These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6376#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1144 fasta sequence [GAGCATCTCAGCTTCCAGGAGCGCGAGAGAAAATCGATCATGGCGAGAGCCTGCAGCCCCGCGTTGAGGCTGCAGCTGCCGCCGAACCCGCCGATCACGCCGCAGCTCCCGAGCTGCAGGACTCACTCCGCTGGCGCCAGGTGCAGAGGCTTCGCCGCCGCCCACTCGCAGCCGCCTGCAGCCGGGCGCCCGGACGAGCCTGCCGCGGAGCCGTCACCGAAGCAACCGGAGATCGCGCAGACGCAGAACCTCAGGAGGAGCCGCAGGAGGGGGCCGGGGTCGCGGCAGAGCCTCGTGTCCGTCGGGACGTCGTGCGGCGGAGGGGATCAGTGGAGCAGCGACTTCGACCTGACGCTGCGGCAGCTGCACCTAGACGACCTCATCGAAGACGGCCAGAACGACGACGCCGACGTCCTGGTGCACCTCCTAGTTCAGCAGCATACTCAGTTTGGAATGTCAATCAAAGGCCGAGTGGTCACGTCCTTCAGCAAAATATGCGATTCCTGCTCCTCGCCGTACTGCGCAAAGATTGATGAGCAGTTCAACCTCACGGTGCTGTCCTCAACCAGGAAAGAACAGAGTGAGATGCCTGATATTGGAGACAGCGATCCATCTGTTATCTACGTGAGACCAGGTGTAGAGGTTGATCTTGACTCCGTGATCCAAGAGACGATACGGCTAACGGCATCTGCCAAGAGTTCATGCTCAGAGGCATGCGAAAAATCTACTGTCGTATGGCAATATGGTGGTAACCAGAAGAAGCGTTACAGCCAACGGTGGTCGAAACTTCTGGACCTGAAGAAAACTCTGGATAAGGCGGCTAACTGAACCACGACGCACATTCATTCAACAGAATGAACACATGCTAGTACAAAATGAGTCAAATGACGCTGGAACCCAAGACGCAGCGGATTGCTCTACCAAAATACAAGTGTTTCTGGCTATATATCTTATATCCGAACAAGGAACGGAGGGTGTAGCAGAGAAACAAGCTGCATCGCAACCCGCTAGCTCTTCGATCTGATCATCTGAATCCTGTGTATAGAACTGTGCCATGTATACGTATAGATGACAATAAACATCACTGGACACGATTAGCCAGTTAGCACACTGTAAATTTTTTGGGGAAAAATGAATCAGAGTT] [+] EMBL AK067753 [GAGCATCTCAGCTTCCAGGAGCGCGAGAGAAAATCGATCATGGCGAGAGCCTGCAGCCCCGCGTTGAGGCTGCAGCTGCCGCCGAACCCGCCGATCACGCCGCAGCTCCCGAGCTGCAGGACTCACTCCGCTGGCGCCAGGTGCAGAGGCTTCGCCGCCGCCCACTCGCAGCCGCCTGCAGCCGGGCGCCCGGACGAGCCTGCCGCGGAGCCGTCACCGAAGCAACCGGAGATCGCGCAGACGCAGAACCTCAGGAGGAGCCGCAGGAGGGGGCCGGGGTCGCGGCAGAGCCTCGTGTCCGTCGGGACGTCGTGCGGCGGAGGGGATCAGTGGAGCAGCGACTTCGACCTGACGCTGCGGCAGCTGCACCTAGACGACCTCATCGAAGACGGCCAGAACGACGACGCCGACGTCCTGGTGCACCTCCTAGTTCAGCAGCATACTCAGTTTGGAATGTCAATCAAAGGCCGAGTGGTCACGTCCTTCAGCAAAATATGCGATTCCTGCTCCTCGCCGTACTGCGCAAAGATTGATGAGCAGTTCAACCTCACGGTGCTGTCCTCAACCAGGAAAGAACAGAGTGAGATGCCTGATATTGGAGACAGCGATCCATCTGTTATCTACGTGAGACCAGGTGTAGAGGTTGATCTTGACTCCGTGATCCAAGAGACGATACGGCTAACGGCATCTGCCAAGAGTTCATGCTCAGAGGCATGCGAAAAATCTACTGTCGTATGGCAATATGGTGGTAACCAGAAGAAGCGTTACAGCCAACGGTGGTCGAAACTTCTGGACCTGAAGAAAACTCTGGATAAGGCGGCTAACTGAACCACGACGCACATTCATTCAACAGAATGAACACATGCTAGTACAAAATGAGTCAAATGACGCTGGAACCCAAGACGCAGCGGATTGCTCTACCAAAATACAAGTGTTTCTGGCTATATATCTTATATCCGAACAAGGAACGGAGGGTGTAGCAGAGAAACAAGCTGCATCGCAACCCGCTAGCTCTTCGATCTGATCATCTGAATCCTGTGTATAGAACTGTGCCATGTATACGTATAGATGACAATAAACATCACTGGACACGATTAGCCAGTTAGCACACTGTAAATTTTTTGGGGAAAAATGAATCAGAGTT] consensusID : consensus_6376#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 342 fasta sequence [TAAGGGGGTTAATTGAACCACGAGGCACATTCATTCAACAGAATGAACACATGTTAGTACAAAATGAGTCAAATGACGTTGGAACCCAAGACGCAGCGGATTGTTTTACCAAAATACAAGTGTTTCGGGCTATATATTTTATATCCGAACAAGGAACGGAGGGTGTAGCAAAGAAACAAGTTGCTTGGCAACCCGCTAGTTTTTGGATATGTTCATTTGAATCCTGTGTATAGAACTGTGCCATGTATAGGTATAGATGCCAATAAACATCACTGGACACTATTAGCCAGTTAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF326201 [TAAGGGGGTTAATTGAACCACGAGGCACATTCATTCAACAGAATGAACACATGTTAGTACAAAATGAGTCAAATGACGTTGGAACCCAAGACGCAGCGGATTGTTTTACCAAAATACAAGTGTTTCGGGCTATATATTTTATATCCGAACAAGGAACGGAGGGTGTAGCAAAGAAACAAGTTGCTTGGCAACCCGCTAGTTTTTGGATATGTTCATTTGAATCCTGTGTATAGAACTGTGCCATGTATAGGTATAGATGCCAATAAACATCACTGGACACTATTAGCCAGTTAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_6376#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 259 fasta sequence [ATCATGGCGAGNGNTGCAGCCCCGCNTTGAGGCTGCAGCTGCCGCCGAACCCGCCGATCACGCCGCAGCTCCCGANCTGAGGACTCACTCCGCTGGCGCCAGGTGCAGAGGCTTCGCCGCCGCCCACTCGCAGCCGCCTGCAGCCGGGCGCCCGGACGAGCCTGCCGCGGAGCGTCACCGAAGCAACCGGAGATCGCGCAGACGCAGGTNCAGACTCTACAACCTCAGGAGGAGCCGCANGAGGGGGCCGGGGTCGCGG] [+] EMBL C71883 [ATCATGGCGAGNGNTGCAGCCCCGCNTTGAGGCTGCAGCTGCCGCCGAACCCGCCGATCACGCCGCAGCTCCCGANCTGAGGACTCACTCCGCTGGCGCCAGGTGCAGAGGCTTCGCCGCCGCCCACTCGCAGCCGCCTGCAGCCGGGCGCCCGGACGAGCCTGCCGCGGAGCGTCACCGAAGCAACCGGAGATCGCGCAGACGCAGGTNCAGACTCTACAACCTCAGGAGGAGCCGCANGAGGGGGCCGGGGTCGCGG] consensusID : consensus_6376#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 249 fasta sequence [GTCAAAATGACGCTGGAACCCAAGACGCAGCGGATTGCTCTACCCTGATACAAGTGTTTCTGGCTATATATCCTTATATCCGAACAAGGAACGGAGGGTGTAGCAGAGAAACAATGCTGCATCGCAACCCGCTAGCTCTTCGATCTGATCATCTGAATCCTGTGTATAGAACTGTGCCATGTATACGTATAGATGACAATAAACATCACTGGACACGATTAGCCAGTTAGCAAAAAAAAAAAAAAAAAA] [+] EMBL BI813078 [GTCAAAATGACGCTGGAACCCAAGACGCAGCGGATTGCTCTACCCTGATACAAGTGTTTCTGGCTATATATCCTTATATCCGAACAAGGAACGGAGGGTGTAGCAGAGAAACAATGCTGCATCGCAACCCGCTAGCTCTTCGATCTGATCATCTGAATCCTGTGTATAGAACTGTGCCATGTATACGTATAGATGACAATAAACATCACTGGACACGATTAGCCAGTTAGCAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6376#1 ------------------------------------------------------------ consensus_6376#3 ------------------------------------------------------------ consensus_6376#0 GAGCATCTCAGCTTCCAGGAGCGCGAGAGAAAATCGATCATGGCGAGAGCCTGCAGCCCC 60 consensus_6376#2 ------------------------------------------------------------ consensus_6376#1 ------------------------------------------------------------ consensus_6376#3 ------------------------------------------------------------ consensus_6376#0 GCGTTGAGGCTGCAGCTGCCGCCGAACCCGCCGATCACGCCGCAGCTCCCGAGCTGCAGG 120 consensus_6376#2 ------------------------------------------------------------ consensus_6376#1 ------------------------------------------------------------ consensus_6376#3 ------------------------------------------------------------ consensus_6376#0 ACTCACTCCGCTGGCGCCAGGTGCAGAGGCTTCGCCGCCGCCCACTCGCAGCCGCCTGCA 180 consensus_6376#2 ------------------------------------------------------------ consensus_6376#1 ------------------------------------------------------------ consensus_6376#3 ------------------------------------------------------------ consensus_6376#0 GCCGGGCGCCCGGACGAGCCTGCCGCGGAGCCGTCACCGAAGCAACCGGAGATCGCGCAG 240 consensus_6376#2 ------------------------------------------------------------ consensus_6376#1 ------------------------------------------------------------ consensus_6376#3 ------------------------------------------------------------ consensus_6376#0 ACGCAGAACCTCAGGAGGAGCCGCAGGAGGGGGCCGGGGTCGCGGCAGAGCCTCGTGTCC 300 consensus_6376#2 ------------------------------------------------------------ consensus_6376#1 ------------------------------------------------------------ consensus_6376#3 ------------------------------------------------------------ consensus_6376#0 GTCGGGACGTCGTGCGGCGGAGGGGATCAGTGGAGCAGCGACTTCGACCTGACGCTGCGG 360 consensus_6376#2 ------------------------------------------------------------ consensus_6376#1 ------------------------------------------------------------ consensus_6376#3 ------------------------------------------------------------ consensus_6376#0 CAGCTGCACCTAGACGACCTCATCGAAGACGGCCAGAACGACGACGCCGACGTCCTGGTG 420 consensus_6376#2 ------------------------------------------------------------ consensus_6376#1 ------------------------------------------------------------ consensus_6376#3 ------------------------------------------------------------ consensus_6376#0 CACCTCCTAGTTCAGCAGCATACTCAGTTTGGAATGTCAATCAAAGGCCGAGTGGTCACG 480 consensus_6376#2 ------------------------------------------------------------ consensus_6376#1 ------------------------------------------------------------ consensus_6376#3 ------------------------------------------------------------ consensus_6376#0 TCCTTCAGCAAAATATGCGATTCCTGCTCCTCGCCGTACTGCGCAAAGATTGATGAGCAG 540 consensus_6376#2 ------------------------------------------------------------ consensus_6376#1 ------------------------------------------------------------ consensus_6376#3 ------------------------------------------------------------ consensus_6376#0 TTCAACCTCACGGTGCTGTCCTCAACCAGGAAAGAACAGAGTGAGATGCCTGATATTGGA 600 consensus_6376#2 ------------------------------------------------------------ consensus_6376#1 ------------------------------------------------------------ consensus_6376#3 ------------------------------------------------------------ consensus_6376#0 GACAGCGATCCATCTGTTATCTACGTGAGACCAGGTGTAGAGGTTGATCTTGACTCCGTG 660 consensus_6376#2 ------------------------------------------------------------ consensus_6376#1 ------------------------------------------------------------ consensus_6376#3 ------------------------------------------------------------ consensus_6376#0 ATCCAAGAGACGATACGGCTAACGGCATCTGCCAAGAGTTCATGCTCAGAGGCATGCGAA 720 consensus_6376#2 ------------------------------------------------------------ consensus_6376#1 ------------------------------------------------------------ consensus_6376#3 ------------------------------------------------------------ consensus_6376#0 AAATCTACTGTCGTATGGCAATATGGTGGTAACCAGAAGAAGCGTTACAGCCAACGGTGG 780 consensus_6376#2 ------------------------------------------------------------ consensus_6376#1 --------------------------------TAAGGGGGTTAATTGAACCACGAGGCAC 28 consensus_6376#3 ------------------------------------------------------------ consensus_6376#0 TCGAAACTTCTGGACCTGAAGAAAACTCTGGATAAGGCGGCTAACTGAACCACGACGCAC 840 consensus_6376#2 ------------------------------------------------------------ consensus_6376#1 ATTCATTCAACAGAATGAACACATGTTAGTACAAAATGAGTCAAA-TGA-CGTTGGAACC 86 consensus_6376#3 ---------------------------------------GTCAAAATGA-CGCTGGAACC 20 consensus_6376#0 ATTCATTCAACAGAATGAACACATGCTAGTACAAAATGAGTCAAA-TGA-CGCTGGAACC 898 consensus_6376#2 ---------------------------------------ATCATGGCGAGNGNTGCAGCC 21 *** ** * ** * ** consensus_6376#1 CAAGACGCAGCGGATTGTTTTACCAAAATACAAGTGTTTCGGGCTATATATT-TTATATC 145 consensus_6376#3 CAAGACGCAGCGGATTGCTCTACCCTGATACAAGTGTTTCTGGCTATATATCCTTATATC 80 consensus_6376#0 CAAGACGCAGCGGATTGCTCTACCAAAATACAAGTGTTTCTGGCTATATATC-TTATATC 957 consensus_6376#2 CC--GCNTTGAGGCTGCAGCTGCCGCCGAACCCGCCGATCACGCCGCAGCTC-------C 72 * * * ** * * ** ** * ** ** * * * consensus_6376#1 CGAACAAGGAACGGAGGGTGTAGCAAAGAAACAA-GTTGCTTGGCAACCCGCTAGTTTTT 204 consensus_6376#3 CGAACAAGGAACGGAGGGTGTAGCAGAGAAACAATGCTGCATCGCAACCCGCTAGCTCTT 140 consensus_6376#0 CGAACAAGGAACGGAGGGTGTAGCAGAGAAACAA-GCTGCATCGCAACCCGCTAGCTCTT 1016 consensus_6376#2 CGANCTGAGGACTCACTCCGCTGGCGCCAGGTGCAGAGGCTTCGCCGCC-GCCCACTCGC 131 *** * * ** * * * * * ** * ** ** ** * consensus_6376#1 GGATATGTTCATTTGAATCCTGTGTATAGAACTGTGCCATGTATAGGTATAGATGCCAAT 264 consensus_6376#3 CGATCTGATCATCTGAATCCTGTGTATAGAACTGTGCCATGTATACGTATAGATGACAAT 200 consensus_6376#0 CGATCTGATCATCTGAATCCTGTGTATAGAACTGTGCCATGTATACGTATAGATGACAAT 1076 consensus_6376#2 AGCCGCCTGCAGCCGGG---CGCCCGGACGAGCCTGCCGCGGAGCGTCACCGAAGCAACC 188 * ** * * * * **** * * * ** * * consensus_6376#1 AAACATCAC-TGGACACTATTAGCCAGTTAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA 323 consensus_6376#3 AAACATCAC-TGGACACGATTAGCCAGTTAGCAAAAAAAAAAAAAAAAAA---------- 249 consensus_6376#0 AAACATCAC-TGGACACGATTAGCCAGTTAGCACACTGTAAATTTTTTGGGGAAAAATGA 1135 consensus_6376#2 GGAGATCGCGCAGACGCAGGTNCAGACTCTACAACCTCAGGAGGAGCCGCANGAGGGGGC 248 * *** * *** * * * * ** * consensus_6376#1 AAAAAAAAAAAAAAAAAAA 342 consensus_6376#3 ------------------- consensus_6376#0 ATCAGAGTT---------- 1144 consensus_6376#2 CGGGGTCGCGG-------- 259 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||