAAAACCTTCATATGAGGAGTCCAAACAGGGCACAATCATACAAACATTTGTTTAATGCTTGTATGTGAGTATATGCACAACTCTGTATTTATGTCTTGCATGGTAAGGTGTTTTTTTTTTTCAAAACATTCAGTACAGTGATGACTGCTGCTGCA] [+] EMBL CB625827 [AAAGCGGACTAGGAGAATGCTGTCAAATCGGGAATCAGCCAGGAGGTCAAGAAAAAGGAAGCAAGCTCACCTAAACGATCTAGAATCACAGGTTTCCCAGTTAAGATCTGAGAATGCATCTCTGCAAAAGCGCTTGTCTGACATGACTCAGAAATATAAGCAATCTACCACAGAATATGGCAATCTTCAAGATGACATGAACGCTATGAGGAGAAAGGTATTTTCTTTTTGTTGTTGTGACCGTTTGATTACATCCAGCACTTCTTTTATTCCCATTGAAGGGCTATGAATCTGTTGATTGTAGTCCAGAAGCTGTCCATTTACATAGTATTCTTTCTATAATTAAAATGTTTCGATCTAATGCAGCCCATTTACATAGCATTATAATATTTTGATTTAATTTTCTGTTTCTTCTGAGGATGCAGGTACGTATTATTCTCTCTATGTGGAATAGGAAGAGACTAGTGTATTTTAATATTTTTCTTGTTTTAGTTTGGGTTTTAAGAATAACAATGTTCTCTTACAGGTGTGGCGTTGTAAAAAAAGAAACAAAACATTTTAAAAGCGCTTGTACCATGTTGTGATGCTCCAAGAGTGTGTCCCATTAAATCTATGGTTTGCTCCTTATGGAAGGGCTTTTTTCTCTGAGAAGAACGAAAACCTTCATATGAGGAGTCCAAACAGGGCACAATCATACAAACATTTGTTTAATGCTTGTATGTGAGTATATGCACAACTCTGTATTTATGTCTTGCATGGTAAGGTGTTTTTTTTTTTCAAAACATTCAGTACAGTGATGACTGCTGCTGCA] consensusID : consensus_6364#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 799 fasta sequence [AAACTATGTATGCATCCAGGTACATTGATGCCACAAACTCCATTACCAAAAACCTTAATACGCCAGAGCACCAGAAGCTGGTTTTAGAGCAGTATCAGTATACCTGCTGTTACTACTTATTATCACAGGCAGTAGCTTCAGGCAATGACAAGGCTGATGCTGCCTCAAAATGTGTCACATCTCCAGCATGGATTCTCTTCTGCAGGTTCTCCAAGCTTGCGACACGCCGCACGGACGGTGACCTCAAGGCCATTGCTGCACTTGGCACAGGAATTGCTTCATCTGGGAGGCTACAGTTTGTCCAGTCGTCTTCGACGAGAGCAGCAGAAGCTGCGTCTGATACACCTGAAGAAAAGGGCATGCTGCTTGCAGGCACTTCAGATGTAGTGAACAATTGAAGTCCTATTCCAGTTACTCTCCTCACCGCTTCTTCAGCTATATTCACCTGAACACAAAGCACTTCGTTACAACGTAAACGATATGAAACCATAAGATTATTAGCAACCACAAGCTACATTAATATAAATTATTTTGAGAAGAACAATAGTATAAATCAGTGTCTCAGTTGTAGCTCCACAACAGATCTATTACAGTAAACATTTTACAGAATTTAAGTTAAACCCGAGCTGATGTTTTTGGGAAAACAAATTCAACTTTATATATAAAGGGACAGAACAATAGGTTCTTATGTATACATGTTCCTTTTGATATCTCTTTGTGTGTAGTGTTGTTGAAAACAGGATTGAGAATTTGAGACTACCAATAAAGCCTACTTTGCAGCAGCAGTCATCACTGTACT] [+] EMBL CB625828 [AAACTATGTATGCATCCAGGTACATTGATGCCACAAACTCCATTACCAAAAACCTTAATACGCCAGAGCACCAGAAGCTGGTTTTAGAGCAGTATCAGTATACCTGCTGTTACTACTTATTATCACAGGCAGTAGCTTCAGGCAATGACAAGGCTGATGCTGCCTCAAAATGTGTCACATCTCCAGCATGGATTCTCTTCTGCAGGTTCTCCAAGCTTGCGACACGCCGCACGGACGGTGACCTCAAGGCCATTGCTGCACTTGGCACAGGAATTGCTTCATCTGGGAGGCTACAGTTTGTCCAGTCGTCTTCGACGAGAGCAGCAGAAGCTGCGTCTGATACACCTGAAGAAAAGGGCATGCTGCTTGCAGGCACTTCAGATGTAGTGAACAATTGAAGTCCTATTCCAGTTACTCTCCTCACCGCTTCTTCAGCTATATTCACCTGAACACAAAGCACTTCGTTACAACGTAAACGATATGAAACCATAAGATTATTAGCAACCACAAGCTACATTAATATAAATTATTTTGAGAAGAACAATAGTATAAATCAGTGTCTCAGTTGTAGCTCCACAACAGATCTATTACAGTAAACATTTTACAGAATTTAAGTTAAACCCGAGCTGATGTTTTTGGGAAAACAAATTCAACTTTATATATAAAGGGACAGAACAATAGGTTCTTATGTATACATGTTCCTTTTGATATCTCTTTGTGTGTAGTGTTGTTGAAAACAGGATTGAGAATTTGAGACTACCAATAAAGCCTACTTTGCAGCAGCAGTCATCACTGTACT] consensusID : consensus_6364#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 795 fasta sequence [TCTTTTTTTTTAGGGCCAAGACAATTTATAACTTTATATGACTCAATACAATGATACTCCCTCCGTTTCACAATGTAAGTCATTCTAGACATATATATCACAATGTAAGTCATTCTAGCATTACCAAAAACCTTAATACGCCAGAGCACCAGAAGCTGGTTTTAGAGCAGTATCAGTATACCTGCTGTTACTACTTATTATCACAGGCAGTAGCTTCAGGCAATGACAAGGCTGATGCTGCCTCAAAATGTGTCACATCTCCAGCATGGATTCTCTTCTGCAGGTTCTCCAAGCTTGCGACACGCCGCACGGACGGTGACCTCAAGGCCATTGCTGCACTTGGCACAGGAATTGCTTCATCTGGGAGGCTACAGTTTGTCCAGTCGTCTTCGACGAGAGCAGCAGCAGCAGCAGCAGAAGCTGCGTCTGATACACCTGAAGAAACGGGCATGCTGCTTGCAGGCATTTCAGATGTAGTGAACAATTGAAGTCCTATTCCAGTTACTCTCCTCACCGCTTCTTCAGCTATATTCACCTGAACACAAAGCACTTCGTTACAACGTAAACGATATGAAACCATAAGATTATTAGCAACCACAAGCTACATTAATATAAATTATTTTGAGAAGAACAATAGTATAAATCAGTGTCTCAGTTGTAGCTCCACAACAGATCTATTACAGTAAACATTTTACAGAATTTAAGTTAAACCCGAGCTGATGTTTTTGGGAAAACAAATTCAACTTTATATATAAAGGGACAGAACAATAGGTTCTTATGTATACATGTTCCTTT] [+] EMBL CB673064 [TCTTTTTTTTTAGGGCCAAGACAATTTATAACTTTATATGACTCAATACAATGATACTCCCTCCGTTTCACAATGTAAGTCATTCTAGACATATATATCACAATGTAAGTCATTCTAGCATTACCAAAAACCTTAATACGCCAGAGCACCAGAAGCTGGTTTTAGAGCAGTATCAGTATACCTGCTGTTACTACTTATTATCACAGGCAGTAGCTTCAGGCAATGACAAGGCTGATGCTGCCTCAAAATGTGTCACATCTCCAGCATGGATTCTCTTCTGCAGGTTCTCCAAGCTTGCGACACGCCGCACGGACGGTGACCTCAAGGCCATTGCTGCACTTGGCACAGGAATTGCTTCATCTGGGAGGCTACAGTTTGTCCAGTCGTCTTCGACGAGAGCAGCAGCAGCAGCAGCAGAAGCTGCGTCTGATACACCTGAAGAAACGGGCATGCTGCTTGCAGGCATTTCAGATGTAGTGAACAATTGAAGTCCTATTCCAGTTACTCTCCTCACCGCTTCTTCAGCTATATTCACCTGAACACAAAGCACTTCGTTACAACGTAAACGATATGAAACCATAAGATTATTAGCAACCACAAGCTACATTAATATAAATTATTTTGAGAAGAACAATAGTATAAATCAGTGTCTCAGTTGTAGCTCCACAACAGATCTATTACAGTAAACATTTTACAGAATTTAAGTTAAACCCGAGCTGATGTTTTTGGGAAAACAAATTCAACTTTATATATAAAGGGACAGAACAATAGGTTCTTATGTATACATGTTCCTTT] consensusID : consensus_6364#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 403 fasta sequence [TGAGAATGCATCTCTGCAAAAGCGCTTGTCTGACATGACTCAGAAATATAAGCAATCTACCACAGAATATGGCAATCTTCAAGATGACATGAACGCTATGAGGAGAAAGGTGAATATAGCTGAAGAAGCGGTGAGGAGAGTAACTGGAATAGGACTTCAATTGTTCACTACATCTGAAATGCCTGCAAGCAGCATGCCCGTTTCTTCAGGTGTATCAGACGCAGCTTCTGCTGCTGCTGCTGCTGCTCTCGTCGAAGACCTNGGNACAAACTGTAGCCTCCCAGATGAAGCAATTCCTGTGCCAAGTGCAGCAATGGCCTTGAGGTCACCGTCCGTGCGGCGTGTCGCAGCTTGGGAGACCTGCAGAAGAGATCCATGCTGGAGATGTGACACATTTGAGGCA] [+] EMBL C74655 [TGAGAATGCATCTCTGCAAAAGCGCTTGTCTGACATGACTCAGAAATATAAGCAATCTACCACAGAATATGGCAATCTTCAAGATGACATGAACGCTATGAGGAGAAAGGTGAATATAGCTGAAGAAGCGGTGAGGAGAGTAACTGGAATAGGACTTCAATTGTTCACTACATCTGAAATGCCTGCAAGCAGCATGCCCGTTTCTTCAGGTGTATCAGACGCAGCTTCTGCTGCTGCTGCTGCTGCTCTCGTCGAAGACCTNGGNACAAACTGTAGCCTCCCAGATGAAGCAATTCCTGTGCCAAGTGCAGCAATGGCCTTGAGGTCACCGTCCGTGCGGCGTGTCGCAGCTTGGGAGACCTGCAGAAGAGATCCATGCTGGAGATGTGACACATTTGAGGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6364#1 ------------------------------------------------------------ consensus_6364#2 TCTTTTTTTTTAGGGCCAAGACAATTTATAACTTTATATGACTCAATACAATGATACTCC 60 consensus_6364#3 ------------------------------------------------------------ consensus_6364#0 ------------------------------------------------------------ consensus_6364#1 -------AAACTATGTATG-CATCCAGGTACATTGATGCCACAA--------ACTC---C 41 consensus_6364#2 CTCCGTTTCACAATGTAAGTCATTCTAG-ACATATATATCACAATGTAAGTCATTCTAGC 119 consensus_6364#3 ------------------------------------------------------------ consensus_6364#0 ------------------------------------------------------------ consensus_6364#1 ATTACCAAAAACCTTAATACGCCAGAGCACCAGAAGCTGGTTTTAGAGCAGTATCAGTAT 101 consensus_6364#2 ATTACCAAAAACCTTAATACGCCAGAGCACCAGAAGCTGGTTTTAGAGCAGTATCAGTAT 179 consensus_6364#3 ------------------------------------------------------------ consensus_6364#0 ---------------AAAGCGGACTAGGAGAATGCTGTCAAATCGGGAATCAGCCAGGAG 45 consensus_6364#1 ACCTGCTGTTACTACTTATTATCACAGGCAGTAGCTTCAGGCAATGACAAGGCTGATGCT 161 consensus_6364#2 ACCTGCTGTTACTACTTATTATCACAGGCAGTAGCTTCAGGCAATGACAAGGCTGATGCT 239 consensus_6364#3 ------------------------------------------------------------ consensus_6364#0 GTCAAGAAAAAGGAAGCAAGCTCACCTAAACGATCTAGAATCACAGGTTTCCCAGTTAAG 105 consensus_6364#1 GCCTCAAAATGTGTCACATCTCCAGCATGGATTCTCTTCTGCAGGTTCTCCAAGCTTGCG 221 consensus_6364#2 GCCTCAAAATGTGTCACATCTCCAGCATGGATTCTCTTCTGCAGGTTCTCCAAGCTTGCG 299 consensus_6364#3 ---TGAGAATGCATC---TCTGCAAAAGCGCTTGTCTGACATGACTCAGAAATATAAGCA 54 consensus_6364#0 ATCTGAGAATGCATC---TCTGCAAAAGCGCTTGTCTGACATGACTCAGAAATATAAGCA 162 * * **** ** *** ** * * ** *** * * ** consensus_6364#1 ACACGCCGCACGG-ACGGTGACCT-CAAGGCCATTGCTGCACTTGGCACAGGAATTGCTT 279 consensus_6364#2 ACACGCCGCACGG-ACGGTGACCT-CAAGGCCATTGCTGCACTTGGCACAGGAATTGCTT 357 consensus_6364#3 ATCTACCACAGAATATGGCAATCTTCAAGATGACATGAACGCTATGAGGAGAAAGGTGAA 114 consensus_6364#0 ATCTACCACAGAATATGGCAATCTTCAAGATGACATGAACGCTATGAGGAGAAAGGTATT 222 * ** ** * ** * ** **** * * ** * ** ** consensus_6364#1 CA-TCTGGGAGGCTACAGTTTGTCCAGTCGTCTTCGACGAGAGCAGCAG----------- 327 consensus_6364#2 CA-TCTGGGAGGCTACAGTTTGTCCAGTCGTCTTCGACGAGAGCAGCAGCAGCAGCAGCA 416 consensus_6364#3 TA-TAGCTGAAGAAGCGGTGAGGAGAGTAA--CTGGAATAGGACTTCAATTGT------- 164 consensus_6364#0 TTCTTTTTGTTGTTGTGACCGTTTGATTAC--ATCCAGCACTTCTTTTATTCCCATTG-A 279 * * * * * * * * * consensus_6364#1 -AAGCTGCGTCTGATACACCTG-AAGAAAAGGGCATGCTGCTTGCA-GGCACTTCAGATG 384 consensus_6364#2 GAAGCTGCGTCTGATACACCTG-AAGAAACGGGCATGCTGCTTGCA-GGCATTTCAGATG 474 consensus_6364#3 -TCACTACATCTGAAATGCCTGCAAGCAGCATGCCCGTTTCTT-CA-GGTGTATCAGACG 221 consensus_6364#0 AGGGCTATGAATCTGTTGATTGTAGTCCAGAAGCTGTCCATTTACATAGTATTCTTTCTA 339 ** * ** * ** ** ** * consensus_6364#1 TAGTGAACAATTGAAGTCCTATTCCAGTTACTCT------CCTC-----ACCGCTTCTTC 433 consensus_6364#2 TAGTGAACAATTGAAGTCCTATTCCAGTTACTCT------CCTC-----ACCGCTTCTTC 523 consensus_6364#3 CAGC------TTCTGCTGCTGCTGCTGCTGCTCT------CGTCG-AAGACCTNGGNACA 268 consensus_6364#0 TAATTAAAATGTTTCGATCTAATGCAGCCCATTTACATAGCATTATAATATTTTGATTTA 399 * * ** * * * * * * * * consensus_6364#1 AG---CTATATTCACCTGAACACAAAGCA---CTTCGTTACAACGTAAACGATATGAAAC 487 consensus_6364#2 AG---CTATATTCACCTGAACACAAAGCA---CTTCGTTACAACGTAAACGATATGAAAC 577 consensus_6364#3 AA---CTGTAGCCTCCCAGATG--AAGCA---ATTC-CTGTGCCAAGTGCAGCA-ATGGC 318 consensus_6364#0 ATTTTCTGTTTCTTCTGAGGATGCAGGTACGTATTATTCTCTCTATGTGGAATAGGAAGA 459 * ** * * * * * ** * consensus_6364#1 CATAAGATTATTAGCAACCACAAGCTACATTAATATAAATTATTTTGAGAAGAACAATAG 547 consensus_6364#2 CATAAGATTATTAGCAACCACAAGCTACATTAATATAAATTATTTTGAGAAGAACAATAG 637 consensus_6364#3 CTTGAGGTCACCGTCCGT-GCGGCGTGTCGCAGCTTGGGAGACCTGCAGAAGAGATCCAT 377 consensus_6364#0 GACTAGTGTATTTTAATATTTTTCTTGTTTTAGTTTGGGTTTTAAGAATAACAATGTTCT 519 ** * * * * * ** * consensus_6364#1 TATAAATCAGTGTCTCAGTTGTAGCTCCACAACAGATCTATTACAGTAAACATTTTACAG 607 consensus_6364#2 TATAAATCAGTGTCTCAGTTGTAGCTCCACAACAGATCTATTACAGTAAACATTTTACAG 697 consensus_6364#3 GCTGGAGATGTGACACATTTGAGGCA---------------------------------- 403 consensus_6364#0 CTTACAGGTGTGGCGTTGTAAAAAAAGAAACAAAACATTTTAAAAGCGCTTGTACCATGT 579 * * *** * * consensus_6364#1 AATTTAAGTTAAACCCGAGCTGATGTTTTTGGGAAAACAAATTCAACTTTATATATAAAG 667 consensus_6364#2 AATTTAAGTTAAACCCGAGCTGATGTTTTTGGGAAAACAAATTCAACTTTATATATAAAG 757 consensus_6364#3 ------------------------------------------------------------ consensus_6364#0 TGTGATGCTCCAAGAGTGTGTCCCATTAAATCTATGGTTTGCTCCTTATGGAAGGGCTTT 639 consensus_6364#1 GGACAGAACAATAGGTTCTTATGTATACATGTTCCTTTTGATATCTCTTTGTGTGTAGTG 727 consensus_6364#2 GGACAGAACAATAGGTTCTTATGTATACATGTTCCTTT---------------------- 795 consensus_6364#3 ------------------------------------------------------------ consensus_6364#0 TTTCTCTGAGAAGAACGAAAACCTTCATATGAGGAGTCCAAACAGGGCACAATCATACAA 699 consensus_6364#1 TTGTTGAAAACAGGATTGAGAATTTGAGACTACCAATAAAGCCTACTTTGCAGCAGCAGT 787 consensus_6364#2 ------------------------------------------------------------ consensus_6364#3 ------------------------------------------------------------ consensus_6364#0 ACATTTGTTTAATGCTTGTATGTGAGTATATGCACAACTCTGTATTTATGTCTTGCATGG 759 consensus_6364#1 CATCACTGTACT---------------------------------------- 799 consensus_6364#2 ---------------------------------------------------- consensus_6364#3 ---------------------------------------------------- consensus_6364#0 TAAGGTGTTTTTTTTTTTCAAAACATTCAGTACAGTGATGACTGCTGCTGCA 811 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||