cluster # 6376

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Oryza sativa
cluster # 6376 cluster # 6376 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6376#0 length = 1144 sequences # 1
consensus_6376#1 length = 342 sequences # 1

consensus_6376#2 length = 259 sequences # 1
consensus_6376#3 length = 249 sequences # 1

consensusID : consensus_6376#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1144
fasta sequence

                              [GAGCATCTCAGCTTCCAGGAGCGCGAGAGAAAATCGATCATGGCGAGAGCCTGCAGCCCCGCGTTGAGGCTGCAGCTGCCGCCGAACCCGCCGATCACGCCGCAGCTCCCGAGCTGCAGGACTCACTCCGCTGGCGCCAGGTGCAGAGGCTTCGCCGCCGCCCACTCGCAGCCGCCTGCAGCCGGGCGCCCGGACGAGCCTGCCGCGGAGCCGTCACCGAAGCAACCGGAGATCGCGCAGACGCAGAACCTCAGGAGGAGCCGCAGGAGGGGGCCGGGGTCGCGGCAGAGCCTCGTGTCCGTCGGGACGTCGTGCGGCGGAGGGGATCAGTGGAGCAGCGACTTCGACCTGACGCTGCGGCAGCTGCACCTAGACGACCTCATCGAAGACGGCCAGAACGACGACGCCGACGTCCTGGTGCACCTCCTAGTTCAGCAGCATACTCAGTTTGGAATGTCAATCAAAGGCCGAGTGGTCACGTCCTTCAGCAAAATATGCGATTCCTGCTCCTCGCCGTACTGCGCAAAGATTGATGAGCAGTTCAACCTCACGGTGCTGTCCTCAACCAGGAAAGAACAGAGTGAGATGCCTGATATTGGAGACAGCGATCCATCTGTTATCTACGTGAGACCAGGTGTAGAGGTTGATCTTGACTCCGTGATCCAAGAGACGATACGGCTAACGGCATCTGCCAAGAGTTCATGCTCAGAGGCATGCGAAAAATCTACTGTCGTATGGCAATATGGTGGTAACCAGAAGAAGCGTTACAGCCAACGGTGGTCGAAACTTCTGGACCTGAAGAAAACTCTGGATAAGGCGGCTAACTGAACCACGACGCACATTCATTCAACAGAATGAACACATGCTAGTACAAAATGAGTCAAATGACGCTGGAACCCAAGACGCAGCGGATTGCTCTACCAAAATACAAGTGTTTCTGGCTATATATCTTATATCCGAACAAGGAACGGAGGGTGTAGCAGAGAAACAAGCTGCATCGCAACCCGCTAGCTCTTCGATCTGATCATCTGAATCCTGTGTATAGAACTGTGCCATGTATACGTATAGATGACAATAAACATCACTGGACACGATTAGCCAGTTAGCACACTGTAAATTTTTTGGGGAAAAATGAATCAGAGTT]

[+] EMBL AK067753             [GAGCATCTCAGCTTCCAGGAGCGCGAGAGAAAATCGATCATGGCGAGAGCCTGCAGCCCCGCGTTGAGGCTGCAGCTGCCGCCGAACCCGCCGATCACGCCGCAGCTCCCGAGCTGCAGGACTCACTCCGCTGGCGCCAGGTGCAGAGGCTTCGCCGCCGCCCACTCGCAGCCGCCTGCAGCCGGGCGCCCGGACGAGCCTGCCGCGGAGCCGTCACCGAAGCAACCGGAGATCGCGCAGACGCAGAACCTCAGGAGGAGCCGCAGGAGGGGGCCGGGGTCGCGGCAGAGCCTCGTGTCCGTCGGGACGTCGTGCGGCGGAGGGGATCAGTGGAGCAGCGACTTCGACCTGACGCTGCGGCAGCTGCACCTAGACGACCTCATCGAAGACGGCCAGAACGACGACGCCGACGTCCTGGTGCACCTCCTAGTTCAGCAGCATACTCAGTTTGGAATGTCAATCAAAGGCCGAGTGGTCACGTCCTTCAGCAAAATATGCGATTCCTGCTCCTCGCCGTACTGCGCAAAGATTGATGAGCAGTTCAACCTCACGGTGCTGTCCTCAACCAGGAAAGAACAGAGTGAGATGCCTGATATTGGAGACAGCGATCCATCTGTTATCTACGTGAGACCAGGTGTAGAGGTTGATCTTGACTCCGTGATCCAAGAGACGATACGGCTAACGGCATCTGCCAAGAGTTCATGCTCAGAGGCATGCGAAAAATCTACTGTCGTATGGCAATATGGTGGTAACCAGAAGAAGCGTTACAGCCAACGGTGGTCGAAACTTCTGGACCTGAAGAAAACTCTGGATAAGGCGGCTAACTGAACCACGACGCACATTCATTCAACAGAATGAACACATGCTAGTACAAAATGAGTCAAATGACGCTGGAACCCAAGACGCAGCGGATTGCTCTACCAAAATACAAGTGTTTCTGGCTATATATCTTATATCCGAACAAGGAACGGAGGGTGTAGCAGAGAAACAAGCTGCATCGCAACCCGCTAGCTCTTCGATCTGATCATCTGAATCCTGTGTATAGAACTGTGCCATGTATACGTATAGATGACAATAAACATCACTGGACACGATTAGCCAGTTAGCACACTGTAAATTTTTTGGGGAAAAATGAATCAGAGTT]




>consensus_6376#0
GAGCATCTCAGCTTCCAGGAGCGCGAGAGAAAATCGATCATGGCGAGAGCCTGCAGCCCC
GCGTTGAGGCTGCAGCTGCCGCCGAACCCGCCGATCACGCCGCAGCTCCCGAGCTGCAGG
ACTCACTCCGCTGGCGCCAGGTGCAGAGGCTTCGCCGCCGCCCACTCGCAGCCGCCTGCA
GCCGGGCGCCCGGACGAGCCTGCCGCGGAGCCGTCACCGAAGCAACCGGAGATCGCGCAG
ACGCAGAACCTCAGGAGGAGCCGCAGGAGGGGGCCGGGGTCGCGGCAGAGCCTCGTGTCC
GTCGGGACGTCGTGCGGCGGAGGGGATCAGTGGAGCAGCGACTTCGACCTGACGCTGCGG
CAGCTGCACCTAGACGACCTCATCGAAGACGGCCAGAACGACGACGCCGACGTCCTGGTG
CACCTCCTAGTTCAGCAGCATACTCAGTTTGGAATGTCAATCAAAGGCCGAGTGGTCACG
TCCTTCAGCAAAATATGCGATTCCTGCTCCTCGCCGTACTGCGCAAAGATTGATGAGCAG
TTCAACCTCACGGTGCTGTCCTCAACCAGGAAAGAACAGAGTGAGATGCCTGATATTGGA
GACAGCGATCCATCTGTTATCTACGTGAGACCAGGTGTAGAGGTTGATCTTGACTCCGTG
ATCCAAGAGACGATACGGCTAACGGCATCTGCCAAGAGTTCATGCTCAGAGGCATGCGAA
AAATCTACTGTCGTATGGCAATATGGTGGTAACCAGAAGAAGCGTTACAGCCAACGGTGG
TCGAAACTTCTGGACCTGAAGAAAACTCTGGATAAGGCGGCTAACTGAACCACGACGCAC
ATTCATTCAACAGAATGAACACATGCTAGTACAAAATGAGTCAAATGACGCTGGAACCCA
AGACGCAGCGGATTGCTCTACCAAAATACAAGTGTTTCTGGCTATATATCTTATATCCGA
ACAAGGAACGGAGGGTGTAGCAGAGAAACAAGCTGCATCGCAACCCGCTAGCTCTTCGAT
CTGATCATCTGAATCCTGTGTATAGAACTGTGCCATGTATACGTATAGATGACAATAAAC
ATCACTGGACACGATTAGCCAGTTAGCACACTGTAAATTTTTTGGGGAAAAATGAATCAG
AGTT

consensusID : consensus_6376#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 342
fasta sequence

                              [TAAGGGGGTTAATTGAACCACGAGGCACATTCATTCAACAGAATGAACACATGTTAGTACAAAATGAGTCAAATGACGTTGGAACCCAAGACGCAGCGGATTGTTTTACCAAAATACAAGTGTTTCGGGCTATATATTTTATATCCGAACAAGGAACGGAGGGTGTAGCAAAGAAACAAGTTGCTTGGCAACCCGCTAGTTTTTGGATATGTTCATTTGAATCCTGTGTATAGAACTGTGCCATGTATAGGTATAGATGCCAATAAACATCACTGGACACTATTAGCCAGTTAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF326201             [TAAGGGGGTTAATTGAACCACGAGGCACATTCATTCAACAGAATGAACACATGTTAGTACAAAATGAGTCAAATGACGTTGGAACCCAAGACGCAGCGGATTGTTTTACCAAAATACAAGTGTTTCGGGCTATATATTTTATATCCGAACAAGGAACGGAGGGTGTAGCAAAGAAACAAGTTGCTTGGCAACCCGCTAGTTTTTGGATATGTTCATTTGAATCCTGTGTATAGAACTGTGCCATGTATAGGTATAGATGCCAATAAACATCACTGGACACTATTAGCCAGTTAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_6376#1
TAAGGGGGTTAATTGAACCACGAGGCACATTCATTCAACAGAATGAACACATGTTAGTAC
AAAATGAGTCAAATGACGTTGGAACCCAAGACGCAGCGGATTGTTTTACCAAAATACAAG
TGTTTCGGGCTATATATTTTATATCCGAACAAGGAACGGAGGGTGTAGCAAAGAAACAAG
TTGCTTGGCAACCCGCTAGTTTTTGGATATGTTCATTTGAATCCTGTGTATAGAACTGTG
CCATGTATAGGTATAGATGCCAATAAACATCACTGGACACTATTAGCCAGTTAGCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_6376#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 259
fasta sequence

                              [ATCATGGCGAGNGNTGCAGCCCCGCNTTGAGGCTGCAGCTGCCGCCGAACCCGCCGATCACGCCGCAGCTCCCGANCTGAGGACTCACTCCGCTGGCGCCAGGTGCAGAGGCTTCGCCGCCGCCCACTCGCAGCCGCCTGCAGCCGGGCGCCCGGACGAGCCTGCCGCGGAGCGTCACCGAAGCAACCGGAGATCGCGCAGACGCAGGTNCAGACTCTACAACCTCAGGAGGAGCCGCANGAGGGGGCCGGGGTCGCGG]

[+] EMBL C71883               [ATCATGGCGAGNGNTGCAGCCCCGCNTTGAGGCTGCAGCTGCCGCCGAACCCGCCGATCACGCCGCAGCTCCCGANCTGAGGACTCACTCCGCTGGCGCCAGGTGCAGAGGCTTCGCCGCCGCCCACTCGCAGCCGCCTGCAGCCGGGCGCCCGGACGAGCCTGCCGCGGAGCGTCACCGAAGCAACCGGAGATCGCGCAGACGCAGGTNCAGACTCTACAACCTCAGGAGGAGCCGCANGAGGGGGCCGGGGTCGCGG]




>consensus_6376#2
ATCATGGCGAGNGNTGCAGCCCCGCNTTGAGGCTGCAGCTGCCGCCGAACCCGCCGATCA
CGCCGCAGCTCCCGANCTGAGGACTCACTCCGCTGGCGCCAGGTGCAGAGGCTTCGCCGC
CGCCCACTCGCAGCCGCCTGCAGCCGGGCGCCCGGACGAGCCTGCCGCGGAGCGTCACCG
AAGCAACCGGAGATCGCGCAGACGCAGGTNCAGACTCTACAACCTCAGGAGGAGCCGCAN
GAGGGGGCCGGGGTCGCGG

consensusID : consensus_6376#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 249
fasta sequence

                              [GTCAAAATGACGCTGGAACCCAAGACGCAGCGGATTGCTCTACCCTGATACAAGTGTTTCTGGCTATATATCCTTATATCCGAACAAGGAACGGAGGGTGTAGCAGAGAAACAATGCTGCATCGCAACCCGCTAGCTCTTCGATCTGATCATCTGAATCCTGTGTATAGAACTGTGCCATGTATACGTATAGATGACAATAAACATCACTGGACACGATTAGCCAGTTAGCAAAAAAAAAAAAAAAAAA]

[+] EMBL BI813078             [GTCAAAATGACGCTGGAACCCAAGACGCAGCGGATTGCTCTACCCTGATACAAGTGTTTCTGGCTATATATCCTTATATCCGAACAAGGAACGGAGGGTGTAGCAGAGAAACAATGCTGCATCGCAACCCGCTAGCTCTTCGATCTGATCATCTGAATCCTGTGTATAGAACTGTGCCATGTATACGTATAGATGACAATAAACATCACTGGACACGATTAGCCAGTTAGCAAAAAAAAAAAAAAAAAA]




>consensus_6376#3
GTCAAAATGACGCTGGAACCCAAGACGCAGCGGATTGCTCTACCCTGATACAAGTGTTTC
TGGCTATATATCCTTATATCCGAACAAGGAACGGAGGGTGTAGCAGAGAAACAATGCTGC
ATCGCAACCCGCTAGCTCTTCGATCTGATCATCTGAATCCTGTGTATAGAACTGTGCCAT
GTATACGTATAGATGACAATAAACATCACTGGACACGATTAGCCAGTTAGCAAAAAAAAA
AAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6376#1      ------------------------------------------------------------
consensus_6376#3      ------------------------------------------------------------
consensus_6376#0      GAGCATCTCAGCTTCCAGGAGCGCGAGAGAAAATCGATCATGGCGAGAGCCTGCAGCCCC 60
consensus_6376#2      ------------------------------------------------------------
                                                                                  

consensus_6376#1      ------------------------------------------------------------
consensus_6376#3      ------------------------------------------------------------
consensus_6376#0      GCGTTGAGGCTGCAGCTGCCGCCGAACCCGCCGATCACGCCGCAGCTCCCGAGCTGCAGG 120
consensus_6376#2      ------------------------------------------------------------
                                                                                  

consensus_6376#1      ------------------------------------------------------------
consensus_6376#3      ------------------------------------------------------------
consensus_6376#0      ACTCACTCCGCTGGCGCCAGGTGCAGAGGCTTCGCCGCCGCCCACTCGCAGCCGCCTGCA 180
consensus_6376#2      ------------------------------------------------------------
                                                                                  

consensus_6376#1      ------------------------------------------------------------
consensus_6376#3      ------------------------------------------------------------
consensus_6376#0      GCCGGGCGCCCGGACGAGCCTGCCGCGGAGCCGTCACCGAAGCAACCGGAGATCGCGCAG 240
consensus_6376#2      ------------------------------------------------------------
                                                                                  

consensus_6376#1      ------------------------------------------------------------
consensus_6376#3      ------------------------------------------------------------
consensus_6376#0      ACGCAGAACCTCAGGAGGAGCCGCAGGAGGGGGCCGGGGTCGCGGCAGAGCCTCGTGTCC 300
consensus_6376#2      ------------------------------------------------------------
                                                                                  

consensus_6376#1      ------------------------------------------------------------
consensus_6376#3      ------------------------------------------------------------
consensus_6376#0      GTCGGGACGTCGTGCGGCGGAGGGGATCAGTGGAGCAGCGACTTCGACCTGACGCTGCGG 360
consensus_6376#2      ------------------------------------------------------------
                                                                                  

consensus_6376#1      ------------------------------------------------------------
consensus_6376#3      ------------------------------------------------------------
consensus_6376#0      CAGCTGCACCTAGACGACCTCATCGAAGACGGCCAGAACGACGACGCCGACGTCCTGGTG 420
consensus_6376#2      ------------------------------------------------------------
                                                                                  

consensus_6376#1      ------------------------------------------------------------
consensus_6376#3      ------------------------------------------------------------
consensus_6376#0      CACCTCCTAGTTCAGCAGCATACTCAGTTTGGAATGTCAATCAAAGGCCGAGTGGTCACG 480
consensus_6376#2      ------------------------------------------------------------
                                                                                  

consensus_6376#1      ------------------------------------------------------------
consensus_6376#3      ------------------------------------------------------------
consensus_6376#0      TCCTTCAGCAAAATATGCGATTCCTGCTCCTCGCCGTACTGCGCAAAGATTGATGAGCAG 540
consensus_6376#2      ------------------------------------------------------------
                                                                                  

consensus_6376#1      ------------------------------------------------------------
consensus_6376#3      ------------------------------------------------------------
consensus_6376#0      TTCAACCTCACGGTGCTGTCCTCAACCAGGAAAGAACAGAGTGAGATGCCTGATATTGGA 600
consensus_6376#2      ------------------------------------------------------------
                                                                                  

consensus_6376#1      ------------------------------------------------------------
consensus_6376#3      ------------------------------------------------------------
consensus_6376#0      GACAGCGATCCATCTGTTATCTACGTGAGACCAGGTGTAGAGGTTGATCTTGACTCCGTG 660
consensus_6376#2      ------------------------------------------------------------
                                                                                  

consensus_6376#1      ------------------------------------------------------------
consensus_6376#3      ------------------------------------------------------------
consensus_6376#0      ATCCAAGAGACGATACGGCTAACGGCATCTGCCAAGAGTTCATGCTCAGAGGCATGCGAA 720
consensus_6376#2      ------------------------------------------------------------
                                                                                  

consensus_6376#1      ------------------------------------------------------------
consensus_6376#3      ------------------------------------------------------------
consensus_6376#0      AAATCTACTGTCGTATGGCAATATGGTGGTAACCAGAAGAAGCGTTACAGCCAACGGTGG 780
consensus_6376#2      ------------------------------------------------------------
                                                                                  

consensus_6376#1      --------------------------------TAAGGGGGTTAATTGAACCACGAGGCAC 28
consensus_6376#3      ------------------------------------------------------------
consensus_6376#0      TCGAAACTTCTGGACCTGAAGAAAACTCTGGATAAGGCGGCTAACTGAACCACGACGCAC 840
consensus_6376#2      ------------------------------------------------------------
                                                                                  

consensus_6376#1      ATTCATTCAACAGAATGAACACATGTTAGTACAAAATGAGTCAAA-TGA-CGTTGGAACC 86
consensus_6376#3      ---------------------------------------GTCAAAATGA-CGCTGGAACC 20
consensus_6376#0      ATTCATTCAACAGAATGAACACATGCTAGTACAAAATGAGTCAAA-TGA-CGCTGGAACC 898
consensus_6376#2      ---------------------------------------ATCATGGCGAGNGNTGCAGCC 21
                                                              ***    **  * ** * **

consensus_6376#1      CAAGACGCAGCGGATTGTTTTACCAAAATACAAGTGTTTCGGGCTATATATT-TTATATC 145
consensus_6376#3      CAAGACGCAGCGGATTGCTCTACCCTGATACAAGTGTTTCTGGCTATATATCCTTATATC 80
consensus_6376#0      CAAGACGCAGCGGATTGCTCTACCAAAATACAAGTGTTTCTGGCTATATATC-TTATATC 957
consensus_6376#2      CC--GCNTTGAGGCTGCAGCTGCCGCCGAACCCGCCGATCACGCCGCAGCTC-------C 72
                      *    *   * ** *     * **     **  *    **  **   *  *        *

consensus_6376#1      CGAACAAGGAACGGAGGGTGTAGCAAAGAAACAA-GTTGCTTGGCAACCCGCTAGTTTTT 204
consensus_6376#3      CGAACAAGGAACGGAGGGTGTAGCAGAGAAACAATGCTGCATCGCAACCCGCTAGCTCTT 140
consensus_6376#0      CGAACAAGGAACGGAGGGTGTAGCAGAGAAACAA-GCTGCATCGCAACCCGCTAGCTCTT 1016
consensus_6376#2      CGANCTGAGGACTCACTCCGCTGGCGCCAGGTGCAGAGGCTTCGCCGCC-GCCCACTCGC 131
                      *** *   * **  *    *  *     *      *  ** * **  ** **    *   

consensus_6376#1      GGATATGTTCATTTGAATCCTGTGTATAGAACTGTGCCATGTATAGGTATAGATGCCAAT 264
consensus_6376#3      CGATCTGATCATCTGAATCCTGTGTATAGAACTGTGCCATGTATACGTATAGATGACAAT 200
consensus_6376#0      CGATCTGATCATCTGAATCCTGTGTATAGAACTGTGCCATGTATACGTATAGATGACAAT 1076
consensus_6376#2      AGCCGCCTGCAGCCGGG---CGCCCGGACGAGCCTGCCGCGGAGCGTCACCGAAGCAACC 188
                       *       **   *      *     *  *   ****  * *     *  ** *  *  

consensus_6376#1      AAACATCAC-TGGACACTATTAGCCAGTTAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA 323
consensus_6376#3      AAACATCAC-TGGACACGATTAGCCAGTTAGCAAAAAAAAAAAAAAAAAA---------- 249
consensus_6376#0      AAACATCAC-TGGACACGATTAGCCAGTTAGCACACTGTAAATTTTTTGGGGAAAAATGA 1135
consensus_6376#2      GGAGATCGCGCAGACGCAGGTNCAGACTCTACAACCTCAGGAGGAGCCGCANGAGGGGGC 248
                        * *** *   *** *   *    * *   **        *                  

consensus_6376#1      AAAAAAAAAAAAAAAAAAA 342
consensus_6376#3      -------------------
consensus_6376#0      ATCAGAGTT---------- 1144
consensus_6376#2      CGGGGTCGCGG-------- 259