cluster # 6399

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Oryza sativa
cluster # 6399 cluster # 6399 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6399#0 length = 842 sequences # 3

consensus_6399#1 length = 198 sequences # 1

consensusID : consensus_6399#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 842
fasta sequence

                              [TGGCGGCGGCGGCGGCGGCAAGAGCTGCAGCGCGTGCAAGGTGGAGATGCAGCCGTGGCACTTCTGGCGGAAGTACGGGGCGAAGCAGTTCCAGGTGGACGGCAACGCCATCGACGTGGTGTGGGACCTGAGGAGCGCGAGGTTCTCCGATGGGCCGGAGCCGCTGTCCGACTACTACGTCGCGGTGGTCGCCGGCGAGGAGGTCGTCCTCCTCCTCGGCAACCTCAAGAAGGACGCGTTCCGGCGGACGGGGTCACGGCCGTCGCTGCAGGACGCGGTGCTGGTGTGCAAGAAGGAGCACGTCTTCAGCAAGAAGAGGTTCGTGACCAAGGCCAGGTTCAGCGACAGGGGGAAGCTGCACGACATCAGCATCGAGTGCAGCAGCAGCAACCTCACCGGCGGCACGGACGTCGACATGGCGATCAAGATCGACGGCTGCGTCAGCGTCCTCGTCAGGCACCTCCAGTGGAAGTTCAGAGGCAACGAGTGCATCTCCATCAACAAGCTCAAGGTGCAGGTGTACTGGGACGCCCATGACTGGCTCTTCGGCACAGGGATGAGGCATGCCTTGTTCATCTTCAAGCCCGAGCCGCCGTCGCCGTCGCCGCCGGGAGCGAGCTCTGAATTCAGCACCGATGAATATTCAGATTTCTGCCTGTTTCTGTACGCATGGAAGGTTGAATGAGCCTACACACTTTGTTACTGCGATACGGGCGGACG-TTTTTTTTTTTTTAACCATGCTATGAACTGGTAATTCAGATCATGTAATGGATTGGAAGATAGAAGAAGAAGAAGAGGGAAGAAATTATTGATGCCAAAAAAAAAAAAAAAAAAACTCCAGA]

[+] EMBL AK068178             [TGGCGGCGGCGGCGGCGGCAAGAGCTGCAGCGCGTGCAAGGTGGAGATGCAGCCGTGGCACTTCTGGCGGAAGTACGGGGCGAAGCAGTTCCAGGTGGACGGCAACGCCATCGACGTGGTGTGGGACCTGAGGAGCGCGAGGTTCTCCGATGGGCCGGAGCCGCTGTCCGACTACTACGTCGCGGTGGTCGCCGGCGAGGAGGTCGTCCTCCTCCTCGGCAACCTCAAGAAGGACGCGTTCCGGCGGACGGGGTCACGGCCGTCGCTGCAGGACGCGGTGCTGGTGTGCAAGAAGGAGCACGTCTTCAGCAAGAAGAGGTTCGTGACCAAGGCCAGGTTCAGCGACAGGGGGAAGCTGCACGACATCAGCATCGAGTGCAGCAGCAGCAACCTCACCGGCGGCACGGACGTCGACATGGCGATCAAGATCGACGGCTGCGTCAGCGTCCTCGTCAGGCACCTCCAGTGGAAGTTCAGAGGCAACGAGTGCATCTCCATCAACAAGCTCAAGGTGCAGGTGTACTGGGACGCCCATGACTGGCTCTTCGGCACAGGGATGAGGCATGCCTTGTTCATCTTCAAGCCCGAGCCGCCGTCGCCGTCGCCGCCGGGAGCGAGCTCTGAATTCAGCACCGATGAATATTCAGATTTCTGCCTGTTTCTGTACGCATGGAAGGTTGAATGAGCCTACACACTTTGTTACTGCGATACGGGCGGACG TTTTTTTTTTTTTAACCATGCTATGAACTGGTAATTCAGATCATGTAATGGATTGGAAGATAGAAGAAGAAGAAGAGGGAA                                         ]
[-] EMBL CB658532             [                                                                                               TGGACGGCAACGCCATCGACGTGGTGTGGGACCTGAGGAGCGCGAGGTTCTCCGATGAGCCGGAGCCGCTGTCCGACTACTACGTCGCGGTGGTCGCCGGCGAGGAGGTCGTCCTCCTCCTCGGCAACCTCAAGAAGGACGCGTTCCGGCGGACGGGGTCACGGCCGTCGCTGCAGGACGCGGTGCTGGTGTGCAAGAAGGAGCACGTCTTCAGCAAGAAGAGGTTCGTGACCAAGGCCAGGTTCAGCGACAGGGGGAAGCTGCACGACATCAGCATCGAGTGCAGCAGCAGCAACCTCACCGGCGGCACGGACGTCGACATGGCGATCAAGATCGACGGCTGCGTCAGCGTCCTCGTCAGGCACCTCCAGTGGAAGTTCAGAGGCAACGAGTGCATCTCCATCAACAAGCTCAAGGTGCAGGTGTACTGGGACGCCCATGACTGGCTCTTCGGCACAGGGATGAGGCATGCCTTGTTCATCTTCAAGCCCGAGCCGCCGTCGCCGTCGCCGCCGGGAGCGAGCTCTGAATTCAGCACCGATGAATATTCAGATTTCTGCCTGTTTCTGTACGCATGGAAGGTTGAATGAGCCTACACACTTTGTTACTGCGATACGGGCGGACG TTTTTTTTTTTTTAACCATGCTATGAACTGGTAATTCAGATCATGTAATGGATTGGAAGATAGAAGAAGAAGAAGAGGGAAGAAATT                                   ]
[-] EMBL CF326714             [                                                                                                                                                                                                                                                   GCGGACGGGGTCACGGCCGTCGCTGCAGGACGCGGTGCTGGTGTGCAAGAAGGAGCACGTCTTCAGCAAGAAGAGGTTCGTGACCAAGGCCAGGTTCAGCGACAGGGGGAAGCTGCACGACATCAGCATCGAGTGCAGCAGCAGCAACCTCACCGGCGGCACGGACGTCGACATGGCGATCAAGATCGACGGCTGCGTCAGCGTCCTCGTCAGGCACCTCCAGTGGAAGTTCAGAGGCAACGAGTGCATCTCCATCAACAAGCTCAAGGTGCAGGTGTACTGGGACGCCCATGACTGGCTCTTCGGCACAGGGATGAGGCATGCCTTGTTCATCTTCAAGCCCGAGCCGCCGTCGCCGTCGCCGCCGGGAGCGAGCTCTGAATTCAGCACCGATGAATATTCAGATTTCTGCCTGTTTCTGTACGCATGGAAGGTTGAATGAGCCTACACACTTTGTTACTGCGATACGGGCGGACGTTTTTTTTTTTTTTAACCATGCTATGAACTGGTAATTCAGATCATGTAATGGATTGGAAGATAGAAGAAGAAGAAGAGGGAAGAAATTATTGATGCCAAAAAAAAAAAAAAAAAAACTCCAGA]




>consensus_6399#0
TGGCGGCGGCGGCGGCGGCAAGAGCTGCAGCGCGTGCAAGGTGGAGATGCAGCCGTGGCA
CTTCTGGCGGAAGTACGGGGCGAAGCAGTTCCAGGTGGACGGCAACGCCATCGACGTGGT
GTGGGACCTGAGGAGCGCGAGGTTCTCCGATGGGCCGGAGCCGCTGTCCGACTACTACGT
CGCGGTGGTCGCCGGCGAGGAGGTCGTCCTCCTCCTCGGCAACCTCAAGAAGGACGCGTT
CCGGCGGACGGGGTCACGGCCGTCGCTGCAGGACGCGGTGCTGGTGTGCAAGAAGGAGCA
CGTCTTCAGCAAGAAGAGGTTCGTGACCAAGGCCAGGTTCAGCGACAGGGGGAAGCTGCA
CGACATCAGCATCGAGTGCAGCAGCAGCAACCTCACCGGCGGCACGGACGTCGACATGGC
GATCAAGATCGACGGCTGCGTCAGCGTCCTCGTCAGGCACCTCCAGTGGAAGTTCAGAGG
CAACGAGTGCATCTCCATCAACAAGCTCAAGGTGCAGGTGTACTGGGACGCCCATGACTG
GCTCTTCGGCACAGGGATGAGGCATGCCTTGTTCATCTTCAAGCCCGAGCCGCCGTCGCC
GTCGCCGCCGGGAGCGAGCTCTGAATTCAGCACCGATGAATATTCAGATTTCTGCCTGTT
TCTGTACGCATGGAAGGTTGAATGAGCCTACACACTTTGTTACTGCGATACGGGCGGACG
TTTTTTTTTTTTTAACCATGCTATGAACTGGTAATTCAGATCATGTAATGGATTGGAAGA
TAGAAGAAGAAGAAGAGGGAAGAAATTATTGATGCCAAAAAAAAAAAAAAAAAAACTCCA
GA

consensusID : consensus_6399#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 198
fasta sequence

                              [AGCGAGNTNTGAATTCAGCNCCGATGAATATTCAGATTTCTGCCTGTTTCTGTACNCATGGAAGGTTGAATGAGCCTACACACTTTGTTACTGCGATACGGGCGGACGTTTTTTTTTTTTAACCATGCTATGAACTGGTAATTCAGATCATGTAATGGATTGGNTGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU078401             [AGCGAGNTNTGAATTCAGCNCCGATGAATATTCAGATTTCTGCCTGTTTCTGTACNCATGGAAGGTTGAATGAGCCTACACACTTTGTTACTGCGATACGGGCGGACGTTTTTTTTTTTTAACCATGCTATGAACTGGTAATTCAGATCATGTAATGGATTGGNTGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_6399#1
AGCGAGNTNTGAATTCAGCNCCGATGAATATTCAGATTTCTGCCTGTTTCTGTACNCATG
GAAGGTTGAATGAGCCTACACACTTTGTTACTGCGATACGGGCGGACGTTTTTTTTTTTT
AACCATGCTATGAACTGGTAATTCAGATCATGTAATGGATTGGNTGGTCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6399#0      TGGCGGCGGCGGCGGCGGCAAGAGCTGCAGCGCGTGCAAGGTGGAGATGCAGCCGTGGCA 60
consensus_6399#1      ------------------------------------------------------------
                                                                                  

consensus_6399#0      CTTCTGGCGGAAGTACGGGGCGAAGCAGTTCCAGGTGGACGGCAACGCCATCGACGTGGT 120
consensus_6399#1      ------------------------------------------------------------
                                                                                  

consensus_6399#0      GTGGGACCTGAGGAGCGCGAGGTTCTCCGATGGGCCGGAGCCGCTGTCCGACTACTACGT 180
consensus_6399#1      ------------------------------------------------------------
                                                                                  

consensus_6399#0      CGCGGTGGTCGCCGGCGAGGAGGTCGTCCTCCTCCTCGGCAACCTCAAGAAGGACGCGTT 240
consensus_6399#1      ------------------------------------------------------------
                                                                                  

consensus_6399#0      CCGGCGGACGGGGTCACGGCCGTCGCTGCAGGACGCGGTGCTGGTGTGCAAGAAGGAGCA 300
consensus_6399#1      ------------------------------------------------------------
                                                                                  

consensus_6399#0      CGTCTTCAGCAAGAAGAGGTTCGTGACCAAGGCCAGGTTCAGCGACAGGGGGAAGCTGCA 360
consensus_6399#1      ------------------------------------------------------------
                                                                                  

consensus_6399#0      CGACATCAGCATCGAGTGCAGCAGCAGCAACCTCACCGGCGGCACGGACGTCGACATGGC 420
consensus_6399#1      ------------------------------------------------------------
                                                                                  

consensus_6399#0      GATCAAGATCGACGGCTGCGTCAGCGTCCTCGTCAGGCACCTCCAGTGGAAGTTCAGAGG 480
consensus_6399#1      ------------------------------------------------------------
                                                                                  

consensus_6399#0      CAACGAGTGCATCTCCATCAACAAGCTCAAGGTGCAGGTGTACTGGGACGCCCATGACTG 540
consensus_6399#1      ------------------------------------------------------------
                                                                                  

consensus_6399#0      GCTCTTCGGCACAGGGATGAGGCATGCCTTGTTCATCTTCAAGCCCGAGCCGCCGTCGCC 600
consensus_6399#1      ------------------------------------------------------------
                                                                                  

consensus_6399#0      GTCGCCGCCGGGAGCGAGCTCTGAATTCAGCACCGATGAATATTCAGATTTCTGCCTGTT 660
consensus_6399#1      ------------AGCGAGNTNTGAATTCAGCNCCGATGAATATTCAGATTTCTGCCTGTT 48
                                  ****** * ********** ****************************

consensus_6399#0      TCTGTACGCATGGAAGGTTGAATGAGCCTACACACTTTGTTACTGCGATACGGGCGGACG 720
consensus_6399#1      TCTGTACNCATGGAAGGTTGAATGAGCCTACACACTTTGTTACTGCGATACGGGCGGACG 108
                      ******* ****************************************************

consensus_6399#0      TTTTTTTTTTTTTAACCATGCTATGAACTGGTAATTCAGATCATGTAATGGATTGGAAGA 780
consensus_6399#1      TTTTTTTTTTTT-AACCATGCTATGAACTGGTAATTCAGATCATGTAATGGATTGGNTGG 167
                      ************ *******************************************  * 

consensus_6399#0      TAGAAGAAGAAGAAGAGGGAAGAAATTATTGATGCCAAAAAAAAAAAAAAAAAAACTCCA 840
consensus_6399#1      TCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------------------- 198
                      *  ** ** ** ** *   ** ***  *                                

consensus_6399#0      GA 842
consensus_6399#1      --