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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6364#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 811 fasta sequence
[AAAGCGGACTAGGAGAATGCTGTCAAATCGGGAATCAGCCAGGAGGTCAAGAAAAAGGAAGCAAGCTCACCTAAACGATCTAGAATCACAGGTTTCCCAGTTAAGATCTGAGAATGCATCTCTGCAAAAGCGCTTGTCTGACATGACTCAGAAATATAAGCAATCTACCACAGAATATGGCAATCTTCAAGATGACATGAACGCTATGAGGAGAAAGGTATTTTCTTTTTGTTGTTGTGACCGTTTGATTACATCCAGCACTTCTTTTATTCCCATTGAAGGGCTATGAATCTGTTGATTGTAGTCCAGAAGCTGTCCATTTACATAGTATTCTTTCTATAATTAAAATGTTTCGATCTAATGCAGCCCATTTACATAGCATTATAATATTTTGATTTAATTTTCTGTTTCTTCTGAGGATGCAGGTACGTATTATTCTCTCTATGTGGAATAGGAAGAGACTAGTGTATTTTAATATTTTTCTTGTTTTAGTTTGGGTTTTAAGAATAACAATGTTCTCTTACAGGTGTGGCGTTGTAAAAAAAGAAACAAAACATTTTAAAAGCGCTTGTACCATGTTGTGATGCTCCAAGAGTGTGTCCCATTAAATCTATGGTTTGCTCCTTATGGAAGGGCTTTTTTCTCTGAGAAGAACGAAAACCTTCATATGAGGAGTCCAAACAGGGCACAATCATACAAACATTTGTTTAATGCTTGTATGTGAGTATATGCACAACTCTGTATTTATGTCTTGCATGGTAAGGTGTTTTTTTTTTTCAAAACATTCAGTACAGTGATGACTGCTGCTGCA]
[+] EMBL CB625827 [AAAGCGGACTAGGAGAATGCTGTCAAATCGGGAATCAGCCAGGAGGTCAAGAAAAAGGAAGCAAGCTCACCTAAACGATCTAGAATCACAGGTTTCCCAGTTAAGATCTGAGAATGCATCTCTGCAAAAGCGCTTGTCTGACATGACTCAGAAATATAAGCAATCTACCACAGAATATGGCAATCTTCAAGATGACATGAACGCTATGAGGAGAAAGGTATTTTCTTTTTGTTGTTGTGACCGTTTGATTACATCCAGCACTTCTTTTATTCCCATTGAAGGGCTATGAATCTGTTGATTGTAGTCCAGAAGCTGTCCATTTACATAGTATTCTTTCTATAATTAAAATGTTTCGATCTAATGCAGCCCATTTACATAGCATTATAATATTTTGATTTAATTTTCTGTTTCTTCTGAGGATGCAGGTACGTATTATTCTCTCTATGTGGAATAGGAAGAGACTAGTGTATTTTAATATTTTTCTTGTTTTAGTTTGGGTTTTAAGAATAACAATGTTCTCTTACAGGTGTGGCGTTGTAAAAAAAGAAACAAAACATTTTAAAAGCGCTTGTACCATGTTGTGATGCTCCAAGAGTGTGTCCCATTAAATCTATGGTTTGCTCCTTATGGAAGGGCTTTTTTCTCTGAGAAGAACGAAAACCTTCATATGAGGAGTCCAAACAGGGCACAATCATACAAACATTTGTTTAATGCTTGTATGTGAGTATATGCACAACTCTGTATTTATGTCTTGCATGGTAAGGTGTTTTTTTTTTTCAAAACATTCAGTACAGTGATGACTGCTGCTGCA]
consensusID : consensus_6364#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 799 fasta sequence
[AAACTATGTATGCATCCAGGTACATTGATGCCACAAACTCCATTACCAAAAACCTTAATACGCCAGAGCACCAGAAGCTGGTTTTAGAGCAGTATCAGTATACCTGCTGTTACTACTTATTATCACAGGCAGTAGCTTCAGGCAATGACAAGGCTGATGCTGCCTCAAAATGTGTCACATCTCCAGCATGGATTCTCTTCTGCAGGTTCTCCAAGCTTGCGACACGCCGCACGGACGGTGACCTCAAGGCCATTGCTGCACTTGGCACAGGAATTGCTTCATCTGGGAGGCTACAGTTTGTCCAGTCGTCTTCGACGAGAGCAGCAGAAGCTGCGTCTGATACACCTGAAGAAAAGGGCATGCTGCTTGCAGGCACTTCAGATGTAGTGAACAATTGAAGTCCTATTCCAGTTACTCTCCTCACCGCTTCTTCAGCTATATTCACCTGAACACAAAGCACTTCGTTACAACGTAAACGATATGAAACCATAAGATTATTAGCAACCACAAGCTACATTAATATAAATTATTTTGAGAAGAACAATAGTATAAATCAGTGTCTCAGTTGTAGCTCCACAACAGATCTATTACAGTAAACATTTTACAGAATTTAAGTTAAACCCGAGCTGATGTTTTTGGGAAAACAAATTCAACTTTATATATAAAGGGACAGAACAATAGGTTCTTATGTATACATGTTCCTTTTGATATCTCTTTGTGTGTAGTGTTGTTGAAAACAGGATTGAGAATTTGAGACTACCAATAAAGCCTACTTTGCAGCAGCAGTCATCACTGTACT]
[+] EMBL CB625828 [AAACTATGTATGCATCCAGGTACATTGATGCCACAAACTCCATTACCAAAAACCTTAATACGCCAGAGCACCAGAAGCTGGTTTTAGAGCAGTATCAGTATACCTGCTGTTACTACTTATTATCACAGGCAGTAGCTTCAGGCAATGACAAGGCTGATGCTGCCTCAAAATGTGTCACATCTCCAGCATGGATTCTCTTCTGCAGGTTCTCCAAGCTTGCGACACGCCGCACGGACGGTGACCTCAAGGCCATTGCTGCACTTGGCACAGGAATTGCTTCATCTGGGAGGCTACAGTTTGTCCAGTCGTCTTCGACGAGAGCAGCAGAAGCTGCGTCTGATACACCTGAAGAAAAGGGCATGCTGCTTGCAGGCACTTCAGATGTAGTGAACAATTGAAGTCCTATTCCAGTTACTCTCCTCACCGCTTCTTCAGCTATATTCACCTGAACACAAAGCACTTCGTTACAACGTAAACGATATGAAACCATAAGATTATTAGCAACCACAAGCTACATTAATATAAATTATTTTGAGAAGAACAATAGTATAAATCAGTGTCTCAGTTGTAGCTCCACAACAGATCTATTACAGTAAACATTTTACAGAATTTAAGTTAAACCCGAGCTGATGTTTTTGGGAAAACAAATTCAACTTTATATATAAAGGGACAGAACAATAGGTTCTTATGTATACATGTTCCTTTTGATATCTCTTTGTGTGTAGTGTTGTTGAAAACAGGATTGAGAATTTGAGACTACCAATAAAGCCTACTTTGCAGCAGCAGTCATCACTGTACT]
consensusID : consensus_6364#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 795 fasta sequence
[TCTTTTTTTTTAGGGCCAAGACAATTTATAACTTTATATGACTCAATACAATGATACTCCCTCCGTTTCACAATGTAAGTCATTCTAGACATATATATCACAATGTAAGTCATTCTAGCATTACCAAAAACCTTAATACGCCAGAGCACCAGAAGCTGGTTTTAGAGCAGTATCAGTATACCTGCTGTTACTACTTATTATCACAGGCAGTAGCTTCAGGCAATGACAAGGCTGATGCTGCCTCAAAATGTGTCACATCTCCAGCATGGATTCTCTTCTGCAGGTTCTCCAAGCTTGCGACACGCCGCACGGACGGTGACCTCAAGGCCATTGCTGCACTTGGCACAGGAATTGCTTCATCTGGGAGGCTACAGTTTGTCCAGTCGTCTTCGACGAGAGCAGCAGCAGCAGCAGCAGAAGCTGCGTCTGATACACCTGAAGAAACGGGCATGCTGCTTGCAGGCATTTCAGATGTAGTGAACAATTGAAGTCCTATTCCAGTTACTCTCCTCACCGCTTCTTCAGCTATATTCACCTGAACACAAAGCACTTCGTTACAACGTAAACGATATGAAACCATAAGATTATTAGCAACCACAAGCTACATTAATATAAATTATTTTGAGAAGAACAATAGTATAAATCAGTGTCTCAGTTGTAGCTCCACAACAGATCTATTACAGTAAACATTTTACAGAATTTAAGTTAAACCCGAGCTGATGTTTTTGGGAAAACAAATTCAACTTTATATATAAAGGGACAGAACAATAGGTTCTTATGTATACATGTTCCTTT]
[+] EMBL CB673064 [TCTTTTTTTTTAGGGCCAAGACAATTTATAACTTTATATGACTCAATACAATGATACTCCCTCCGTTTCACAATGTAAGTCATTCTAGACATATATATCACAATGTAAGTCATTCTAGCATTACCAAAAACCTTAATACGCCAGAGCACCAGAAGCTGGTTTTAGAGCAGTATCAGTATACCTGCTGTTACTACTTATTATCACAGGCAGTAGCTTCAGGCAATGACAAGGCTGATGCTGCCTCAAAATGTGTCACATCTCCAGCATGGATTCTCTTCTGCAGGTTCTCCAAGCTTGCGACACGCCGCACGGACGGTGACCTCAAGGCCATTGCTGCACTTGGCACAGGAATTGCTTCATCTGGGAGGCTACAGTTTGTCCAGTCGTCTTCGACGAGAGCAGCAGCAGCAGCAGCAGAAGCTGCGTCTGATACACCTGAAGAAACGGGCATGCTGCTTGCAGGCATTTCAGATGTAGTGAACAATTGAAGTCCTATTCCAGTTACTCTCCTCACCGCTTCTTCAGCTATATTCACCTGAACACAAAGCACTTCGTTACAACGTAAACGATATGAAACCATAAGATTATTAGCAACCACAAGCTACATTAATATAAATTATTTTGAGAAGAACAATAGTATAAATCAGTGTCTCAGTTGTAGCTCCACAACAGATCTATTACAGTAAACATTTTACAGAATTTAAGTTAAACCCGAGCTGATGTTTTTGGGAAAACAAATTCAACTTTATATATAAAGGGACAGAACAATAGGTTCTTATGTATACATGTTCCTTT]
consensusID : consensus_6364#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 403 fasta sequence
[TGAGAATGCATCTCTGCAAAAGCGCTTGTCTGACATGACTCAGAAATATAAGCAATCTACCACAGAATATGGCAATCTTCAAGATGACATGAACGCTATGAGGAGAAAGGTGAATATAGCTGAAGAAGCGGTGAGGAGAGTAACTGGAATAGGACTTCAATTGTTCACTACATCTGAAATGCCTGCAAGCAGCATGCCCGTTTCTTCAGGTGTATCAGACGCAGCTTCTGCTGCTGCTGCTGCTGCTCTCGTCGAAGACCTNGGNACAAACTGTAGCCTCCCAGATGAAGCAATTCCTGTGCCAAGTGCAGCAATGGCCTTGAGGTCACCGTCCGTGCGGCGTGTCGCAGCTTGGGAGACCTGCAGAAGAGATCCATGCTGGAGATGTGACACATTTGAGGCA]
[+] EMBL C74655 [TGAGAATGCATCTCTGCAAAAGCGCTTGTCTGACATGACTCAGAAATATAAGCAATCTACCACAGAATATGGCAATCTTCAAGATGACATGAACGCTATGAGGAGAAAGGTGAATATAGCTGAAGAAGCGGTGAGGAGAGTAACTGGAATAGGACTTCAATTGTTCACTACATCTGAAATGCCTGCAAGCAGCATGCCCGTTTCTTCAGGTGTATCAGACGCAGCTTCTGCTGCTGCTGCTGCTGCTCTCGTCGAAGACCTNGGNACAAACTGTAGCCTCCCAGATGAAGCAATTCCTGTGCCAAGTGCAGCAATGGCCTTGAGGTCACCGTCCGTGCGGCGTGTCGCAGCTTGGGAGACCTGCAGAAGAGATCCATGCTGGAGATGTGACACATTTGAGGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6364#1 ------------------------------------------------------------
consensus_6364#2 TCTTTTTTTTTAGGGCCAAGACAATTTATAACTTTATATGACTCAATACAATGATACTCC 60
consensus_6364#3 ------------------------------------------------------------
consensus_6364#0 ------------------------------------------------------------
consensus_6364#1 -------AAACTATGTATG-CATCCAGGTACATTGATGCCACAA--------ACTC---C 41
consensus_6364#2 CTCCGTTTCACAATGTAAGTCATTCTAG-ACATATATATCACAATGTAAGTCATTCTAGC 119
consensus_6364#3 ------------------------------------------------------------
consensus_6364#0 ------------------------------------------------------------
consensus_6364#1 ATTACCAAAAACCTTAATACGCCAGAGCACCAGAAGCTGGTTTTAGAGCAGTATCAGTAT 101
consensus_6364#2 ATTACCAAAAACCTTAATACGCCAGAGCACCAGAAGCTGGTTTTAGAGCAGTATCAGTAT 179
consensus_6364#3 ------------------------------------------------------------
consensus_6364#0 ---------------AAAGCGGACTAGGAGAATGCTGTCAAATCGGGAATCAGCCAGGAG 45
consensus_6364#1 ACCTGCTGTTACTACTTATTATCACAGGCAGTAGCTTCAGGCAATGACAAGGCTGATGCT 161
consensus_6364#2 ACCTGCTGTTACTACTTATTATCACAGGCAGTAGCTTCAGGCAATGACAAGGCTGATGCT 239
consensus_6364#3 ------------------------------------------------------------
consensus_6364#0 GTCAAGAAAAAGGAAGCAAGCTCACCTAAACGATCTAGAATCACAGGTTTCCCAGTTAAG 105
consensus_6364#1 GCCTCAAAATGTGTCACATCTCCAGCATGGATTCTCTTCTGCAGGTTCTCCAAGCTTGCG 221
consensus_6364#2 GCCTCAAAATGTGTCACATCTCCAGCATGGATTCTCTTCTGCAGGTTCTCCAAGCTTGCG 299
consensus_6364#3 ---TGAGAATGCATC---TCTGCAAAAGCGCTTGTCTGACATGACTCAGAAATATAAGCA 54
consensus_6364#0 ATCTGAGAATGCATC---TCTGCAAAAGCGCTTGTCTGACATGACTCAGAAATATAAGCA 162
* * **** ** *** ** * * ** *** * * **
consensus_6364#1 ACACGCCGCACGG-ACGGTGACCT-CAAGGCCATTGCTGCACTTGGCACAGGAATTGCTT 279
consensus_6364#2 ACACGCCGCACGG-ACGGTGACCT-CAAGGCCATTGCTGCACTTGGCACAGGAATTGCTT 357
consensus_6364#3 ATCTACCACAGAATATGGCAATCTTCAAGATGACATGAACGCTATGAGGAGAAAGGTGAA 114
consensus_6364#0 ATCTACCACAGAATATGGCAATCTTCAAGATGACATGAACGCTATGAGGAGAAAGGTATT 222
* ** ** * ** * ** **** * * ** * ** **
consensus_6364#1 CA-TCTGGGAGGCTACAGTTTGTCCAGTCGTCTTCGACGAGAGCAGCAG----------- 327
consensus_6364#2 CA-TCTGGGAGGCTACAGTTTGTCCAGTCGTCTTCGACGAGAGCAGCAGCAGCAGCAGCA 416
consensus_6364#3 TA-TAGCTGAAGAAGCGGTGAGGAGAGTAA--CTGGAATAGGACTTCAATTGT------- 164
consensus_6364#0 TTCTTTTTGTTGTTGTGACCGTTTGATTAC--ATCCAGCACTTCTTTTATTCCCATTG-A 279
* * * * * * * * *
consensus_6364#1 -AAGCTGCGTCTGATACACCTG-AAGAAAAGGGCATGCTGCTTGCA-GGCACTTCAGATG 384
consensus_6364#2 GAAGCTGCGTCTGATACACCTG-AAGAAACGGGCATGCTGCTTGCA-GGCATTTCAGATG 474
consensus_6364#3 -TCACTACATCTGAAATGCCTGCAAGCAGCATGCCCGTTTCTT-CA-GGTGTATCAGACG 221
consensus_6364#0 AGGGCTATGAATCTGTTGATTGTAGTCCAGAAGCTGTCCATTTACATAGTATTCTTTCTA 339
** * ** * ** ** ** *
consensus_6364#1 TAGTGAACAATTGAAGTCCTATTCCAGTTACTCT------CCTC-----ACCGCTTCTTC 433
consensus_6364#2 TAGTGAACAATTGAAGTCCTATTCCAGTTACTCT------CCTC-----ACCGCTTCTTC 523
consensus_6364#3 CAGC------TTCTGCTGCTGCTGCTGCTGCTCT------CGTCG-AAGACCTNGGNACA 268
consensus_6364#0 TAATTAAAATGTTTCGATCTAATGCAGCCCATTTACATAGCATTATAATATTTTGATTTA 399
* * ** * * * * * * * *
consensus_6364#1 AG---CTATATTCACCTGAACACAAAGCA---CTTCGTTACAACGTAAACGATATGAAAC 487
consensus_6364#2 AG---CTATATTCACCTGAACACAAAGCA---CTTCGTTACAACGTAAACGATATGAAAC 577
consensus_6364#3 AA---CTGTAGCCTCCCAGATG--AAGCA---ATTC-CTGTGCCAAGTGCAGCA-ATGGC 318
consensus_6364#0 ATTTTCTGTTTCTTCTGAGGATGCAGGTACGTATTATTCTCTCTATGTGGAATAGGAAGA 459
* ** * * * * * ** *
consensus_6364#1 CATAAGATTATTAGCAACCACAAGCTACATTAATATAAATTATTTTGAGAAGAACAATAG 547
consensus_6364#2 CATAAGATTATTAGCAACCACAAGCTACATTAATATAAATTATTTTGAGAAGAACAATAG 637
consensus_6364#3 CTTGAGGTCACCGTCCGT-GCGGCGTGTCGCAGCTTGGGAGACCTGCAGAAGAGATCCAT 377
consensus_6364#0 GACTAGTGTATTTTAATATTTTTCTTGTTTTAGTTTGGGTTTTAAGAATAACAATGTTCT 519
** * * * * * ** *
consensus_6364#1 TATAAATCAGTGTCTCAGTTGTAGCTCCACAACAGATCTATTACAGTAAACATTTTACAG 607
consensus_6364#2 TATAAATCAGTGTCTCAGTTGTAGCTCCACAACAGATCTATTACAGTAAACATTTTACAG 697
consensus_6364#3 GCTGGAGATGTGACACATTTGAGGCA---------------------------------- 403
consensus_6364#0 CTTACAGGTGTGGCGTTGTAAAAAAAGAAACAAAACATTTTAAAAGCGCTTGTACCATGT 579
* * *** * *
consensus_6364#1 AATTTAAGTTAAACCCGAGCTGATGTTTTTGGGAAAACAAATTCAACTTTATATATAAAG 667
consensus_6364#2 AATTTAAGTTAAACCCGAGCTGATGTTTTTGGGAAAACAAATTCAACTTTATATATAAAG 757
consensus_6364#3 ------------------------------------------------------------
consensus_6364#0 TGTGATGCTCCAAGAGTGTGTCCCATTAAATCTATGGTTTGCTCCTTATGGAAGGGCTTT 639
consensus_6364#1 GGACAGAACAATAGGTTCTTATGTATACATGTTCCTTTTGATATCTCTTTGTGTGTAGTG 727
consensus_6364#2 GGACAGAACAATAGGTTCTTATGTATACATGTTCCTTT---------------------- 795
consensus_6364#3 ------------------------------------------------------------
consensus_6364#0 TTTCTCTGAGAAGAACGAAAACCTTCATATGAGGAGTCCAAACAGGGCACAATCATACAA 699
consensus_6364#1 TTGTTGAAAACAGGATTGAGAATTTGAGACTACCAATAAAGCCTACTTTGCAGCAGCAGT 787
consensus_6364#2 ------------------------------------------------------------
consensus_6364#3 ------------------------------------------------------------
consensus_6364#0 ACATTTGTTTAATGCTTGTATGTGAGTATATGCACAACTCTGTATTTATGTCTTGCATGG 759
consensus_6364#1 CATCACTGTACT---------------------------------------- 799
consensus_6364#2 ----------------------------------------------------
consensus_6364#3 ----------------------------------------------------
consensus_6364#0 TAAGGTGTTTTTTTTTTTCAAAACATTCAGTACAGTGATGACTGCTGCTGCA 811
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||