These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6401#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 301 fasta sequence [CACGCGTTCGGGAAGAGCGTCGGCGTCGTCGTCCCGGACTCGTGCCTCGGGAAGGAGGACTACCTCCGCCGGCAAGTCCCCGCCTCCGCCGCCGCGCCGGCGGCGGAACGCAGGAGAAGGGAGGAGAAGATGACGATCGGTGAAACCGTGGCAGGTTAAGTCAGCGTGTGTAGTGGACGTGTTCACATCCTTTACC-ATAATAACGCTATTATTACATGTACTAAC-GTGTGAGGATAATAAAAGTTTAGAACCCACATACCATGTATCTATCGTGTAATCGTAAAAAAAAAACTTTTAAAAA] [+] EMBL C98477 [CACGCGTTCGGGAAGAGCGTCGGCGTCGTCGTCCCGGACTCGTGCCTCGGGAAGGAGGACTACCTCCGCCGGCAAGTCCCCGCCTCCGCCGCCGCGCCGGCGGCGGAACGCAGGAGAAGGGAGGAGAAGATGACGATCGGTGAAACCGTGGCAGGTTAAGTCAGCGTGTGTAGTGGACGTGTTCACATCCTTTACC ATAATAACGCTATTATTACATGTACTAAC GTGTGAGGATAATAAAAGTTTAGAACCCACATACCATGTATCTATCGTGTAATCGTAAAAAAAAAACTTTTAAAAA] [+] EMBL AU182243 [ AACGCAGGAGAAGGGAGGAGAAGATGACGATCGGTGAAACCGTGGCAGGTTAAGTCAGCGTGTGTAGTGGACGTGTTCACATCCTTTACCTATAATAACGCTATTATTACATGTACTAACTGTGTGAGGATAATAAAAGTTTAGAACCCACATACCATGTATCTATCGTGTAATCGTAAAAAAAAAACTTTTAAAAA] [+] EMBL AU172618 [ AACGCAGGAGAAGGGAGGAGAAGATGACGATCGGTGAAACCGTGGCAGGTTAAGTCAGCGTGTGTAGTGGACGTGTTCACATCCTTTACC ATAATAACGCTATTATTACATGTACTAAC GTGTGAGGATAATAAAAGTTTAGAACCCACATACCATGTATCTATCGTGTAATCGTAAAAA ] consensusID : consensus_6401#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 208 fasta sequence [AACGCAGGAGAAGGGAGGAGAAGATGACGATCGGTGAAACCGTGGCAGGTTAAGTCAGCGTGTGTAGTGGACGTGTTCACATCCTTTACCATAATACGCTATTATTATATGTTTAGAACCCGCATACCATGTATCTATCGTGTAATCGTAAAAAAAAAAAACTTTTAATAAAACCAGAGAAGGACGGCCCCGATGTTAGGATGAAAAA] [+] EMBL BI809604 [AACGCAGGAGAAGGGAGGAGAAGATGACGATCGGTGAAACCGTGGCAGGTTAAGTCAGCGTGTGTAGTGGACGTGTTCACATCCTTTACCATAATACGCTATTATTATATGTTTAGAACCCGCATACCATGTATCTATCGTGTAATCGTAAAAAAAAAAAACTTTTAATAAAACCAGAGAAGGACGGCCCCGATGTTAGGATGAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6401#0 CACGCGTTCGGGAAGAGCGTCGGCGTCGTCGTCCCGGACTCGTGCCTCGGGAAGGAGGAC 60 consensus_6401#1 ------------------------------------------------------------ consensus_6401#0 TACCTCCGCCGGCAAGTCCCCGCCTCCGCCGCCGCGCCGGCGGCGGAACGCAGGAGAAGG 120 consensus_6401#1 ----------------------------------------------AACGCAGGAGAAGG 14 ************** consensus_6401#0 GAGGAGAAGATGACGATCGGTGAAACCGTGGCAGGTTAAGTCAGCGTGTGTAGTGGACGT 180 consensus_6401#1 GAGGAGAAGATGACGATCGGTGAAACCGTGGCAGGTTAAGTCAGCGTGTGTAGTGGACGT 74 ************************************************************ consensus_6401#0 GTTCACATCCTTTACCATAATAACGCTATTATTACATGTACTAACGTGTGAGGATAATAA 240 consensus_6401#1 GTTCACATCCTTTACCATAATA-CGCTATTATTATATGT--------------------- 112 ********************** *********** **** consensus_6401#0 AAGTTTAGAACCCACATACCATGTATCTATCGTGTAATCGTAAAAAAAAAA--CTTTTAA 298 consensus_6401#1 ----TTAGAACCCGCATACCATGTATCTATCGTGTAATCGTAAAAAAAAAAAACTTTTAA 168 ********* ************************************* ******* consensus_6401#0 AAA------------------------------------- 301 consensus_6401#1 TAAAACCAGAGAAGGACGGCCCCGATGTTAGGATGAAAAA 208 ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||