These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_641#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 511 fasta sequence [TCTTTTTTTTACAGACACCCTCTCAAAAGAATCATATATTGTACTAGAAGAAACCAATAGCTTAAGTAAGGTATAACATGGATTAAGGCGGTGGTTAACAATTAATAAGTCGAGTAAGTAATTAATCCTTAACCACGTACGGCTCGGGCGATTAAGCGGCTGAGCCAAAGTCGCCGGCCGCGGCGGCGCGCACGATCGTCAAAGCAGACGGACACAGTACTACGGCAGGTAGATCGTGCCGTCGTGGTCAGTCCAGCTCGCCGCGTTCCAGTACGACGTGTCGCCGCCGATGGCGCCGGCGAGGTCGAACATCCCGGCGTCAAGCACCGCCGTCGGAGGCGCCCAGTCGGCGGAGGATGGGGAGGCTGCCATTCTTGATCCCCTTGAGGTTGAGCTCCTTCATATCCGCCTCGATCTTGGTCCCGAAGCCGAACGGGTTGAAGAGCGGGCCCCCGGGGTATGCCGGCTCCCCGGAACCGGCGAGGTACTTCTCTAGGCCGAAGAATTCCTG] [+] EMBL CB667143 [TCTTTTTTTTACAGACACCCTCTCAAAAGAATCATATATTGTACTAGAAGAAACCAATAGCTTAAGTAAGGTATAACATGGATTAAGGCGGTGGTTAACAATTAATAAGTCGAGTAAGTAATTAATCCTTAACCACGTACGGCTCGGGCGATTAAGCGGCTGAGCCAAAGTCGCCGGCCGCGGCGGCGCGCACGATCGTCAAAGCAGACGGACACAGTACTACGGCAGGTAGATCGTGCCGTCGTGGTCAGTCCAGCTCGCCGCGTTCCAGTACGACGTGTCGCCGCCGATGGCGCCGGCGAGGTCGAACATCCCGGCGTCAAGCACCGCCGTCGGAGGCGCCCAGTCGGCGGAGGATGGGGAGGCTGCCATTCTTGATCCCCTTGAGGTTGAGCTCCTTCATATCCGCCTCGATCTTGGTCCCGAAGCCGAACGGGTTGAAGAGCGGGCCCCCGGGGTATGCCGGCTCCCCGGAACCGGCGAGGTACTTCTCTAGGCCGAAGAATTCCTG] consensusID : consensus_641#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 482 fasta sequence [CTCAAAAGAATCATATATTGTACTCCAAGAAACCAATAGCTTAAGTAAGGTATAACATGGATTAAGGCGGTGGTTAACAATTAATAAGTCGAGTAAGTAATTAATCCTTAACCACGTACGGCTCGGGCGATTAAGCGGCTGAGCCAAAGTCGCCGGCCGCGGCGGCGCGCACGATCGTCAAAGCAGACGGACACAGTACTACGGCAGGTAGATCGTGCCGTCGTGGTCAGTCCAGCTCGCCGCGTTCCAGTACGACGTGTCGCCGCCGATGGCGCCGGCGAGGTCGAACATCCCGGCGTCGAGCACCGCCGTCGGAGGCGCCCAGTCGGCGGCGGCGGCGGCGGCTTCCGCTGCCGGCCCATCCGAGGACCGTGCGGCGGCGAACGGCGGCGAGATGCTGTGTGCGGCGAACGACGCCGCCAAGGACGACCGGTGCTGCTCCGTGGCTGCGAGCGCAGGTGCGTCGGCGACCTCCTCCTCTG] [+] EMBL CB667181 [CTCAAAAGAATCATATATTGTACTCCAAGAAACCAATAGCTTAAGTAAGGTATAACATGGATTAAGGCGGTGGTTAACAATTAATAAGTCGAGTAAGTAATTAATCCTTAACCACGTACGGCTCGGGCGATTAAGCGGCTGAGCCAAAGTCGCCGGCCGCGGCGGCGCGCACGATCGTCAAAGCAGACGGACACAGTACTACGGCAGGTAGATCGTGCCGTCGTGGTCAGTCCAGCTCGCCGCGTTCCAGTACGACGTGTCGCCGCCGATGGCGCCGGCGAGGTCGAACATCCCGGCGTCGAGCACCGCCGTCGGAGGCGCCCAGTCGGCGGCGGCGGCGGCGGCTTCCGCTGCCGGCCCATCCGAGGACCGTGCGGCGGCGAACGGCGGCGAGATGCTGTGTGCGGCGAACGACGCCGCCAAGGACGACCGGTGCTGCTCCGTGGCTGCGAGCGCAGGTGCGTCGGCGACCTCCTCCTCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_641#0 TCTTTTTTTTACAGACACCCTCTCAAAAGAATCATATATTGTACTAGAAGAAACCAATAG 60 consensus_641#1 ---------------------CTCAAAAGAATCATATATTGTACTCCAAGAAACCAATAG 39 ************************ ************* consensus_641#0 CTTAAGTAAGGTATAACATGGATTAAGGCGGTGGTTAACAATTAATAAGTCGAGTAAGTA 120 consensus_641#1 CTTAAGTAAGGTATAACATGGATTAAGGCGGTGGTTAACAATTAATAAGTCGAGTAAGTA 99 ************************************************************ consensus_641#0 ATTAATCCTTAACCACGTACGGCTCGGGCGATTAAGCGGCTGAGCCAAAGTCGCCGGCCG 180 consensus_641#1 ATTAATCCTTAACCACGTACGGCTCGGGCGATTAAGCGGCTGAGCCAAAGTCGCCGGCCG 159 ************************************************************ consensus_641#0 CGGCGGCGCGCACGATCGTCAAAGCAGACGGACACAGTACTACGGCAGGTAGATCGTGCC 240 consensus_641#1 CGGCGGCGCGCACGATCGTCAAAGCAGACGGACACAGTACTACGGCAGGTAGATCGTGCC 219 ************************************************************ consensus_641#0 GTCGTGGTCAGTCCAGCTCGCCGCGTTCCAGTACGACGTGTCGCCGCCGATGGCGCCGGC 300 consensus_641#1 GTCGTGGTCAGTCCAGCTCGCCGCGTTCCAGTACGACGTGTCGCCGCCGATGGCGCCGGC 279 ************************************************************ consensus_641#0 GAGGTCGAACATCCCGGCGTCAAGCACCGCCGTCGGAGGCGCCCAGTCGGCGGAGGATGG 360 consensus_641#1 GAGGTCGAACATCCCGGCGTCGAGCACCGCCGTCGGAGGCGCCCAGTCGGCGGCGGCGGC 339 ********************* ******************************* ** * consensus_641#0 GGAGGCTGCCATTCTTGATCCCCTTGAGG-TTGAGCTCCTTCATATC-CGCCTCGATCTT 418 consensus_641#1 GGCGGCTTCCGCTGCCGGCCCATCCGAGGACCGTGCGGCGGCGAACGGCGGCGAGATGCT 399 ** **** ** * * ** **** * ** * * * ** * *** * consensus_641#0 G-GTCC------CGAAGCCGAACGGGTTGAAGAGCGGGCCCCCGGGGTATGCCGGCTCCC 471 consensus_641#1 GTGTGCGGCGAACGACGCCGCCAAGGACGACCGGTGCTGCTCCGTGGC-TGCGAGCGCAG 458 * ** * *** **** ** ** * * * *** ** *** ** * consensus_641#0 CGGAACCGGCGAGGTACTTCTCTAGGCCGAAGAATTCCTG 511 consensus_641#1 GTGCGTCGGCGACCTCCTCCTCTG---------------- 482 * ****** * ** **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||