These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6417#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1103 fasta sequence [CCGTCGCACTTGAAGAACCCGCTCTGCTTCGACTTCCGGGCGGCGAGGCGGGTGCCGGAGACGCACGCGTGGCCGGGGCTGGACGACCACCCGGTGGTGGACGGCGGCGGCGGCGGCGGCGAGGACGCGGTGCCGGTGGTGGACGTCGGGGCGGGCGACGCGGCGGCGCGGGTGGCGCGGGCGGCGGAGCAGTGGGGCGCGTTCCTTCTGGTCGGGCACGGCGTGCCGGCGGCGCTGCTGTCGCGCGTCGAGGAGCGCGTCGCCCGCGTGTTCTCCCTGCCGGCGTCGGAGAAGATGCGCGCCGTCCGCGGCCCCGGCGAGCCCTGCGGCTACGGCTCGCCGCCCATCTCCTCCTTCTTCTCCAAGCTCATGTGGTCCGAGGGCTACACCTTCTCCCCTTCCTCCCTCCGCTCCGAGCTCCGCCGCCTCTGGCCCAAGTCCGGCGACGACTACCTCCTCTTCTGTGACGTGATGGAGGAGTTTCACAAGGAGATGCGGCGGCTAGCCGACGAGTTGCTGAGGTTGTTCTTGAGGGCGCTGGGGCTCACCGGCGAGGAGGTCGCCGGAGTCGAGGCGGAGAGGAGGATCGGCGAGAGGATGACGGCGACGGTGCACCTCAACTGGTACCCGAGGTGCCCGGAGCCGCGGCGAGCGCTGGGGCTCATCGCGCACACGGACTCGGGCTTCTTCACCTTCGTGCTCCAGAGCCTCGTCCCGGGGCTGCAGCTGTTCCGTCGAGGGCCCGACCGGTGGGTGGCGGTGCCGGCGGTGGCGGGGGCCTTCGTCGTCAACGTCGGCGACCTCTTCCACATCCTCACCAACGGCCGCTTCCACAGCGTCTACCACCGCGCCGTCGTGAACCGCGACCGCGACCGGGTCTCGCTCGGCTACTTCCTCGGCCCGCCGCCGGACGCCGAGGTGGCGCCGCTGCCGGAGGCCGTGCCGGCCGGCCGGAGCCCCGCCTACCGCGCTGTCACGTGGCCGGAGTACATGGCCGTCCGCAAGAAGGCCTTCGCCACCGGCGGCTCCGCCCTCAAGATGGTCTCCACCGACGCCGCCGCCGCCGCCGACGAACACGACGACGTCGCCGCCGCCGCCGACGT] [+] EMBL AB056519 [CCGTCGCACTTGAAGAACCCGCTCTGCTTCGACTTCCGGGCGGCGAGGCGGGTGCCGGAGACGCACGCGTGGCCGGGGCTGGACGACCACCCGGTGGTGGACGGCGGCGGCGGCGGCGGCGAGGACGCGGTGCCGGTGGTGGACGTCGGGGCGGGCGACGCGGCGGCGCGGGTGGCGCGGGCGGCGGAGCAGTGGGGCGCGTTCCTTCTGGTCGGGCACGGCGTGCCGGCGGCGCTGCTGTCGCGCGTCGAGGAGCGCGTCGCCCGCGTGTTCTCCCTGCCGGCGTCGGAGAAGATGCGCGCCGTCCGCGGCCCCGGCGAGCCCTGCGGCTACGGCTCGCCGCCCATCTCCTCCTTCTTCTCCAAGCTCATGTGGTCCGAGGGCTACACCTTCTCCCCTTCCTCCCTCCGCTCCGAGCTCCGCCGCCTCTGGCCCAAGTCCGGCGACGACTACCTCCTCTTCTGTGACGTGATGGAGGAGTTTCACAAGGAGATGCGGCGGCTAGCCGACGAGTTGCTGAGGTTGTTCTTGAGGGCGCTGGGGCTCACCGGCGAGGAGGTCGCCGGAGTCGAGGCGGAGAGGAGGATCGGCGAGAGGATGACGGCGACGGTGCACCTCAACTGGTACCCGAGGTGCCCGGAGCCGCGGCGAGCGCTGGGGCTCATCGCGCACACGGACTCGGGCTTCTTCACCTTCGTGCTCCAGAGCCTCGTCCCGGGGCTGCAGCTGTTCCGTCGAGGGCCCGACCGGTGGGTGGCGGTGCCGGCGGTGGCGGGGGCCTTCGTCGTCAACGTCGGCGACCTCTTCCACATCCTCACCAACGGCCGCTTCCACAGCGTCTACCACCGCGCCGTCGTGAACCGCGACCGCGACCGGGTCTCGCTCGGCTACTTCCTCGGCCCGCCGCCGGACGCCGAGGTGGCGCCGCTGCCGGAGGCCGTGCCGGCCGGCCGGAGCCCCGCCTACCGCGCTGTCACGTGGCCGGAGTACATGGCCGTCCGCAAGAAGGCCTTCGCCACCGGCGGCTCCGCCCTCAAGATGGTCTCCACCGACGCCGCCGCCGCCGCCGACGAACACGACGACGTCGCCGCCGCCGCCGACGT] [+] EMBL AB056517 [CCGTCGCACTTGAAGAACCCGCTCTGCTTCGACTTCCGGGCGGCGAGGCGGGTGCCGGAGACGCACGCGTGGCCGGGGCTGGACGACCACCCGGTGGTGGACGGCGGCGGCGGCGGCGGCGAGGACGCGGTGCCGGTGGTGGACGTCGGGGCGGGCGACGCGGCGGCGCGGGTGGCGCGGGCGGCGGAGCAGTGGGGCGCGTTCCTTCTGGTCGGGCACGGCGTGCCGGCGGCGCTGCTGTCGCGCGTCGAGGAGCGCGTCGCCCGCGTGTTCTCCCTGCCGGCGTCGGAGAAGATGCGCGCCGTCCGCGGCCCCGGCGAGCCCTGCGGCTACGGCTCGCCGCCCATCTCCTCCTTCTTCTCCAAGCTCATGTGGTCCGAGGGCTACACCTTCTCCCCTTCCTCCCTCCGCTCCGAGCTCCGCCGCCTCTGGCCCAAGTCCGGCGACGACTACCTCCTCTTCTGTGACGTGATGGAGGAGTTTCACAAGGAGATGCGGCGGCTAGCCGACGAGTTGCTGAGGTTGTTCTTGAGGGCGCTGGGGCTCACCGGCGAGGAGGTCGCCGGAGTCGAGGCGGAGAGGAGGATCGGCGAGAGGATGACGGCGACGGTGCACCTCAACTGGTACCCGAGGTGCCCGGAGCCGCGGCGAGCGCTGGGGCTCATCGCGCACACGGACTCGGGCTTCTTCACCTTCGTGCTCCAGAGCCTCGTCCCGGGGCTGCAGCTGTTCCGTCGA GGCCCGACCGGTGGGTGGCGGTGCCGGCGGTGGCGGGGGCCTTCGTCGTCAACGTCGGCGACCTCTTCCACATCCTCACCAACGGCCGCTTCCACAGCGTCTACCACCGCGCCGTCGTGAACCGCGACCGCGACCGGGTCTCGCTCGGCTACTTCCTCGGCCCGCCGCCGGACGCCGAGGTGGCGCCGCTGCCGGAGGCCGTGCCGGCCGGCCGGAGCCCCGCCTACCGCGCTGTCACGTGGCCGGAGTACATGGCCGTCCGCAAGAAGGCCTTCGCCACCGGCGGCTCCGCCCTCAAGATGGTCTCCACCGACGCCGCCGCCGCCGCCGACGAACACGACGACGTCGCCGCCGCCGCCGACGT] [+] EMBL AB056518 [CCGTCGCACTTGAAGAACCCGCTCTGCTTCGACTTCCGGGCGGCGAGGCGGGTGCCGGAGACGCACGCGTGGCCGGGGCTGGACGACCACCCGGTGGTGGACGGCGGCGGCGGCGGCGGCGAGGACGCGGTGCCGGTGGTGGACGTCGGGGCGGGCGACGCGGC GGCGCGGGCGGCGGAGCAGTGGGGCGCGTTCCTTCTGGTCGGGCACGGCGTGCCGGCGGCGCTGCTGTCGCGCGTCGAGGAGCGCGTCGCCCGCGTGTTCTCCCTGCCGGCGTCGGAGAAGATGCGCGCCGTCCGCGGCCCCGGCGAGCCCTGCGGCTACGGCTCGCCGCCCATCTCCTCCTTCTTCTCCAAGCTCATGTGGTCCGAGGGCTACACCTTCTCCCCTTCCTCCCTCCGCTCCGAGCTCCGCCGCCTCTGGCCCAAGTCCGGCGACGACTACCTCCTCTTCTGTGACGTGATGGAGGAGTTTCACAAGGAGATGCGGCGGCTAGCCGACGAGTTGCTGAGGTTGTTCTTGAGGGCGCTGGGGCTCACCGGCGAGGAGGTCGCCGGAGTCGAGGCGGAGAGGAGGATCGGCGAGAGGATGACGGCGACGGTGCACCTCAACTGGTACCCGAGGTGCCCGGAGCCGCGGCGAGCGCTGGGGCTCATCGCGCACACGGACTCGGGCTTCTTCACCTTCGTGCTCCAGAGCCTCGTCCCGGGGCTGCAGCTGTTCCGTCGAGGGCCCGACCGGTGGGTGGCGGTGCCGGCGGTGGCGGGGGCCTTCGTCGTCAACGTCGGCGACCTCTTCCACATCCTCACCAACGGCCGCTTCCACAGCGTCTACCACCGCGCCGTCGTGAACCGCGACCGCGACCGGGTCTCGCTCGGCTACTTCCTCGGCCCGCCGCCGGACGCCGAGGTGGCGCCGCTGCCGGAGGCCGTGCCGGCCGGCCGGAGCCCCGCCTACCGCGCTGTCACGTGGCCGGAGTACATGGCCGTCCGCAAGAAGGCCTTCGCCACCGGCGGCTCCGCCCTCAAGATGGTCTCCACCGACGCCGCCGCCGCCGCCGACGAACACGACGACGTCGCCGCCGCCGCCGACGT] consensusID : consensus_6417#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 255 fasta sequence [CGAGCGTAGCGCGCGAAGTGTGTTCCTCTCTGGTCATCGTCGTCGTCGTCGCGATGCCGACGCCGTCGCACTTGAAGAACCCGCTCTGCTTCGACTTCCGGGCGGCGAAAGCGGGTGCCGGAGACNCNCGCGTGGCCGGGGCTGGACNACCNCCCGGTGGTGGACNGCGGCGGCCGCNGCAGCTAAGACNCNGTGCCCGTGGTGGACATTCNCGGCNGGCGAATCNGCGCTCNGGTTGCCCGGGCNGCGGAACAN] [+] EMBL BE228707 [CGAGCGTAGCGCGCGAAGTGTGTTCCTCTCTGGTCATCGTCGTCGTCGTCGCGATGCCGACGCCGTCGCACTTGAAGAACCCGCTCTGCTTCGACTTCCGGGCGGCGAAAGCGGGTGCCGGAGACNCNCGCGTGGCCGGGGCTGGACNACCNCCCGGTGGTGGACNGCGGCGGCCGCNGCAGCTAAGACNCNGTGCCCGTGGTGGACATTCNCGGCNGGCGAATCNGCGCTCNGGTTGCCCGGGCNGCGGAACAN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6417#0 ------------------------------------------------------------ consensus_6417#1 CGAGCGTAGCGCGCGAAGTGTGTTCCTCTCTGGTCATCGTCGTCGTCGTCGCGATGCCGA 60 consensus_6417#0 --CCGTCGCACTTGAAGAACCCGCTCTGCTTCGACTTCCGGGCGGCGAG-GCGGGTGCCG 57 consensus_6417#1 CGCCGTCGCACTTGAAGAACCCGCTCTGCTTCGACTTCCGGGCGGCGAAAGCGGGTGCCG 120 ********************************************** ********** consensus_6417#0 GAGACGCACGCGTGGCCGGGGCTGGACGACCACCCGGTGGTGGACGGCGGCGGCGGCGGC 117 consensus_6417#1 GAGACNCNCGCGTGGCCGGGGCTGGACNACCNCCCGGTGGTGGACNGCGGCGGCCGCNGC 180 ***** * ******************* *** ************* ******** ** ** consensus_6417#0 GGCGAGGACGCGGTGCCGGTGGTGGACGT-CGGGGCGGGCGACGCGGCGGCGCGGGTGGC 176 consensus_6417#1 AGCTAAGACNCNGTGCCCGTGGTGGACATTCNCGGCNGGCGAATCNGCG-CTCNGGTTGC 239 ** * *** * ***** ********* * * *** ***** * *** * * *** ** consensus_6417#0 GCGGGCGGCGGAGCAGTGGGGCGCGTTCCTTCTGGTCGGGCACGGCGTGCCGGCGGCGCT 236 consensus_6417#1 CCGGGCNGCGGAACAN-------------------------------------------- 255 ***** ***** ** consensus_6417#0 GCTGTCGCGCGTCGAGGAGCGCGTCGCCCGCGTGTTCTCCCTGCCGGCGTCGGAGAAGAT 296 consensus_6417#1 ------------------------------------------------------------ consensus_6417#0 GCGCGCCGTCCGCGGCCCCGGCGAGCCCTGCGGCTACGGCTCGCCGCCCATCTCCTCCTT 356 consensus_6417#1 ------------------------------------------------------------ consensus_6417#0 CTTCTCCAAGCTCATGTGGTCCGAGGGCTACACCTTCTCCCCTTCCTCCCTCCGCTCCGA 416 consensus_6417#1 ------------------------------------------------------------ consensus_6417#0 GCTCCGCCGCCTCTGGCCCAAGTCCGGCGACGACTACCTCCTCTTCTGTGACGTGATGGA 476 consensus_6417#1 ------------------------------------------------------------ consensus_6417#0 GGAGTTTCACAAGGAGATGCGGCGGCTAGCCGACGAGTTGCTGAGGTTGTTCTTGAGGGC 536 consensus_6417#1 ------------------------------------------------------------ consensus_6417#0 GCTGGGGCTCACCGGCGAGGAGGTCGCCGGAGTCGAGGCGGAGAGGAGGATCGGCGAGAG 596 consensus_6417#1 ------------------------------------------------------------ consensus_6417#0 GATGACGGCGACGGTGCACCTCAACTGGTACCCGAGGTGCCCGGAGCCGCGGCGAGCGCT 656 consensus_6417#1 ------------------------------------------------------------ consensus_6417#0 GGGGCTCATCGCGCACACGGACTCGGGCTTCTTCACCTTCGTGCTCCAGAGCCTCGTCCC 716 consensus_6417#1 ------------------------------------------------------------ consensus_6417#0 GGGGCTGCAGCTGTTCCGTCGAGGGCCCGACCGGTGGGTGGCGGTGCCGGCGGTGGCGGG 776 consensus_6417#1 ------------------------------------------------------------ consensus_6417#0 GGCCTTCGTCGTCAACGTCGGCGACCTCTTCCACATCCTCACCAACGGCCGCTTCCACAG 836 consensus_6417#1 ------------------------------------------------------------ consensus_6417#0 CGTCTACCACCGCGCCGTCGTGAACCGCGACCGCGACCGGGTCTCGCTCGGCTACTTCCT 896 consensus_6417#1 ------------------------------------------------------------ consensus_6417#0 CGGCCCGCCGCCGGACGCCGAGGTGGCGCCGCTGCCGGAGGCCGTGCCGGCCGGCCGGAG 956 consensus_6417#1 ------------------------------------------------------------ consensus_6417#0 CCCCGCCTACCGCGCTGTCACGTGGCCGGAGTACATGGCCGTCCGCAAGAAGGCCTTCGC 1016 consensus_6417#1 ------------------------------------------------------------ consensus_6417#0 CACCGGCGGCTCCGCCCTCAAGATGGTCTCCACCGACGCCGCCGCCGCCGCCGACGAACA 1076 consensus_6417#1 ------------------------------------------------------------ consensus_6417#0 CGACGACGTCGCCGCCGCCGCCGACGT 1103 consensus_6417#1 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||