|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6379#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 771 fasta sequence
[CAGTCGTTGTGCAGAGGAGAGTCTCCTTTGCTTCCCAAGTTGCCATCCATGGCCGCCAAGGTGTACAAGCCGGCCGCCGAGGTCAATCTCGGCCCGGACAGCGACGAGTTCTACATCAGCCCTAACGTCAAAGCTCCTCGGGTAGCAGGGCTGCTGGTGAAGATCTTCGTGTGGATTCTTGAGATGCCGATCATCGGCTCAATGGTGCTTTACATCCTCAAGAAGGATAATCTCATCAACAAGCTTGTCCAAGATGCTGAAATCCCAGAGCCTCCACTGTTCAC-TTCCACACACAGCTGGGAAGACATTCCAGAGCAGAATGTGTGCCTGACGAAGCCGGACCTGTCG-CCGCCGGAGCG-TGTCCAGGAAGCCGTC-AGC-TGCCTCCCTGCGAGCCTCG-AATCGACCCTCGCCGGCTCGCCGCCGTCGAGCCCGAAACGCTGGACGATCAGGGATTTCAACAGGGCGTACAGCTCAGGGGAGGTCACTCCTGTTCAGGTTGCAAAGAGGTTCTTGGCTGCAGTGAAGGAGTGCTCAGGCCCAGGCCTCAACATGGCCTTCTTCATCAGCTACAGCCCTGAAGACATCATCAGGCAGGCTGAAGAATCCACCCTGAGATACCAGAGAGGGACACCTCTGTCTGCCATGGACGGGATACTGGTCGCTGTCAAGGACGAGATCGACTGTTTGCCCTACCCAACCACAGGCGGGACGCGGTGGCTGGGGCGGGCGCGGGCGTGCGCGGCGGACGCTGCGGTGGTGGCGCAACTGCTC]
[+] EMBL CB684669 [CAGTCCCTTTGCAGAGGAGAGTCTCCTTTGCTTCCCAAGTTGCCATCCATGGCCGCCAAGGTGTACAAGCCGGCCGCCGAGGTCAATCTCGGCCCGGACAGCGACGAGTTCTACATCAGCCCTAACGTCAAAGCTCCTCGGGTAGCAGGGCTGCTGGTGAAGATCTTCGTGTGGATTCTTGAGATGCCGATCATCGGCTCAATGGTGCTTTACATCCTCAAGAAGGATAATCTCATCAACAAGCTTGTCCAAGATGCTGAAATCCCAGAGCCTCCACTGTTCAC TTCCACACACAGCTGGGAAGACATTCCAGAGCAGAATGTGTGCCTGACGAAGCCGGACCTGTCG CCGCCGGAGCG TGTCCAGGAAGCCGTC AGC TGCCTCCCTGCGAGCCTCG AATCGACCCTCGCCGGCTCGCCGCCGTCGAGCCCGAAACGCTGGACGATCAGGGATTTCAACAGGGCGTACAGCTCAGGGGAGGTCACTCCTGTTCAGGTTGCAAAGAGGTTCTTGGCTGCAGTGAAGGAGTGCTCAGGCCCAGGCCTCAACATGGCCTTCTTCATCAGCTACAGCCCTGAAGACATCATCAGGCAGGCTGAAGAATCCACCCTGAGATACCAGAGAGGGACACCTCTGTCTGCCATGGACGGGATACTGGTCGCTGTCAAGGACGAGATCGACTGTTTGCCCTACCCAACCACAGGCGGGACGCGGTGGCTGGGGCGGGCGCGGGCGTGCGCGGCGGACGCTGCGGTGGTGGCGCAACTGCTC]
[+] EMBL C73741 [CAGTCGTTGTGCAGAGGAGAGTCTCCTTTGCTTCCCAAGTTGCCATCCATGGCCGCCAAGGTGTACAAGCCGGCCGCCGAGGTCAATCTCGGCCCGGACAGCGACGAGTTCTACATCAGCCCTAACGTCAAAGCTCCTCGGGTAGCAGGGCTGCTGGTGAAGATCTTCGTGTGGATTCTTGAGATGCCGATCATCGGCTCAATGGTGCTTTACATCCTCAAGAAGGATAATCTCATCAACAAGCTTGTCCAAGATGCTGAAATCCCAGAGCCTCCACTGTTCAC TTCCACACACAGCTGGGAAGACATTCCAGAGCAGAATGTGTGCCTGACGAAGCCGGACCTGTCG CCGCCGGAGCG TGTCCAGGAAGCCGTC AGCTTGCCTCCCTGCGAGCCTTGAAATCGACCCTTGCCGGCTNGCCG CGTCGAGCCCGAAACGt ]
[+] EMBL C73745 [ AGTCGTTGTGCAGAGGAGAGTCTCCTTTGCTTCCCAAGTTGCCATCCATGGCCGCCAAGGTGTACAAGCCGGCCGCCGAGGTCAATCTCGGCCCGGACAGCGACGAGTTCTACATCAGCCCTAACGTCAAAGCTCCTCGGGTAGCAGGGCTGCTGGTGAAGATCTTCGTGTGGATTCTTGAGATGCCGATCATCGGCTCAATGGTGCTTTACATCCTCAAGAAGGATAATCTCATCAACAAGCTTGTCCAAGATGCTGAAATCCCAGAGCCTCCACTGTTCACTTTCCACACACAGCTGGGAAGACATTNCAGAGCAGAATGTGTGCCTGACGAAGCCGGACCTGTCGCCCGCCGGAGCGTTGTCCAGGAAGCCGTCAAGT TGCCTtc ]
consensusID : consensus_6379#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence
[GCAGTTTCGTCAGAGGCGGAGCGAAGCCGGGTCCCACGTGAGATATTAGTGGGTGAGAGTGGTTTGCGGGAATTAAATGGAGGCGATTTGTTTGCCTCGCGTGGTAGGGACTTGTCAGGTCGGAATACATTACTGTAGAAGACTAGTAGTTGGTTATCGGCCATTGTAGCGCCCCATTATTAAATCCTAGAAATTGCAAAAAATTATCAAGAACAGCTCCATTGTTTCAGGTTGCAAATAGGTTTTTGGGTGCAATGAAGGAGTGCTCAGGCACAGGCCTCAACATGGCCTTTTTTATCAGCTACAGCCCTGAAGACATTATCAGGCAGGCTGAAGAATCCCCCCTGAGATTCCAGAGAGGTTAAAAAAAAGAACATTCTTTTACCCTGAAATTAAGTTACAGTTGGCAGTAACAGTATTTGAAGCAAGAGCAATGCATGGAAGTTGCAATTATCATCAGCAGAAGCAGCAGCCCACAGGAATGGCCTGAACTTGTCCCTTTCAAACCAACTCACCACCACCTTTTTGTTTTGACCTCTAGCCAGCCAACCAAACTTTTTTGTACCCCCTTGGTAACAACCAGGAGGCAGTTCAACTTCAGCTACATACACAAGCAACCCTCCAAACAATTTTTTCAGTTTTTTTTTTTCTGTTTTGACATCTTGAAAAAAAAAAAAAA]
[-] EMBL CA760450 [GCAGTTTCGTCAGAGGCGGAGCGAAGCCGGGTCCCACGTGAGATATTAGTGGGTGAGAGTGGTTTGCGGGAATTAAATGGAGGCGATTTGTTTGCCTCGCGTGGTAGGGACTTGTCAGGTCGGAATACATTACTGTAGAAGACTAGTAGTTGGTTATCGGCCATTGTAGCGCCCCATTATTAAATCCTAGAAATTGCAAAAAATTATCAAGAACAGCTCCATTGTTTCAGGTTGCAAATAGGTTTTTGGGTGCAATGAAGGAGTGCTCAGGCACAGGCCTCAACATGGCCTTTTTTATCAGCTACAGCCCTGAAGACATTATCAGGCAGGCTGAAGAATCCCCCCTGAGATTCCAGAGAGGTTAAAAAAAAGAACATTCTTTTACCCTGAAATTAAGTTACAGTTGGCAGTAACAGTATTTGAAGCAAGAGCAATGCATGGAAGTTGCAATTATCATCAGCAGAAGCAGCAGCCCACAGGAATGGCCTGAACTTGTCCCTTTCAAACCAACTCACCACCACCTTTTTGTTTTGACCTCTAGCCAGCCAACCAAACTTTTTTGTACCCCCTTGGTAACAACCAGGAGGCAGTTCAACTTCAGCTACATACACAAGCAACCCTCCAAACAATTTTTTCAGTTTTTTTTTTTCTGTTTTGACATCTTGAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6379#0 CAGTCGTTGTGCAGAGGAGAGTCTCCTTTGCTTCCCAAGTTGCCATCCATGGCCGCCAAG 60
consensus_6379#1 -----------------GCAGTTTCGTCAGAGGCG-GAGCGA--AGCCGGGTCCCACGTG 40
*** ** * * * ** * ** * ** * *
consensus_6379#0 GTGTACAAGCCGGCCGCCGAGGTCAATCTCGGCCCGGACAGCGACGAGTTCTACATCAGC 120
consensus_6379#1 AGATATTAGTGGGTGAGAGTGGTTTG-CGGGAATTAAATGGAGGCGATTTGTTTGCC--T 97
** ** ** * *** * * * * * *** ** * *
consensus_6379#0 CCTAACGTCAAAGCTCCTCGGGTAGCAGGGC--TGCTGGTGAAGATCTTCGTGTGGATTC 178
consensus_6379#1 CGCGTGGTAGGGACTTGTCAGGTCGGAATACATTACTGTAGAAGA-CTAGTAGTTGGTTA 156
* ** ** ** *** * * * * *** ***** ** ** * **
consensus_6379#0 TTGAGATGCCGATCATCGGCTCAATGGTGCTTTACATCCTCAAGAAGG-ATAATCTCATC 237
consensus_6379#1 TCG-GCCATTG--TAGCGCCCCATTA-----TTAAATCCTAGAAATTGCAAAAAATTATC 208
* * * * * ** * ** * *** ***** * * * * ** * ***
consensus_6379#0 AACAAGCTTGTCCAAGATGCTGAAATCCCAGAGCCTCCACTGTTCACTTCCACACACAGC 297
consensus_6379#1 AA-GAACAGCTCCATTGT-TTCAGGTTGCAAA---TAGGTTTTTGGGTGCAATGAAGGAG 263
** * * **** * * * * ** * * * ** * * * *
consensus_6379#0 TGGGAAGACATTCCAGAGCAGAATGTGTGCCTGACGAAGCCGGACCTGTCGCCGCCGGAG 357
consensus_6379#1 TGCTCAGGCA---CAGGCCTCAACATG-GCCTTTTTTATCAG---CTACAGCCCTGAAGA 316
** ** ** *** * ** ** **** * * * ** ***
consensus_6379#0 CGTGTCCAGGAAGCCGTCAGCTGCCTCCCTGCGAGCCTCGAA----TCGACCCTCGCCGG 413
consensus_6379#1 CATTATCAGGCAGGCTGAAGAATCCCCCCTGAGATTCCAGAGAGGTTAAAAAAAAGAACA 376
* * **** ** * ** ** ***** ** * ** * * *
consensus_6379#0 CTCGCCGCCGTCGAGCCCGAA--ACGCTGGACGATCAGGGATTTCAACAGGGCGTACAGC 471
consensus_6379#1 TTCTTTTACCCTGAAATTAAGTTACAGTTGGCAGTAACAGTATTTGA-AGCAAGAGCAAT 435
** * ** * ** * * * * * * ** * ** * **
consensus_6379#0 TCAGGGGAGGT-CACTCCTGTTCAGGTTGCAAAGAGGTTCTTGGCTGCAGTGAAGGAGTG 530
consensus_6379#1 GCATGGAAGTTGCAATTATCATCAGCAGAAGCAGCAGCCCACAGGAATGGCCTGAACTTG 495
** ** ** * ** * * **** ** * * * * **
consensus_6379#0 CTCAGGCCCAGGC--CTCAACATGGCCTTCTTCATCAGCTACAGCCCTGAAGACATCATC 588
consensus_6379#1 TCCCTTTCAAACCAACTCACCACCACCTTTTTGTTTTG----ACCTCTAGCCAGCCAACC 551
* * * * **** ** **** ** * * * * ** * * *
consensus_6379#0 AGGCAGGCTGAAGAATCCACCCTGAGATACCAGAGAGGGACACCTCTGTCTGCCATGGAC 648
consensus_6379#1 AAACT--TTTTTGTACCCCCTTGGTAACAACCAGGAGGCAGTTCAACTTCAGCTACATAC 609
* * * * * ** * * * * * **** * * ** ** * **
consensus_6379#0 GGGATACTGGTCGCTGTCAAGGACGAGATCGACTGTTTGCCCTACCCAACCACAGGCGGG 708
consensus_6379#1 ---ACAAGCAACCCTCCAAACAATTTTTTCAGTTTTTTTTTTTCTGTTTTGACATCTTGA 666
* * * ** ** * ** * *** * *** *
consensus_6379#0 ACGCGGTGGCTGGGGCGGGCGCGGGCGTGCGCGGCGGACGCTGCGGTGGTGGCGCAACTG 768
consensus_6379#1 AAAAAAAAAAAAA----------------------------------------------- 679
*
consensus_6379#0 CTC 771
consensus_6379#1 ---
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||