These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6391#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 844 fasta sequence [GCTTCCATCTGGTGTGCTTATTATAGGATCTCACACTCAAATGGACAGCCGCAAAGAGAAGGCCCACCCAGGTGGATTTCTTTTTACAAAGTTTGCTAGTAGCAGCCAGACGCTATTTGACCTTTTCCCGGATAGTTTTGGTAGTCGGTTGCATGAAAGGAACAAAGAAAGTCCGAAGGCAATGAAACATCTAAATAAACTTTTCCCTAACAAAATTTCGATCCAACTTCCACAGGATGAAACATTACTCACAGATTGGAAGCAACAACTGGATCGTGACGTTGAAACCCTTAAAGCTAAATCCAATGTT-GGTAGCATT-CGCACGTTTCT-GAGCCGCAAT-GGAATTGAAT-GCAGTGACCTT-GAAGAATTATT-CATCAAAGATCAATCACTGACCAACGAAAATGTGGACAAGATAGTTGGCTATGCTGTTAGTTATCACCTTAAGCACAATAAAGTCGAGATCTCCAAGGATGGTAAACTTGTATTGGCGAGCGAAAGCCTTAAGCATGGGCTCAACATGCTGCAGAATATGCAAAGTGATAACAAGAGCTCAAAAAAATCACTGAAGGATGTTGTCACAGAGAACGAATTTGAGAAAAGGCTTCTGGCAGATGTTATACCACCTAATGACATTGGAGTCACCTTTGATGATATTGGAGCCTTGGAAAATGTAAAAGACACATTGAAGGAGCTGGTGATGCTTCCTCTGCAAAGGCCTGAATTGTTCTGCAAAGGACAGCTAACGAAGCCTTGCAAGGGAATATTGCTGTTTGGACCTCCTGGTACTGGGAAAACCATGCTTGCTAAGGCAGTAGCAACTGAAGCAGGTGCTAACTTCATTAAC] [+] EMBL CB619553 [GCTTCCATCTGGTGTGCTTATTATAGGATCTCACACTCAAATGGACAGCCGCAAAGAGAAGGCCCACCCAGGTGGATTTCTTTTTACAAAGTTTGCTAGTAGCAGCCAGACGCTATTTGACCTTTTCCCGGATAGTTTTGGTAGTCGGTTGCATGAAAGGAACAAAGAAAGTCCGAAGGCAATGAAACATCTAAATAAACTTTTCCCTAACAAAATTTCGATCCAACTTCCACAGGATGAAACATTACTCACAGATTGGAAGCAACAACTGGATCGTGACGTTGAAACCCTTAAAGCTAAATCCAATGTT GGTAGCATT CGCACGTTTCT GAGCCGCAAT GGAATTGAAT GCAGTGACCTT GAAGAATTATT CATCAAAGATCAATCACTGACCAACGAAAATGTGGACAAGATAGTTGGCTATGCTGTTAGTTATCACCTTAAGCACAATAAAGTCGAGATCTCCAAGGATGGTAAACTTGTATTGGCGAGCGAAAGCCTTAAGCATGGGCTCAACATGCTGCAGAATATGCAAAGTGATAACAAGAGCTCAAAAAAATCACTGAAGGATGTTGTCACAGAGAACGAATTTGAGAAAAGGCTTCTGGCAGATGTTATACCACCTAATGACATTGGAGTCACCTTTGATGATATTGGAGCCTTGGAAAATGTAAAAGACACATTGAAGGAGCTGGTGATGCTTCCTCTGCAAAGGCCTGAATTGTTCTGCAAAGGACAGCTAACGAAGCCTTGCAAGGGAATATTGCTGTTTGGACCTCCTGGTACTGGGAAAACCATGCTTGCTAAGGCAGTAGCAACTGAAGCAGGTGCTAACTTCATTAAC] [+] EMBL C73103 [ ACAGCCGCAAAGAGAAGGCCCACCCAGGTGGATTTCTTTTTACAAAGTTTGCTAGTAGCAGCCAGACGCTATTTGACCTTTTCCCGGATAGTTTTGGTAGTCGGTTGCATGAAAGGAACAAAGAAAGTCCGAAGGCAATGAAACATCTAAATAAACTTTTCCCTAACAAAATTTCGATCCAACTTCCACAGGATGAAACATTACTCACAGATTGGAAGCAACAACTGGATCGTGACGTTGAAACCCTTAAAGCTAAATCCAATGTTGGGTAGCATTCCGCACGTTTCTGGAGCCGCAATGGGAATTGAATGGCAGTGACCTTGGAAG ATTATTCCATC AAGATCAATCACTGGGCCACG GAATGTGGGCAAGATAGTTGGC ATGCNGGTAGTTATC CCCTAAGC ] [+] EMBL OSS4571A [ TTGGCTATGCTGTTAGTTATCACCTTAAGCACAATAAAGTCGAGATCTCCAAGGATGGTAAACTTGTATTGGCGAGCGAAA NCTTAAGCATGGGCTCAACATGCTGCAGAATATGCAAAGTGATAACAAGAGCTCAAAAAAATCACTGAAGGATGTTGTCACAGAGAACGAATTTGAGAAAAGGCTTCTGGCAGATGTTATACCACCTAATGACATTGGAGTCACCTTTGATGATATTGGAGCCTTGGAAAATGTAAAAGACACATTGAAGGAGCTGGTGATGCTTCCTCTGCAAAGGCCTGAATTGTTCTGCAAAGGACAGCTAACGAGGCCTTGCAAGGGGAT ] consensusID : consensus_6391#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 788 fasta sequence [AATCCTTATCATTNATCGCTTGTTANGTNCNCTAAAAANTGATCCTGATGTGTGCTATGGTGTCTGTGTAGGCCCNCCCAGNTGATTTCTTTTACAAAGTTTGCTAGTAGCAGCCAGACGCTATTTGACCTTTTCCCGGTANCANTTTTCATTCTTATTGGTCACAATGTTCTTTCTATCAGTGCTTATAAATGCACTATATGAACCCATGGTTCTGATATAACTATCTGATGCATTGTTATATCTAAAATGCAGGATAGTTTTGGTAGTCGGGTTGCATGAAAGGAACAAAGAAAGTCCGAAGGCAATGAAACATCTAAATAAACTTTTCCCTAACAAAATTTCGATCCAACTTCCACAGGTGCTAATATCCCTTGTTATCTTGTTCAAGTATTATGCTCAAGTATATTATCTAATCCAAGCAACTGAATTTGCAGGATGAAACATTACTCACAGATTGGAAGCAACAACTGGATCGTGACGTTGAAACCCTTAAAGCTAAATCCAATGTTGGTAGCATTCGCACGGTAAGCTGTGCAGATAACACAATTTCACATATCATGCTTGGCACTTTGGGTTTTGAACCATGTATTCTGTATATTCCTCTTGAAACTGAAATTTCTTGTGTGCGATGCCTAGCCTAGACAGCTAGACCCTAAGCAGTGTTTTGTTTTAAACGACACTTTGCTCTTTTCCCCTCAAATGATCAATCATGCATGCATAAAGGTGTGCGATGCCTAGACAGCTAGACCCTAAGCAGTGTTTTGTTTTAAACGACACTTTGCTCT] [-] EMBL CB097072 [AATCCTTATCATTNATCGCTTGTTANGTNCNCTAAAAANTGATCCTGATGTGTGCTATGGTGTCTGTGTAGGCCCNCCCAGNTGATTTCTTTTACAAAGTTTGCTAGTAGCAGCCAGACGCTATTTGACCTTTTCCCGGTANCANTTTTCATTCTTATTGGTCACAATGTTCTTTCTATCAGTGCTTATAAATGCACTATATGAACCCATGGTTCTGATATAACTATCTGATGCATTGTTATATCTAAAATGCAGGATAGTTTTGGTAGTCGGGTTGCATGAAAGGAACAAAGAAAGTCCGAAGGCAATGAAACATCTAAATAAACTTTTCCCTAACAAAATTTCGATCCAACTTCCACAGGTGCTAATATCCCTTGTTATCTTGTTCAAGTATTATGCTCAAGTATATTATCTAATCCAAGCAACTGAATTTGCAGGATGAAACATTACTCACAGATTGGAAGCAACAACTGGATCGTGACGTTGAAACCCTTAAAGCTAAATCCAATGTTGGTAGCATTCGCACGGTAAGCTGTGCAGATAACACAATTTCACATATCATGCTTGGCACTTTGGGTTTTGAACCATGTATTCTGTATATTCCTCTTGAAACTGAAATTTCTTGTGTGCGATGCCTAGCCTAGACAGCTAGACCCTAAGCAGTGTTTTGTTTTAAACGACACTTTGCTCTTTTCCCCTCAAATGATCAATCATGCATGCATAAAGGTGTGCGATGCCTAGACAGCTAGACCCTAAGCAGTGTTTTGTTTTAAACGACACTTTGCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6391#0 --------GCTTCCATCTGGTGT-GCTTATTATAGGATCTCACACTCAAATGGACAGCCG 51 consensus_6391#1 AATCCTTATCATTNATCGCTTGTTANGTNCNCTAAAAANTGATCCTGATGTGTGCTATGG 60 * * *** *** * ** * * * ** * ** * * consensus_6391#0 CAAA-GAGAAGGCCCACCCAGGTGGATTTCTTTTTACAAAGTTTGCTAGTAGCAGCCAGA 110 consensus_6391#1 TGTCTGTGTAGGCCCNCCCAGNTGA--TTTCTTTTACAAAGTTTGCTAGTAGCAGCCAGA 118 * * ****** ***** ** ** ***************************** consensus_6391#0 CGCTATTTGACCTTTTCCCGGATAGTTTTGGTAGTCGGTTGCATGAAAGGAACAAAGAAA 170 consensus_6391#1 CGCTATTTGACCTTTTCCCGG----TANCANTTTTCATTCTTATTG--GTCACAATGTTC 172 ********************* * * ** * ** * **** * consensus_6391#0 GTCCGAAGGCAATGAAACATCTAAATAAACTTTTCCCTAACAAAATTTCGATCCAACTTC 230 consensus_6391#1 TTTCTAT--CAGTG---CTTATAAATGCACTATATGAACCCATGGTTCTGATATAACTAT 227 * * * ** ** * * ***** *** * ** ** *** **** consensus_6391#0 CACAGGATGAAACATTACTCACAGATTGGAAGCAACAACTGG--ATCGTGACGT-TGAAA 287 consensus_6391#1 CT---GATGCATTGTTATATCTAAAATGCAGGATAGTTTTGGTAGTCGGGTTGCATGAAA 284 * **** * *** * * ** * * * *** *** * * ***** consensus_6391#0 CCCTTAAAGCTAAATCCAATGTTGGT--AGCATTCGCACGTTTCTGAGCCGCAATGGAAT 345 consensus_6391#1 GGAACAAAGA-AAGTCCGAAGGCAATGAAACATCTAAATAAACTTTTCCCTAACAAAATT 343 **** ** *** * * * * *** * * ** * * * consensus_6391#0 TGAATGCAGTGACCTTGAAGAATTATTCATCAAAGATCAATCACTGACCAACGAAAATGT 405 consensus_6391#1 TCGATCCAACTTCCACAGGTGCTAAT--ATCCCTTGTTATC--TTGTTCAA--GTATTAT 397 * ** ** ** * ** *** * * ** *** * * * consensus_6391#0 GGACAAGATAGTTGGCTATGCTGTTAGTTATCACCTTAAGCACAATAAAGTCGAGATCTC 465 consensus_6391#1 GCTCAAGTATATTATCTAATCCA--AGCAACTGAATTT-GCAGGATGAAACATTACTCAC 454 * **** ** *** * ** * ** *** ** ** ** * consensus_6391#0 CAA--GGATGGTAAACTTGTATTGGCGAGC-GAAAGCCTTAAGCATGGGCTCAACATGCT 522 consensus_6391#1 AGATTGGAAGCAACAACTGGATCGTGACGTTGAAACCCTTAAAGCTAAATCCAATGT-TG 513 * *** * * * ** ** * * **** ****** * *** * consensus_6391#0 GCAGAATATGCAAAGTGATAACAAGAGCTCAAAAAAATCACTGAAGGATG-TTGTCACAG 581 consensus_6391#1 GTAGCATTCGCACGGTAAGCTGTGCAGATAACACAATTTCACATATCATGCTTGGCACTT 573 * ** ** *** ** * ** * * * ** * * *** *** *** consensus_6391#0 AGAACGAATTTGAGAAAAGGCTTCTGGCAGATGTTATACCACCTAATGACATTGGAGTCA 641 consensus_6391#1 TGGGT---TTTGAACCATGTATTCTG--------TATATT-CCTCTTGAAACTGAAATTT 621 * ***** * * ***** **** *** *** * ** * * consensus_6391#0 CCTTTG-ATGATATTGGAGCCTTGGAAAATGTAAAAGACACATTGAAGGAGCTGGTGATG 700 consensus_6391#1 CTTGTGTGCGATGCCT-AGCCTAGACAGCT-------AGACCCTAAG-----CAGTGTTT 668 * * ** *** ***** * * * * ** * * *** * consensus_6391#0 CTTCCTCTGCAAAGGCCTGAATTGTTCTGCAAAGGACAGCTAACGAAGCCT-TGCAAGGG 759 consensus_6391#1 TGTTTTAAACGACACTTTGCTCTTTTCCCCTCAA-ATGATCAATCATGCATGCATAAAGG 727 * * * * ** * *** * * * ** * ** * ** ** consensus_6391#0 AATATTGCTGTTTGGACCTCCTGGTACTGGGAAA-ACCATGCTTGCTAAGGCAGTAGCAA 818 consensus_6391#1 TGTGC-GATGCCTAGACAGCTAGACCCTAAGCAGTGTTTTGTTTTAAACGACACTTTGCT 786 * * ** * *** * * ** * * ** ** * * ** * consensus_6391#0 CTGAAGCAGGTGCTAACTTCATTAAC 844 consensus_6391#1 CT------------------------ 788 ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||