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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6380#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1792 fasta sequence
[CGCGTCTGACCTGAGCCCCCTCGCTTTCCTGCGCCCGGTGCCCGATGCCGCTCGCCGGCATCGCCCTCGCGCCTCTCTTCGTCTCCCACCTCGCGCCTCCACATCATCGCCGCAGCAGCGTTGCTTCCGCCGCCGCCGCCGCCGCGAGAAGGAGGCCGCGCGCGGTTCAGTGCTCCGCTACCGCTACTGCCGCGTCCGGTGAAGGCGCAGGAGACGACGTTGAGCTCTCCCGAGGGACGCTGCTCTGGAGGGCGGCAAAGCTGCCAATCTACTCCGTGGCGCTTGTGCCACTCACGGTTGGAAGCGCCTGTGCTTACCATCATGTGGGTTCATTCTTTGGTAAACGGTATTTTGTTCTCTTGGTTGCATCGGTCCTTGTGATCACTTGGCTCAATCTAAGCAATGATGTTTACGATTCAGATACTGGGGCTGATAAGAACAAGAAGGAATCTGTTGTTAACATCGTTGGCAGTCGAACGATGACGCAATATGCTGCAAATATTTCTCTCCTGTTCGGATTTATGGGGCTATTTTGGGCCTTTGCCCAAGCTGGGGATGCCAGGTTCATTTTATCGGTAACCTGTGCAATCATCTGTGGCTATGTTTATCAGTGCCCACCATTCCGACTAAGTTACAGGGGACTAGGTGAACCATTATGTTTTGCTGCATTTGGTCCATTGGCAACCACAGCTTTCTACTTCTCAAACAGCAGCAGAAACATTTCCAGCGGAACAGCTCTTCTCCCTCTCAGTAAAACAGTCATTGCTTCATCCATTCTAGTTGGGCTGACGACTACCCTGATACTCTTCTGCAGCCATTTTCATCAGATTGATGGAGATCGTGCTGTTGGGAAAATGTCTCCCCTGGTAAGAATTGGCACCAAAACAGGATCAAGATTAGTGACTCTTGGGGTTGTCACGCTTTATGTTCTTTTGGCTGCTTTTGGCATGAGCAAATCTCTTCCATCAGCTTGCACTGTCCTTTGTGCCTTGACACTCCCTGTGGGCAAATGGGTTGTGGACTATGTGCTGAAAAACCATGAAGACAACAGCAAGATTTTCATGGCAAAGTATTACTGTGTTCGGCTACATGCTCTGTTTGGGATGGCACTGGCTTCTGGTTTAGTCTTGGCTAGAAATGGCACACTGGTCTGACAGACGACCAACCTTGACATCCTTGTGAAGACCCAGAGCAGACCGCCGTCTTGCAGTTTCAGACTG-AGTACCTCC-AGTAGCTGTTTGGTTCCAGAGCAAGCTTGAACGACGAGTGCAATGGCAGTGCAATTGTGCAGCCATTTGGCAGCTAGATTGGGTAGGCAGAGCGAATCAGAGAAAGAAGCACAGGTTTGGAAGCACTGCCAGCCAAGGCAGTGGAGAGTGTAGAGGATGGTAAATTGCCTGAAACCGGAATGAATGGAGAGGTACTTGAGTTGTTGGCTACAGAATCCCAGTCATTTATCTCCATGAGAAAAAAAGCCCAGCTATGCATTTCTTCCCATCGCAGTAAAGATTGCCGTTGCACAGGAGGCTCCCAGTGTGAATTGATTTTCATGCCGGGACAGATAGGACATGTCATGTTCTACCATTACTTCTTCCTCCCAAGCACCAACAGCTATTTGGTAGTACACCACTCATCTGGGCAGTTTCGCATGTGCCTTTAACACTTCTAGTTTCCTGGCTAGTGATTTGTGATATTACTTTTACAGATTTTCTGAGTTTATGGGTGGGAGATGAGTTGGTTCATGATTTTTTTTCTCTGTTTTTAAACTCATGAATTCCTTAATTCTAAAAAC]
[+] EMBL AK061907 [CGCGTCTGACCTGAGCCCCCTCGCTTTCCTGCGCCCGGTGCCCGATGCCGCTCGCCGGCATCGCCCTCGCGCCTCTCTTCGTCTCCCACCTCGCGCCTCCACATCATCGCCGCAGCAGCGTTGCTTCCGCCGCCGCCGCCGCCGCGAGAAGGAGGCCGCGCGCGGTTCAGTGCTCCGCTACCGCTACTGCCGCGTCCGGTGAAGGCGCAGGAGACGACGTTGAGCTCTCCCGAGGGACGCTGCTCTGGAGGGCGGCAAAGCTGCCAATCTACTCCGTGGCGCTTGTGCCACTCACGGTTGGAAGCGCCTGTGCTTACCATCATGTGGGTTCATTCTTTGGTAAACGGTATTTTGTTCTCTTGGTTGCATCGGTCCTTGTGATCACTTGGCTCAATCTAAGCAATGATGTTTACGATTCAGATACTGGGGCTGATAAGAACAAGAAGGAATCTGTTGTTAACATCGTTGGCAGTCGAACGATGACGCAATATGCTGCAAATATTTCTCTCCTGTTCGGATTTATGGGGCTATTTTGGGCCTTTGCCCAAGCTGGGGATGCCAGGTTCATTTTATCGGTAACCTGTGCAATCATCTGTGGCTATGTTTATCAGTGCCCACCATTCCGACTAAGTTACAGGGGACTAGGTGAACCATTATGTTTTGCTGCATTTGGTCCATTGGCAACCACAGCTTTCTACTTCTCAAACAGCAGCAGAAACATTTCCAGCGGAACAGCTCTTCTCCCTCTCAGTAAAACAGTCATTGCTTCATCCATTCTAGTTGGGCTGACGACTACCCTGATACTCTTCTGCAGCCATTTTCATCAGATTGATGGAGATCGTGCTGTTGGGAAAATGTCTCCCCTGGTAAGAATTGGCACCAAAACAGGATCAAGATTAGTGACTCTTGGGGTTGTCACGCTTTATGTTCTTTTGGCTGCTTTTGGCATGAGCAAATCTCTTCCATCAGCTTGCACTGTCCTTTGTGCCTTGACACTCCCTGTGGGCAAATGGGTTGTGGACTATGTGCTGAAAAACCATGAAGACAACAGCAAGATTTTCATGGCAAAGTATTACTGTGTTCGGCTACATGCTCTGTTTGGGATGGCACTGGCTTCTGGTTTAGTCTTGGCTAGAAATGGCACACTGGTCTGACAGACGACCAACCTTGACATCCTTGTGAAGACCCAGAGCAGACCGCCGTCTTGCAGTTTCAGACTG AGTACCTCC AGTAGCTGTTTGGTTCCAGAGCAAGCTGGAACGACGAGTGCAATGGCAGTGCAATTGTGCAGCCATTTGGCAGCTAGATTGGGTAGGCAGAGCGAATCAGAGAAAGAAGCACAGGTTTGGAAGCACTGCCAGCCAAGGCAGTGGAGAGTGTAGAGGATGGTAAATTGCCTGAAACCGGAATGAATGGAGAGGTACTTGAGTTGTTGGCTACAGAATCCCAGTCATTTATCTCCATGAGAAAAAAAGCCCAGCTATGCATTTCTTCCCATCGCAGTAAAGATTGCCGTTGCACAGGAGGCTCCCAGTGTGAATTGATTTTCATGCCGGGACAGATAGGACATGTCATGTTCTACCATTACTTCTTCCTCCCAAGCACCAACAGCTATTTGGTAGTACACCACTCATCTGGGCAGTTTCGCATGTGCCTTTAACACTTCTAGTTTCCTGGCTAGTGAT ]
[+] EMBL AK066332 [ TGAGCCCCCTCGCTTTCCTGCGCCCGGTGCCCGATGCCGCTCGCCGGCATCGCCCTCGCGCCTCTCTTCGTCTCCCACCTCGCGCCTCCACATCATCGCCGCAGCAGCGTTGCTTCCGCCGCCGCCGCCGCCGCGAGAAGGAGGCCGCGCGCGGTTCAGTGCTCCGCTACCGCTACTGCCGCGTCCGGTGAAGGCGCAGGAGACGACGTTGAGCTCTCCCGAGGGACGCTGCTCTGGAGGGCGGCAAAGCTGCCAATCTACTCCGTGGCGCTTGTGCCACTCACGGTTGGAAGCGCCTGTGCTTACCATCATGTGGGTTCATTCTTTGGTAAACGGTATTTTGTTCTCTTGGTTGCATCAGTCCTTGTGATCACTTGGCTCAATCTAAGCAATGATGTTTACGATTCAGATACTGGGGCTGATAAGAACAAGAAGGAATCTGTTGTTAACATCGTTGGCAGTCGAACGATGACGCAATATGCTGCAAATATTTCTCTCCTGTTCGGATTTATGGGGCTATTTTGGGCCTTTGCCCAAGCTGGGGATGCCAGGTTCATTTTATCGGTAACCTGTGCAATCATCTGTGGCTATGTTTATCAGTGCCCACCATTCCGACTAAGTTACAGGGGACTAGGTGAACCATTATGTTTTGCTGCATTTGGTCCATTGGCAACCACAGCTTTCTACTTCTCAAACAGCAGCAGAAACATTTCCAGCGGAACAGCTCTTCTCCCTCTCAGTAAAACAGTCATTGCTTCATCCATTCTAGTTGGGCTGACGACTACCCTGATACTCTTCTGCAGCCATTTTCATCAGATTGATGGAGATCGTGCTGTTGGGAAAATGTCTCCCCTGGTAAGAATTGGCACCAAAACAGGATCAAGATTAGTGACTCTTGGGGTTGTCACGCTTTATGTTCTTTTGGCTGCTTTTGGCATGAGCAAATCTCTTCCATCAGCTTGCACTGTCCTTTGTGCCTTGACACTCCCTGTGGGCAAATGGGTTGTGGACTATGTGCTGAAAAACCATGAAGACAACAGCAAGATTTTCATGGCAAAGTATTACTGTGTTCGGCTACATGCTCTGTTTGGGATGGCACTGGCTTCTGGTTTAGTCTTGGCTAGAAATGGCACACTGGTCTGACAGACGACCAACCTTGACATCCTTGTGAAGACCCAGAGCAGACCGCCGTCTTGCAGTTTCAGACTG AGTACCTCC AGTAGCTGTTTGGTTCCAGAGCAAGCTTGAACGACGAGTGCAATGGCAGTGCAATTGTGCAGCCATTTGGCAGCTAGATTGGGTAGGCAGAGCGAATCAGAGAAAGAAGCACAGGTTTGGAAGCACTGCCAGCCAAGGCAGTGGAGAGTGTAGAGGATGGTAAATTGCCTGAAACCGGAATGAATGGAGAGGTACTTGAGTTGTTGGCTACAGAATCCCAGTCATTTATCTCCATGAGAAAAAAAGCCCAGCTATGCATTTCTTCCCATCGCAGTAAAGATTGCCGTTGCACAGGAGGCTCCCAGTGTGAATTGATTTTCATGCCGGGACAGATAGGACATGTCATGTTCTACCATTACTTCTTCCTCCCAAGCACCAACAGCTATTTGGTAGTACACCACTCATCTGGGCAGTTTCGCATGTGCCTTTAACACTTCTAGTTTCCTGGCTAGTGATTTGTGATATTACTTTTACAGATTTTCTGAGTTTATGGGTGGGAGATGAGTTGGTTCATGATTTTTTTTCTCTGTTTTTAAACTCATGAATTCCTTAATTCTAAAAAC]
[+] EMBL OS1643A [ GGTAAGAATTGGCACCAAAACAGGATCAAGATTAGTGACTCTTGGGGTTGTCACGCTTTATGTTCTTTTGGCTGCTTTTGGCATGAGCAAATCTCTTCCATCAGCTTGCACTGTCCTTTGTGCCTTGACACTCCCTGTGGGCAAATGGGTTGTGGACTATGTGCTGAAAAACCATGAAGACAACAGCAAGATTTTCATGGCAAAGTATTACTGTGTTCGGCTACATGCTCTGTTTGGGATGGCACTGGCTTCTGGTTTAGTCTTGGCTAGAAATGGCACACTGGTCTGACAGACGNCCAACCTTGACATCCTTGTGAAGGCCCAGAGCAGACCGNCGTCTTGCAGTTTCAGNCTGNAGTACCTCCAAGTAGCTGTTCGG TNCAGAGCAAGCTTGGACGTCGAGTGAANTGGCAGTGCA ]
consensusID : consensus_6380#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence
[GCTTGTGCCACTCACGGTTGGAAGCGCCTGTGCTTACCATCATGTGGGTTCATTCTTTGGTAAACGGTATTTTGTTCTCTTGGTTGCATCAGTCCTTGTGATCACTTGGCTCAATCTAAGCAATGATGTTTACGATTCAGATACTGGGGCTGATAAGAACAAGAAGGAATCTGTTGTTAACATCGTTGGCAGTCGAACGATGACGCAATATGCTGCAAATATTTCTCTCCTGTTCGGATTTATGGGGCTATTTTGGGCCTTTGCCCAAGCTGGGGATGCCAGGTTCATTTTATCGGTAACCTGTGCAATCATCTGTGGCTATGTTTATCAGTGCCCACCATTCCGACTAAGTTACAGGGGACTAGGTGAACCATTATGTTTTGCTGCATTTGGTCCATTGGCAACCACAGCTTTCTACTTCTCAAACAGCAGCAGAAACATTTCCAGGTATCCTCTAAAGCAAGAAGGTTCCCACTATTACTTTCACTTCCAAGGGGATATAATGGCCATTTGCACCTACATTATTTGTCTTGAGATGCTTCAATTACAG]
[+] EMBL CF326394 [GCTTGTGCCACTCACGGTTGGAAGCGCCTGTGCTTACCATCATGTGGGTTCATTCTTTGGTAAACGGTATTTTGTTCTCTTGGTTGCATCAGTCCTTGTGATCACTTGGCTCAATCTAAGCAATGATGTTTACGATTCAGATACTGGGGCTGATAAGAACAAGAAGGAATCTGTTGTTAACATCGTTGGCAGTCGAACGATGACGCAATATGCTGCAAATATTTCTCTCCTGTTCGGATTTATGGGGCTATTTTGGGCCTTTGCCCAAGCTGGGGATGCCAGGTTCATTTTATCGGTAACCTGTGCAATCATCTGTGGCTATGTTTATCAGTGCCCACCATTCCGACTAAGTTACAGGGGACTAGGTGAACCATTATGTTTTGCTGCATTTGGTCCATTGGCAACCACAGCTTTCTACTTCTCAAACAGCAGCAGAAACATTTCCAGGTATCCTCTAAAGCAAGAAGGTTCCCACTATTACTTTCACTTCCAAGGGGATATAATGGCCATTTGCACCTACATTATTTGTCTTGAGATGCTTCAATTACAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6380#0 CGCGTCTGACCTGAGCCCCCTCGCTTTCCTGCGCCCGGTGCCCGATGCCGCTCGCCGGCA 60
consensus_6380#1 ------------------------------------------------------------
consensus_6380#0 TCGCCCTCGCGCCTCTCTTCGTCTCCCACCTCGCGCCTCCACATCATCGCCGCAGCAGCG 120
consensus_6380#1 ------------------------------------------------------------
consensus_6380#0 TTGCTTCCGCCGCCGCCGCCGCCGCGAGAAGGAGGCCGCGCGCGGTTCAGTGCTCCGCTA 180
consensus_6380#1 ------------------------------------------------------------
consensus_6380#0 CCGCTACTGCCGCGTCCGGTGAAGGCGCAGGAGACGACGTTGAGCTCTCCCGAGGGACGC 240
consensus_6380#1 ------------------------------------------------------------
consensus_6380#0 TGCTCTGGAGGGCGGCAAAGCTGCCAATCTACTCCGTGGCGCTTGTGCCACTCACGGTTG 300
consensus_6380#1 ----------------------------------------GCTTGTGCCACTCACGGTTG 20
********************
consensus_6380#0 GAAGCGCCTGTGCTTACCATCATGTGGGTTCATTCTTTGGTAAACGGTATTTTGTTCTCT 360
consensus_6380#1 GAAGCGCCTGTGCTTACCATCATGTGGGTTCATTCTTTGGTAAACGGTATTTTGTTCTCT 80
************************************************************
consensus_6380#0 TGGTTGCATCGGTCCTTGTGATCACTTGGCTCAATCTAAGCAATGATGTTTACGATTCAG 420
consensus_6380#1 TGGTTGCATCAGTCCTTGTGATCACTTGGCTCAATCTAAGCAATGATGTTTACGATTCAG 140
********** *************************************************
consensus_6380#0 ATACTGGGGCTGATAAGAACAAGAAGGAATCTGTTGTTAACATCGTTGGCAGTCGAACGA 480
consensus_6380#1 ATACTGGGGCTGATAAGAACAAGAAGGAATCTGTTGTTAACATCGTTGGCAGTCGAACGA 200
************************************************************
consensus_6380#0 TGACGCAATATGCTGCAAATATTTCTCTCCTGTTCGGATTTATGGGGCTATTTTGGGCCT 540
consensus_6380#1 TGACGCAATATGCTGCAAATATTTCTCTCCTGTTCGGATTTATGGGGCTATTTTGGGCCT 260
************************************************************
consensus_6380#0 TTGCCCAAGCTGGGGATGCCAGGTTCATTTTATCGGTAACCTGTGCAATCATCTGTGGCT 600
consensus_6380#1 TTGCCCAAGCTGGGGATGCCAGGTTCATTTTATCGGTAACCTGTGCAATCATCTGTGGCT 320
************************************************************
consensus_6380#0 ATGTTTATCAGTGCCCACCATTCCGACTAAGTTACAGGGGACTAGGTGAACCATTATGTT 660
consensus_6380#1 ATGTTTATCAGTGCCCACCATTCCGACTAAGTTACAGGGGACTAGGTGAACCATTATGTT 380
************************************************************
consensus_6380#0 TTGCTGCATTTGGTCCATTGGCAACCACAGCTTTCTACTTCTCAAACAGCAGCAGAAACA 720
consensus_6380#1 TTGCTGCATTTGGTCCATTGGCAACCACAGCTTTCTACTTCTCAAACAGCAGCAGAAACA 440
************************************************************
consensus_6380#0 TTTCCAGCGGAACAGCTCTTCTCCCTCTCAGTAAAACAGTCATTGCTTCATCCATTCTAG 780
consensus_6380#1 TTTCCAGG--------TATCCTCTAAAGCAAGAAGGTTCCCACTATTACTTTCACTTCCA 492
******* * * *** ** ** ** * * * * ** *
consensus_6380#0 TTGGGCTGACGACTACCCTGATACTCTTCTGCAGCCATTTTCATCAGATTGATGGAGATC 840
consensus_6380#1 AGGGGATA----------TAATGGCCATTTGCACCTACATTATTTGTCTTGA-GATGCTT 541
*** * * ** * * **** * * ** * **** * * *
consensus_6380#0 GTGCTGTTGGGAAAATGTCTCCCCTGGTAAGAATTGGCACCAAAACAGGATCAAGATTAG 900
consensus_6380#1 CAATTACAG--------------------------------------------------- 550
* *
consensus_6380#0 TGACTCTTGGGGTTGTCACGCTTTATGTTCTTTTGGCTGCTTTTGGCATGAGCAAATCTC 960
consensus_6380#1 ------------------------------------------------------------
consensus_6380#0 TTCCATCAGCTTGCACTGTCCTTTGTGCCTTGACACTCCCTGTGGGCAAATGGGTTGTGG 1020
consensus_6380#1 ------------------------------------------------------------
consensus_6380#0 ACTATGTGCTGAAAAACCATGAAGACAACAGCAAGATTTTCATGGCAAAGTATTACTGTG 1080
consensus_6380#1 ------------------------------------------------------------
consensus_6380#0 TTCGGCTACATGCTCTGTTTGGGATGGCACTGGCTTCTGGTTTAGTCTTGGCTAGAAATG 1140
consensus_6380#1 ------------------------------------------------------------
consensus_6380#0 GCACACTGGTCTGACAGACGACCAACCTTGACATCCTTGTGAAGACCCAGAGCAGACCGC 1200
consensus_6380#1 ------------------------------------------------------------
consensus_6380#0 CGTCTTGCAGTTTCAGACTGAGTACCTCCAGTAGCTGTTTGGTTCCAGAGCAAGCTTGAA 1260
consensus_6380#1 ------------------------------------------------------------
consensus_6380#0 CGACGAGTGCAATGGCAGTGCAATTGTGCAGCCATTTGGCAGCTAGATTGGGTAGGCAGA 1320
consensus_6380#1 ------------------------------------------------------------
consensus_6380#0 GCGAATCAGAGAAAGAAGCACAGGTTTGGAAGCACTGCCAGCCAAGGCAGTGGAGAGTGT 1380
consensus_6380#1 ------------------------------------------------------------
consensus_6380#0 AGAGGATGGTAAATTGCCTGAAACCGGAATGAATGGAGAGGTACTTGAGTTGTTGGCTAC 1440
consensus_6380#1 ------------------------------------------------------------
consensus_6380#0 AGAATCCCAGTCATTTATCTCCATGAGAAAAAAAGCCCAGCTATGCATTTCTTCCCATCG 1500
consensus_6380#1 ------------------------------------------------------------
consensus_6380#0 CAGTAAAGATTGCCGTTGCACAGGAGGCTCCCAGTGTGAATTGATTTTCATGCCGGGACA 1560
consensus_6380#1 ------------------------------------------------------------
consensus_6380#0 GATAGGACATGTCATGTTCTACCATTACTTCTTCCTCCCAAGCACCAACAGCTATTTGGT 1620
consensus_6380#1 ------------------------------------------------------------
consensus_6380#0 AGTACACCACTCATCTGGGCAGTTTCGCATGTGCCTTTAACACTTCTAGTTTCCTGGCTA 1680
consensus_6380#1 ------------------------------------------------------------
consensus_6380#0 GTGATTTGTGATATTACTTTTACAGATTTTCTGAGTTTATGGGTGGGAGATGAGTTGGTT 1740
consensus_6380#1 ------------------------------------------------------------
consensus_6380#0 CATGATTTTTTTTCTCTGTTTTTAAACTCATGAATTCCTTAATTCTAAAAAC 1792
consensus_6380#1 ----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||