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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6367#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 859 fasta sequence
[ATCGACCACGTGATCGAGCTCGATCTGCTCGCCGCCGGCGGTGACCATCAGCCATGGGCAACTGCCTGCAGAGCGGCGGCGGCGGCGCGGCGGCGTTGGGAGACGGGAAGATGAGCATGAGGAGGAGAGTCTGCGGCGGCGGTGGTGGTGGGGAGGAGGAAGACGAGGCTGCAGGGTCGTCGTCGTCGTCGTCGGTGATGAAGGTGAAGATGGTGCTGACGAAAGCCGAGCTGGAGTGGCTCATGGCGCAGCTCAAGGCCGGCGACCGCCGCCTCGAGGACGTGCTCCAGGAGATGGCCCGCAAGCGCAACCGCGGCCTCCTCACCACCGCCGCCGCCGCCGGTGACGCCTGCGCCGCCTGCGCCGCCGGCGCCGGAGGAGGCGACGGCGCCGACGGGTGCTGGCGGCCCAGCCTGGAGAGCATCGTCGAGGGCCCCGAGATGAGCTCCTTCAGCTTCGACTACTGAACTGATCGCCAGTGTGTCAAAGAGCTAGAGCCTTGTTAATTACGTTAATTACCTTGCTAATTACGTTTAGAGCACGGTAATTTTTCTTGTTAGCAGTGCATGGCCGTCTTTGCTTGCCATGGATGAATCATGAATGGGATGATCAGGGAAGGATAAATTTAACTCTTGTCCTAATGGCTAGAGTTATGAGTTACTACTTGGAGTTGTAGCTAGGGGTAATTAATCTAGGTCGGCTCCTTGCTGCTTTTGAGTTAATCTTTGCTTAACTTTTTTTTTCATTTTTGTATATACAGTGTACTATCTCTGAGAAGTAGTAGAAATACTCTTGTAGTCTTGTATACTTTATTACGGGTATGCTCTTTCTAGTTCTTCTTCTTTGATACAAAAAAAGA]
[+] EMBL CB681770 [ATCGACCACGTGATCGAGCTCGATCTGCTCGCCGCCGGCGGTGACCATCAGCCATGGGCAACTGCCTGCAGAGCGGCGGCGGCGGCGCGGCGGCGTTGGGAGACGGGAAGATGAGCATGAGGAGGAGAGTCTGCGGCGGCGGTGGTGGTGGGGAGGAGGAAGACGAGGCTGCAGGGTCGTCGTCGTCGTCGTCGGTGATGAAGGTGAAGATGGTGCTGACGAAAGCCGAGCTGGAGTGGCTCATGGCGCAGCTCAAGGCCGGCGACCGCCGCCTCGAGGACGTGCTCCAGGAGATGGCCCGCAAGCGCAACCGCGGCCTCCTCACCACCGCCGCCGCCGCCGGTGACGCCTGCGCCGCCTGCGCCGCCGGCGCCGGAGGAGGCGACGGCGCCGACGGGTGCTGGCGGCCCAGCCTGGAGAGCATCGTCGAGGGCCCCGAGATGAGCTCCTTCAGCTTCGACTACTGAACTGATCGCCAGTGTGTCAAAGAGCTAGAGCCTTGTTAATTACGTTAATTACCTTGCTAATTACGTTTAGAGCACGGTAATTTTTCTTGTTAGCAGTGCATGGCCGTCTTTGCTTGCCATGGATGAATCATGAATGGGATGATCAGGGAAGGATAAATTTAACTCTTGTCCTAATGGCTAGAGTTATGAGTTACTACTTGGAGTTGTAGCTAGGGGTAATTAATCTAGGTCGGCTCCTTGCTGCTTTTGAGTTAATCTTTGCTTAACTTTTTTTTTCATTTTTGTATATACAGg ]
[+] EMBL CF325918 [ AGGGTCGTCGTCGTCGTCGTCGGTGATGAAGGTGAAGATGGTGCTGACGAAAGCCGAGCTGGAGTGGCTCATGGCGCAGCTCAAGGCCGGCGACCGCCGCCTCGAGGACGTGCTCCAGGAGATGGCCCGCAAGCGCAACCGCGGCCTCCTCACCACCGCCGCCGCCGCCGGTGACGCCTGCGCCGCCTGCGCCGCCGGCGCCGGAGGAGGCGACGGCGCCGACGGGTGCTGGCGGCCCAGCCTGGAGAGCATCGTCGAGGGCCCCGAGATGAGCTCCTTCAGCTTCGACTACTGAACTGATCGCCAGTGTGTCAAAGAGCTAGAGCCTTGTTAATTACGTTAATTACCTTGCTAATTACGTTTAGAGCACGGTAATTTTTCTTGTTAGCAGTGCATGGCCGTCTTTGCTTGCCATGGATGAATCATGAATGGGATGATCAGGGAAGGATAAATTTAACTCTTGTCCTAATGGCTAGAGTTATGAGTTACTACTTGGAGTTGTAGCTAGGGGTAATTAATCTAGGTCGGCTCCTTGCTGCTTTTGAGTTAATCTTTGCTTAACTTTTTTTTTCATTTTTGTATATACAGTGTACTATCTCTGAGAAGTAGTAGAAATACTC ]
[-] EMBL CB681771 [ CGCCGGAGGAGGCGACGGCGCCGACGGGTGCTGGCGGCCCAGCCTGGAGAGCATCGTCGAGGGCCCCGAGATGAGCTCCTTCAGCTTCGACTACTGAACTGATCGCCAGTGTGTCAAAGAGCTAGAGCCTTGTTAATTACGTTAATTACCTTGCTAATTACGTTTAGAGCACGGTAATTTTTCTTGTTAGCAGTGCATGGCCGTCTTTGCTTGCCATGGATGAATCATGAATGGGATGATCAGGGAAGGATAAATTTAACTCTTGTCCTAATGGCTAGAGTTATGAGTTACTACTTGGAGTTGTAGCTAGGGGTAATTAATCTAGGTCGGCTCCTTGCTGCTTTTGAGTTAATCTTTGCTTAACTTTTTTTTTCATTTTTGTATATACAGTGTACTATCTCTGAGAAGTAGTAGAAATACTCTTGTAGTCTTGTATACTTTATTACGGGTATGCTCTTTCTAGTTCTTCTTCTTTGATACAAAAAAAGA]
consensusID : consensus_6367#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence
[CCCAGCAAAGCTCGATCGACCACGTGATCGAGCTCGATCTGCTCGCCGCCGGCGGTGACCATCAGCCATGGGCAACTGCCTGCAGAGCGGCGGCGGCGGCGCGGCGGCGTTGGGAGACGGGAAGATGAGCATGAGGAGGAGAGTCTGCGGCGGCGGTGGTGGTGGGGAGGAGGAAGACGAGGCTGCAGGGTCGTCGTCGTCGTCGTCGGTGATGAAGGTGAAGATGGTGCTGACGAAAGCCGAGCTGGAGTGGCTCATGGCGCAGCTCAAGGCCGGCGACCGCCGCCTCGAGGACGTGCTCCAGCCTGGAGAGCATCGTCGAGGGCCCCGAGATGAGCTCCTTCAGCTTCGACTACTGAACTGATCGCCAGTGTGTCAAAGAGCTAGAGCCTTGTTAATTACGTTAATTACCTTGCTAATTACGTTTAGAGCACGGTAATTTTTCTTGTTAGCAGTGCATGGCCGTCTTTGCTTGCCATGGATGAATCATGAATGGGATGATCAGGGAAGGATAAATTTAACTCTTGTCCTAATGGCTAGAGTTATGAGTTACTACTTGGAGTTGTAGCTAGGGGTAATTAATCTAGGTCGGCTCCTTGCTGCTTTTGAGTTAATCTTTGCTTAACTTTTTTTTTCATTTTTGTATATACAGTGTACTATCTCTGAGAAGTAGTAGAAATACTCTTGT]
[+] EMBL AK063627 [CCCAGCAAAGCTCGATCGACCACGTGATCGAGCTCGATCTGCTCGCCGCCGGCGGTGACCATCAGCCATGGGCAACTGCCTGCAGAGCGGCGGCGGCGGCGCGGCGGCGTTGGGAGACGGGAAGATGAGCATGAGGAGGAGAGTCTGCGGCGGCGGTGGTGGTGGGGAGGAGGAAGACGAGGCTGCAGGGTCGTCGTCGTCGTCGTCGGTGATGAAGGTGAAGATGGTGCTGACGAAAGCCGAGCTGGAGTGGCTCATGGCGCAGCTCAAGGCCGGCGACCGCCGCCTCGAGGACGTGCTCCAGCCTGGAGAGCATCGTCGAGGGCCCCGAGATGAGCTCCTTCAGCTTCGACTACTGAACTGATCGCCAGTGTGTCAAAGAGCTAGAGCCTTGTTAATTACGTTAATTACCTTGCTAATTACGTTTAGAGCACGGTAATTTTTCTTGTTAGCAGTGCATGGCCGTCTTTGCTTGCCATGGATGAATCATGAATGGGATGATCAGGGAAGGATAAATTTAACTCTTGTCCTAATGGCTAGAGTTATGAGTTACTACTTGGAGTTGTAGCTAGGGGTAATTAATCTAGGTCGGCTCCTTGCTGCTTTTGAGTTAATCTTTGCTTAACTTTTTTTTTCATTTTTGTATATACAGTGTACTATCTCTGAGAAGTAGTAGAAATACTCTTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6367#0 --------------ATCGACCACGTGATCGAGCTCGATCTGCTCGCCGCCGGCGGTGACC 46
consensus_6367#1 CCCAGCAAAGCTCGATCGACCACGTGATCGAGCTCGATCTGCTCGCCGCCGGCGGTGACC 60
**********************************************
consensus_6367#0 ATCAGCCATGGGCAACTGCCTGCAGAGCGGCGGCGGCGGCGCGGCGGCGTTGGGAGACGG 106
consensus_6367#1 ATCAGCCATGGGCAACTGCCTGCAGAGCGGCGGCGGCGGCGCGGCGGCGTTGGGAGACGG 120
************************************************************
consensus_6367#0 GAAGATGAGCATGAGGAGGAGAGTCTGCGGCGGCGGTGGTGGTGGGGAGGAGGAAGACGA 166
consensus_6367#1 GAAGATGAGCATGAGGAGGAGAGTCTGCGGCGGCGGTGGTGGTGGGGAGGAGGAAGACGA 180
************************************************************
consensus_6367#0 GGCTGCAGGGTCGTCGTCGTCGTCGTCGGTGATGAAGGTGAAGATGGTGCTGACGAAAGC 226
consensus_6367#1 GGCTGCAGGGTCGTCGTCGTCGTCGTCGGTGATGAAGGTGAAGATGGTGCTGACGAAAGC 240
************************************************************
consensus_6367#0 CGAGCTGGAGTGGCTCATGGCGCAGCTCAAGGCCGGCGACCGCCGCCTCGAGGACGTGCT 286
consensus_6367#1 CGAGCTGGAGTGGCTCATGGCGCAGCTCAAGGCCGGCGACCGCCGCCTCGAGGACGTGCT 300
************************************************************
consensus_6367#0 CCAGGAGATGGCCCGCAAGCGCAACCGCGGCCTCCTCACCACCGCCGCCGCCGCCGGTGA 346
consensus_6367#1 CCAG-------------------------------------------------------- 304
****
consensus_6367#0 CGCCTGCGCCGCCTGCGCCGCCGGCGCCGGAGGAGGCGACGGCGCCGACGGGTGCTGGCG 406
consensus_6367#1 ------------------------------------------------------------
consensus_6367#0 GCCCAGCCTGGAGAGCATCGTCGAGGGCCCCGAGATGAGCTCCTTCAGCTTCGACTACTG 466
consensus_6367#1 ------CCTGGAGAGCATCGTCGAGGGCCCCGAGATGAGCTCCTTCAGCTTCGACTACTG 358
******************************************************
consensus_6367#0 AACTGATCGCCAGTGTGTCAAAGAGCTAGAGCCTTGTTAATTACGTTAATTACCTTGCTA 526
consensus_6367#1 AACTGATCGCCAGTGTGTCAAAGAGCTAGAGCCTTGTTAATTACGTTAATTACCTTGCTA 418
************************************************************
consensus_6367#0 ATTACGTTTAGAGCACGGTAATTTTTCTTGTTAGCAGTGCATGGCCGTCTTTGCTTGCCA 586
consensus_6367#1 ATTACGTTTAGAGCACGGTAATTTTTCTTGTTAGCAGTGCATGGCCGTCTTTGCTTGCCA 478
************************************************************
consensus_6367#0 TGGATGAATCATGAATGGGATGATCAGGGAAGGATAAATTTAACTCTTGTCCTAATGGCT 646
consensus_6367#1 TGGATGAATCATGAATGGGATGATCAGGGAAGGATAAATTTAACTCTTGTCCTAATGGCT 538
************************************************************
consensus_6367#0 AGAGTTATGAGTTACTACTTGGAGTTGTAGCTAGGGGTAATTAATCTAGGTCGGCTCCTT 706
consensus_6367#1 AGAGTTATGAGTTACTACTTGGAGTTGTAGCTAGGGGTAATTAATCTAGGTCGGCTCCTT 598
************************************************************
consensus_6367#0 GCTGCTTTTGAGTTAATCTTTGCTTAACTTTTTTTTTCATTTTTGTATATACAGTGTACT 766
consensus_6367#1 GCTGCTTTTGAGTTAATCTTTGCTTAACTTTTTTTTTCATTTTTGTATATACAGTGTACT 658
************************************************************
consensus_6367#0 ATCTCTGAGAAGTAGTAGAAATACTCTTGTAGTCTTGTATACTTTATTACGGGTATGCTC 826
consensus_6367#1 ATCTCTGAGAAGTAGTAGAAATACTCTTGT------------------------------ 688
******************************
consensus_6367#0 TTTCTAGTTCTTCTTCTTTGATACAAAAAAAGA 859
consensus_6367#1 ---------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||